Wall clock time and date at job start Tue Mar 31 2020 14:52:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 F 1.39901 * 109.47495 * 2 1 4 4 F 1.39905 * 109.47210 * 120.00135 * 2 1 3 5 5 C 1.52998 * 109.47077 * 239.99730 * 2 1 3 6 6 C 1.50706 * 115.54785 * 63.71910 * 5 2 1 7 7 O 1.21280 * 119.99803 * 261.26531 * 6 5 2 8 8 N 1.34772 * 120.00102 * 81.26004 * 6 5 2 9 9 C 1.46877 * 120.46734 * 356.11304 * 8 6 5 10 10 C 1.52859 * 109.01483 * 235.48573 * 9 8 6 11 11 C 1.52674 * 109.17575 * 307.81296 * 10 9 8 12 12 C 1.53483 * 113.62222 * 188.99821 * 11 10 9 13 13 N 1.47668 * 85.98679 * 137.70762 * 12 11 10 14 14 C 1.36932 * 134.45848 * 155.71168 * 13 12 11 15 15 H 1.08003 * 120.00605 * 179.97438 * 14 13 12 16 16 C 1.38812 * 120.00208 * 359.95194 * 14 13 12 17 17 N 1.31628 * 119.99678 * 0.02562 * 16 14 13 18 18 Si 1.86794 * 120.00676 * 179.97438 * 16 14 13 19 19 H 1.48506 * 109.47054 * 0.02562 * 18 16 14 20 20 H 1.48499 * 109.47373 * 120.00163 * 18 16 14 21 21 H 1.48501 * 109.47598 * 240.00342 * 18 16 14 22 22 C 1.47664 * 91.08799 * 335.68077 * 13 12 11 23 23 C 1.52676 * 113.18100 * 57.46433 * 11 10 9 24 24 C 1.46880 * 120.46417 * 176.38282 * 8 6 5 25 25 C 1.52999 * 117.50259 * 278.04911 * 5 2 1 26 26 C 1.52999 * 117.49997 * 209.38302 * 5 2 1 27 27 H 1.09000 * 109.46958 * 54.72554 * 1 2 3 28 28 H 1.09002 * 109.46603 * 294.72664 * 1 2 3 29 29 H 1.09004 * 109.47296 * 174.72800 * 1 2 3 30 30 H 1.09006 * 109.58958 * 355.30373 * 9 8 6 31 31 H 1.08996 * 109.59221 * 115.74252 * 9 8 6 32 32 H 1.09005 * 109.61224 * 187.83636 * 10 9 8 33 33 H 1.08998 * 109.45309 * 67.69527 * 10 9 8 34 34 H 1.09001 * 113.78482 * 251.97530 * 12 11 10 35 35 H 1.08999 * 113.79410 * 23.43568 * 12 11 10 36 36 H 0.97003 * 119.99876 * 179.97438 * 17 16 14 37 37 H 1.09003 * 113.79285 * 270.05460 * 22 13 12 38 38 H 1.08997 * 113.79608 * 138.57678 * 22 13 12 39 39 H 1.09005 * 109.52471 * 182.51752 * 23 11 10 40 40 H 1.08995 * 109.58893 * 62.33773 * 23 11 10 41 41 H 1.09000 * 109.59175 * 244.25903 * 24 8 6 42 42 H 1.09005 * 109.58945 * 4.54838 * 24 8 6 43 43 H 1.08995 * 117.50065 * 359.97438 * 25 5 2 44 44 H 1.08996 * 117.50007 * 145.02234 * 25 5 2 45 45 H 1.09005 * 117.49895 * 214.97927 * 26 5 2 46 46 H 1.08990 * 117.50144 * 0.02562 * 26 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 9 1.9964 1.3190 0.0000 4 9 1.9964 -0.6595 1.1423 5 6 2.0400 -0.7213 -1.2492 6 6 1.6890 -0.0723 -2.5633 7 8 0.7469 -0.4805 -3.2087 8 7 2.4220 0.9619 -3.0211 9 6 3.5116 1.5196 -2.2092 10 6 3.2762 3.0183 -2.0219 11 6 3.0553 3.6657 -3.3869 12 6 3.0260 5.1996 -3.3425 13 7 3.8449 5.1474 -4.5702 14 6 4.0600 6.0038 -5.6167 15 1 4.7277 5.7214 -6.4173 16 6 3.4194 7.2349 -5.6491 17 7 2.6057 7.5791 -4.6735 18 14 3.7132 8.4036 -7.0764 19 1 4.6639 7.7850 -8.0350 20 1 2.4262 8.6785 -7.7641 21 1 4.2829 9.6761 -6.5651 22 6 