Wall clock time and date at job start Tue Mar 31 2020 16:02:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86805 * 119.99938 * 2 1 4 4 H 1.48500 * 109.47305 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47186 * 300.00229 * 3 2 1 6 6 H 1.48498 * 109.46879 * 60.00044 * 3 2 1 7 7 C 1.38811 * 120.00354 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00107 * 179.97438 * 7 2 1 9 9 N 1.36938 * 119.99762 * 359.97438 * 7 2 1 10 10 C 1.46496 * 120.00132 * 179.97438 * 9 7 2 11 11 H 1.09003 * 109.47114 * 325.00338 * 10 9 7 12 12 C 1.53000 * 109.47214 * 84.99983 * 10 9 7 13 13 C 1.52999 * 109.47279 * 180.02562 * 12 10 9 14 14 C 1.52998 * 109.47146 * 299.99881 * 13 12 10 15 15 H 1.09003 * 109.47464 * 300.00220 * 14 13 12 16 16 N 1.46496 * 109.47215 * 179.97438 * 14 13 12 17 17 C 1.34775 * 120.00413 * 85.00148 * 16 14 13 18 18 O 1.21291 * 119.99502 * 0.02562 * 17 16 14 19 19 C 1.50694 * 120.00719 * 180.02562 * 17 16 14 20 20 C 1.54346 * 110.99107 * 293.07164 * 19 17 16 21 21 C 1.51371 * 105.11404 * 215.15346 * 20 19 17 22 22 C 1.38490 * 130.39120 * 196.75711 * 21 20 19 23 23 C 1.38103 * 120.21478 * 180.33086 * 22 21 20 24 24 C 1.38253 * 119.93622 * 0.27385 * 23 22 21 25 25 C 1.38106 * 119.93390 * 359.97438 * 24 23 22 26 26 C 1.38227 * 109.75497 * 17.54326 * 21 20 19 27 27 C 1.51373 * 109.75796 * 359.62584 * 26 21 20 28 28 C 1.53009 * 109.47041 * 59.99989 * 14 13 12 29 29 C 1.52999 * 109.47160 * 300.00002 * 28 14 13 30 30 H 0.97003 * 119.99705 * 0.02562 * 1 2 3 31 31 H 0.96999 * 119.99750 * 0.02562 * 9 7 2 32 32 H 1.09001 * 109.47029 * 300.00131 * 12 10 9 33 33 H 1.09003 * 109.46790 * 60.00157 * 12 10 9 34 34 H 1.09004 * 109.46860 * 180.02562 * 13 12 10 35 35 H 1.09003 * 109.47119 * 60.00312 * 13 12 10 36 36 H 0.97007 * 120.00322 * 265.00322 * 16 14 13 37 37 H 1.09001 * 110.72794 * 56.58870 * 19 17 16 38 38 H 1.09006 * 110.29884 * 334.27365 * 20 19 17 39 39 H 1.09003 * 110.30347 * 96.32643 * 20 19 17 40 40 H 1.08002 * 119.89478 * 0.61285 * 22 21 20 41 41 H 1.07997 * 120.03401 * 180.29281 * 23 22 21 42 42 H 1.08004 * 120.03149 * 180.02562 * 24 23 22 43 43 H 1.07999 * 119.89001 * 180.02562 * 25 24 23 44 44 H 1.09004 * 110.30165 * 101.97540 * 27 26 21 45 45 H 1.08996 * 110.29873 * 224.12578 * 27 26 21 46 46 H 1.09003 * 109.46803 * 59.99826 * 28 14 13 47 47 H 1.08996 * 109.47206 * 179.97438 * 28 14 13 48 48 H 1.08994 * 109.47027 * 179.97438 * 29 28 14 49 49 H 1.08997 * 109.46953 * 300.00325 * 29 28 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3465 0.0006 5 1 1.8914 2.3965 -1.2124 6 1 1.8914 2.3964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 2.0581 -3.6567 -0.0017 11 1 2.9684 -3.5502 -0.5917 12 6 2.4231 -4.0362 1.4349 13 6 3.1887 -5.3609 1.4337 14 6 2.3115 -6.4563 0.8240 15 1 1.4012 -6.5632 1.4140 16 7 3.0448 -7.7245 0.8223 17 6 3.0376 -8.5087 1.9184 18 8 2.4236 -8.1645 2.9062 19 6 3.7923 -9.8130 1.9169 20 6 3.1573 -10.8180 0.9325 21 6 3.3275 -12.1724 1.5866 22 6 3.2358 -13.4460 1.0503 23 6 3.4265 -14.5535 1.8530 24 6 3.7043 -14.3915 3.1976 25 6 3.7911 -13.1224 3.7353 26 6 3.6002 -12.0105 2.9321 27 6 3.6410 -10.5361 3.2721 28 6 1.9465 -6.0768 -0.6126 29 6 1.1810 -4.7521 -0.6114 30 1 -0.4850 0.8401 -0.0004 31 1 0.3557 -2.3880 -0.0005 32 1 3.0484 -3.2560 1.8690 33 1 1.5128 -4.1427 2.0249 34 1 3.4483 -5.6314 2.4572 35 1 4.0990 -5.2539 0.8437 36 1 3.5355 -8.0000 0.0322 37 1 4.8436 -9.6501 1.6799 38 1 2.1003 -10.5925 0.7912 39 1 3.6800 -10.7925 -0.0237 40 1 3.0189 -13.5734 0.0000 41 1 3.3589 -15.5452 1.4307 42 1 3.8541 -15.2566 3.8266 43 1 4.0086 -12.9967 4.7857 44 1 2.7140 -10.2347 3.7601 45 1 4.4950 -10.3195 3.9138 46 1 2.8568 -5.9698 -1.2026 47 1 1.3220 -6.8574 -1.0471 48 1 0.9214 -4.4816 -1.6348 49 1 0.2708 -4.8591 -0.0213 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001034743405.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:02:19 Heat of formation + Delta-G solvation = -42.694832 kcal Electronic energy + Delta-G solvation = -27064.458158 eV Core-core repulsion = 23375.179573 eV Total energy + Delta-G solvation = -3689.278585 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 328.189 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.66057 -40.47750 -39.23205 -36.52033 -36.22492 -34.62993 -32.52317 -32.27449 -31.68156 -30.42816 -28.77784 -28.16420 -25.73844 -24.51490 -23.59921 -22.61064 -22.05930 -21.78414 -21.23670 -20.59162 -19.11694 -18.26666 -17.37181 -17.10515 -16.84401 -16.79772 -16.03005 -15.79484 -15.52229 -15.41981 -15.33033 -15.01504 -14.63575 -14.26111 -14.10537 -13.98010 -13.88063 -13.68094 -13.47889 -13.22987 -13.11114 -13.07668 -12.85592 -12.46835 -12.32122 -12.15849 -12.13836 -12.09741 -12.07512 -12.01936 -11.66404 -11.65190 -11.45305 -11.19439 -10.88968 -10.76844 -10.01396 -9.70292 -9.41736 -8.99075 -7.93537 -5.21524 0.44418 0.49216 1.46592 1.47573 1.57293 1.61843 2.14883 2.56619 2.85364 3.31553 3.39559 3.48906 3.76194 3.82817 3.88820 3.95358 4.04162 4.15531 4.18716 4.30267 4.32329 4.33941 4.38917 4.41622 4.55693 4.60952 4.64833 4.67371 4.69297 4.75796 4.85632 4.87219 4.91952 5.01711 5.08078 5.13466 5.15794 5.19692 5.25292 5.26402 5.29026 5.49025 5.55684 5.56363 5.56893 5.63832 5.65009 5.72565 6.13057 6.29494 6.61292 7.30100 7.34780 8.12834 8.34822 9.30377 Molecular weight = 328.19amu Principal moments of inertia in cm(-1) A = 0.040808 B = 0.001860 C = 0.001823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 685.972411 B =15047.367118 C =15359.558059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.971 5.971 2 C -0.080 4.080 3 Si 0.970 3.030 4 H -0.265 1.265 5 H -0.293 1.293 6 H -0.297 1.297 7 C -0.235 4.235 8 H 0.076 0.924 9 N -0.740 5.740 10 C 0.172 3.828 11 H 0.049 0.951 12 C -0.123 