4.3397 3.8018 -4.2166 23 6 1.8903 3.0536 -4.1609 24 6 2.1387 1.5508 -4.3365 25 6 2.0964 -2.2497 -1.2090 26 6 3.3904 -1.4339 -1.1517 27 1 -0.3633 0.5935 -0.8390 28 1 -0.3632 0.4299 0.9335 29 1 -0.3634 -1.0233 -0.0944 30 1 3.5295 1.0298 -1.2356 31 1 4.4631 1.3628 -2.7172 32 1 4.1453 3.4680 -1.5417 33 1 2.3952 3.1723 -1.3988 34 1 2.0338 5.6249 -3.4936 35 1 3.5465 5.6248 -2.4844 36 1 2.1583 8.4396 -4.6959 37 1 5.2507 3.8114 -3.6181 38 1 4.3916 3.1160 -5.0622 39 1 1.8143 3.5273 -5.1397 40 1 0.9634 3.2078 -3.6085 41 1 2.9915 1.3962 -4.9975 42 1 1.2541 1.0797 -4.7650 43 1 1.7705 -2.7414 -0.2925 44 1 1.8800 -2.7858 -2.1330 45 1 4.0247 -1.4337 -2.0382 46 1 3.9153 -1.3892 -0.1976 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035799372.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:52:53 Heat of formation + Delta-G solvation = -47.354411 kcal Electronic energy + Delta-G solvation = -30310.641460 eV Core-core repulsion = 26066.931291 eV Total energy + Delta-G solvation = -4243.710170 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 328.170 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -49.30539 -47.27980 -40.60485 -39.02365 -36.87311 -35.76401 -32.46670 -31.54268 -31.02968 -30.42058 -26.97908 -25.53893 -24.95961 -23.79810 -23.36208 -22.82537 -22.08066 -20.89826 -19.27998 -18.41360 -17.64807 -17.01980 -16.67113 -16.61395 -16.19810 -15.83511 -14.91347 -14.80281 -14.70063 -14.65247 -14.05256 -13.87825 -13.76896 -13.62270 -13.46018 -13.28004 -13.01611 -12.74288 -12.52634 -12.41796 -12.23250 -12.10584 -11.98700 -11.90332 -11.65822 -11.08580 -11.05841 -10.93917 -10.84538 -10.81161 -10.63519 -10.31294 -10.14218 -9.88980 -9.68523 -9.48191 -9.31077 -8.76641 -8.46672 -6.82908 -5.73748 -3.05377 2.30796 2.79546 3.10440 3.39647 3.39845 3.45185 3.47650 3.80999 3.98687 4.19173 4.23992 4.47908 4.58006 4.65532 4.99715 5.06151 5.11587 5.20238 5.24840 5.28324 5.33214 5.38315 5.41706 5.45664 5.51385 5.61192 5.65181 5.66566 5.72059 5.90830 5.93306 5.99952 6.21989 6.29761 6.38467 6.46585 6.62998 6.67500 6.84654 6.88340 7.27541 7.39964 7.41458 7.62059 8.01934 8.06392 9.08100 9.74261 10.64935 11.43201 Molecular weight = 328.17amu Principal moments of inertia in cm(-1) A = 0.026243 B = 0.003193 C = 0.003106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1066.708291 B = 8766.112339 C = 9011.559076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.333 3.667 3 F -0.184 7.184 4 F -0.194 7.194 5 C -0.215 4.215 6 C 0.555 3.445 7 O -0.536 6.536 8 N -0.590 5.590 9 C 0.104 3.896 10 C -0.116 4.116 11 C -0.109 4.109 12 C 0.174 3.826 13 N -0.609 5.609 14 C -0.221 4.221 15 H 0.078 0.922 16 C -0.008 4.008 17 N -0.920 5.920 18 Si 0.909 3.091 19 H -0.280 1.280 20 H -0.291 1.291 21 H -0.291 1.291 22 C 0.126 3.874 23 C -0.095 4.095 24 C 0.112 3.888 25 C -0.125 4.125 26 C -0.149 4.149 27 H 0.091 0.909 28 H 0.084 0.916 29 H 0.091 0.909 30 H 0.087 0.913 31 H 0.067 0.933 32 H 0.074 0.926 33 H 0.067 0.933 34 H 0.071 0.929 35 H 0.025 0.975 36 H 0.252 0.748 37 H 0.031 0.969 38 H 0.039 0.961 39 H 0.087 0.913 40 H 0.060 0.940 41 H 0.070 0.930 42 H 0.088 0.912 43 H 0.111 0.889 44 H 0.112 0.888 45 H 0.109 0.891 46 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.032 -19.729 10.821 22.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C 0.296 3.704 3 F -0.164 7.164 4 F -0.175 7.175 5 C -0.220 4.220 6 C 0.341 3.659 7 O -0.413 6.413 8 N -0.322 5.322 9 C -0.018 4.018 10 C -0.155 4.155 11 C -0.110 4.110 12 C 0.048 3.952 13 N -0.335 5.335 14 C -0.348 4.348 15 H 0.096 0.904 16 C -0.204 4.204 17 N -0.568 5.568 18 Si 0.739 3.261 19 H -0.205 1.205 20 H -0.218 1.218 21 H -0.218 1.218 22 C 0.000 4.000 23 C -0.133 4.133 24 C -0.009 4.009 25 C -0.162 4.162 26 C -0.186 4.186 27 H 0.110 0.890 28 H 0.103 0.897 29 H 0.110 0.890 30 H 0.105 0.895 31 H 0.085 0.915 32 H 0.092 0.908 33 H 0.086 0.914 34 H 0.090 0.910 35 H 0.042 0.958 36 H 0.062 0.938 37 H 0.048 0.952 38 H 0.057 0.943 39 H 0.106 0.894 40 H 0.079 0.921 41 H 0.088 0.912 42 H 0.107 0.893 43 H 0.129 0.871 44 H 0.130 0.870 45 H 0.128 0.872 46 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -1.535 -19.600 10.281 22.186 hybrid contribution 0.491 1.084 -0.498 1.290 sum -1.044 -18.516 9.783 20.967 Atomic orbital electron populations 1.22709 0.90539 1.05904 1.05482 1.20038 0.93949 0.75279 0.81136 1.93046 1.90154 1.36714 1.96521 1.93005 1.90650 1.81070 1.52808 1.22339 1.06966 0.98028 0.94623 1.18897 0.82199 0.80001 0.84794 1.90694 1.28311 1.63701 1.58597 1.48044 1.33451 1.31431 1.19223 1.21889 0.89006 0.95446 0.95471 1.21717 1.02444 0.93394 0.97903 1.22391 0.96361 0.98632 0.93624 1.22223 0.96982 0.88004 0.87958 1.45969 1.51499 1.15256 1.20765 1.19056 1.22596 0.95878 0.97309 0.90403 1.24754 0.99835 0.97581 0.98274 1.69835 1.32633 1.21982 1.32328 0.86095 0.77373 0.81037 0.81551 1.20544 1.21762 1.21843 1.22590 0.93711 0.88508 0.95165 1.21468 0.97265 0.92637 1.01931 1.21769 1.01995 0.94400 0.82761 1.23082 0.99499 0.88582 1.05029 1.23246 0.89653 1.00583 1.05089 0.88987 0.89719 0.89011 0.89457 0.91510 0.90793 0.91388 0.91028 0.95753 0.93790 0.95183 0.94256 0.89408 0.92117 0.91221 0.89338 0.87066 0.87001 0.87221 0.86882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.76 9.16 37.16 0.34 -1.42 16 2 C 0.33 3.49 2.04 -26.73 -0.05 3.44 16 3 F -0.18 -2.25 12.75 2.25 0.03 -2.22 16 4 F -0.19 -1.98 15.64 2.25 0.04 -1.94 16 5 C -0.22 -2.24 0.72 -155.66 -0.11 -2.35 16 6 C 0.56 7.47 6.15 -10.98 -0.07 7.40 16 7 O -0.54 -8.69 16.40 5.56 0.09 -8.60 16 8 N -0.59 -7.97 2.95 -172.96 -0.51 -8.48 16 9 C 0.10 1.29 5.04 -3.91 -0.02 1.27 16 10 C -0.12 -1.70 4.97 -26.97 -0.13 -1.83 16 11 C -0.11 -1.95 0.77 -154.42 -0.12