4.123 13 C -0.111 4.111 14 C 0.152 3.848 15 H 0.061 0.939 16 N -0.706 5.706 17 C 0.521 3.479 18 O -0.584 6.584 19 C -0.101 4.101 20 C -0.064 4.064 21 C -0.110 4.110 22 C -0.113 4.113 23 C -0.127 4.127 24 C -0.126 4.126 25 C -0.123 4.123 26 C -0.111 4.111 27 C -0.070 4.070 28 C -0.104 4.104 29 C -0.114 4.114 30 H 0.249 0.751 31 H 0.371 0.629 32 H 0.039 0.961 33 H 0.036 0.964 34 H 0.046 0.954 35 H 0.077 0.923 36 H 0.418 0.582 37 H 0.133 0.867 38 H 0.078 0.922 39 H 0.113 0.887 40 H 0.140 0.860 41 H 0.145 0.855 42 H 0.143 0.857 43 H 0.127 0.873 44 H 0.073 0.927 45 H 0.083 0.917 46 H 0.089 0.911 47 H 0.089 0.911 48 H 0.067 0.933 49 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.094 -32.443 -0.344 34.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.623 5.623 2 C -0.272 4.272 3 Si 0.800 3.200 4 H -0.190 1.190 5 H -0.220 1.220 6 H -0.224 1.224 7 C -0.367 4.367 8 H 0.094 0.906 9 N -0.379 5.379 10 C 0.064 3.936 11 H 0.067 0.933 12 C -0.164 4.164 13 C -0.151 4.151 14 C 0.047 3.953 15 H 0.079 0.921 16 N -0.357 5.357 17 C 0.308 3.692 18 O -0.464 6.464 19 C -0.122 4.122 20 C -0.101 4.101 21 C -0.110 4.110 22 C -0.131 4.131 23 C -0.145 4.145 24 C -0.144 4.144 25 C -0.141 4.141 26 C -0.111 4.111 27 C -0.108 4.108 28 C -0.143 4.143 29 C -0.153 4.153 30 H 0.058 0.942 31 H 0.202 0.798 32 H 0.058 0.942 33 H 0.055 0.945 34 H 0.065 0.935 35 H 0.096 0.904 36 H 0.256 0.744 37 H 0.151 0.849 38 H 0.096 0.904 39 H 0.131 0.869 40 H 0.157 0.843 41 H 0.163 0.837 42 H 0.160 0.840 43 H 0.145 0.855 44 H 0.092 0.908 45 H 0.101 0.899 46 H 0.108 0.892 47 H 0.107 0.893 48 H 0.086 0.914 49 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 10.824 -32.073 0.321 33.852 hybrid contribution -0.198 1.395 0.302 1.441 sum 10.626 -30.678 0.622 32.472 Atomic orbital electron populations 1.69829 1.06612 1.25809 1.60005 1.25552 0.96369 1.01061 1.04187 0.85107 0.78308 0.80042 0.76546 1.18956 1.21973 1.22447 1.19674 0.91422 0.85308 1.40268 0.90623 1.42689 1.05449 1.01187 1.88555 1.20500 0.94574 0.85004 0.93517 0.93319 1.22032 0.98919 0.96030 0.99452 1.21758 0.99020 0.93841 1.00457 1.20827 0.94345 0.82477 0.97652 0.92057 1.45909 1.52733 1.20448 1.16619 1.20814 0.80192 0.85802 0.82404 1.90715 1.45596 1.74957 1.35094 1.21979 1.01873 0.90881 0.97498 1.20962 1.01704 0.88708 0.98698 1.20711 1.00344 0.95228 0.94740 1.20919 1.00212 0.90882 1.01075 1.21396 0.99667 0.99502 0.93951 1.21363 0.99850 0.97112 0.96079 1.20884 1.01013 0.91943 1.00220 1.20715 1.00414 0.95037 0.94979 1.20895 1.03262 0.89876 0.96723 1.21646 1.01756 0.96467 0.94397 1.21644 0.98359 0.94318 1.00964 0.94176 0.79772 0.94175 0.94487 0.93495 0.90393 0.74409 0.84881 0.90375 0.86876 0.84259 0.83676 0.83963 0.85473 0.90850 0.89860 0.89217 0.89259 0.91430 0.93083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.41 13.06 21.65 0.28 -60.13 16 2 C -0.08 -4.64 5.50 84.86 0.47 -4.18 16 3 Si 0.97 46.73 29.55 68.60 2.03 48.75 16 4 H -0.27 -11.93 7.11 99.48 0.71 -11.23 16 5 H -0.29 -14.00 7.11 99.48 0.71 -13.29 16 6 H -0.30 -14.43 7.11 99.48 0.71 -13.72 16 7 C -0.23 -13.13 9.93 84.03 0.83 -12.29 16 8 H 0.08 4.06 7.83 -2.91 -0.02 4.04 16 9 N -0.74 -37.60 5.12 -322.94 -1.65 -39.25 16 10 C 0.17 6.63 2.77 44.99 0.12 6.75 16 11 H 0.05 1.86 8.08 -2.39 -0.02 1.84 16 12 C -0.12 -4.55 5.50 30.59 0.17 -4.38 16 13 C -0.11 -3.15 5.49 30.59 0.17 -2.98 16 14 C 0.15 3.64 2.45 44.99 0.11 3.75 16 15 H 0.06 1.84 7.58 -2.39 -0.02 1.82 16 16 N -0.71 -12.31 5.08 -442.53 -2.25 -14.56 16 17 C 0.52 11.23 7.02 87.66 0.62 11.85 16 18 O -0.58 -18.74 15.17 -3.06 -0.05 -18.79 16 19 C -0.10 -1.49 3.46 -10.63 -0.04 -1.53 16 20 C -0.06 -0.76 6.32 30.52 0.19 -0.57 16 21 C -0.11 -1.67 6.14 -19.59 -0.12 -1.79 16 22 C -0.11 -1.44 10.04 22.30 0.22 -1.22 16 23 C -0.13 -1.50 10.05 22.24 0.22 -1.28 16 24 C -0.13 -1.61 10.05 22.24 0.22 -1.39 16 25 C -0.12 -1.92 10.04 22.30 0.22 -1.69 16 26 C -0.11 -1.94 6.14 -19.59 -0.12 -2.06 16 27 C -0.07 -1.29 6.10 30.52 0.19 -1.10 16 28 C -0.10 -2.17 5.39 30.60 0.16 -2.01 16 29 C -0.11 -3.48 5.39 30.60 0.16 -3.31 16 30 H 0.25 15.04 8.31 -92.71 -0.77 14.27 16 31 H 0.37 20.39 7.80 -92.71 -0.72 19.67 16 32 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 33 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 34 H 0.05 1.44 8.14 -2.38 -0.02 1.42 16 35 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 36 H 0.42 4.05 8.60 -92.70 -0.80 3.25 16 37 H 0.13 1.30 8.14 -2.39 -0.02 1.28 16 38 H 0.08 1.08 7.89 -2.38 -0.02 1.06 16 39 H 0.11 0.68 8.14 -2.39 -0.02 0.66 16 40 H 0.14 1.16 8.06 -2.91 -0.02 1.13 16 41 H 0.15 0.98 8.06 -2.91 -0.02 0.96 16 42 H 0.14 1.15 8.06 -2.91 -0.02 1.13 16 43 H 0.13 1.66 8.06 -2.91 -0.02 1.64 16 44 H 0.07 1.75 6.99 -2.39 -0.02 1.73 16 45 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 46 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 47 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 48 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 49 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 Total: -1.00 -74.29 391.95 1.60 -72.69 By element: Atomic # 1 Polarization: 31.28 SS G_CDS: -0.57 Total: 30.71 kcal Atomic # 6 Polarization: -23.24 SS G_CDS: 3.81 Total: -19.43 kcal Atomic # 7 Polarization: -110.32 SS G_CDS: -3.62 Total: -113.94 kcal Atomic # 8 Polarization: -18.74 SS G_CDS: -0.05 Total: -18.79 kcal Atomic # 14 Polarization: 46.73 SS G_CDS: 2.03 Total: 48.75 kcal Total: -74.29 1.60 -72.69 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034743405.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.992 kcal (2) G-P(sol) polarization free energy of solvation -74.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.687 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds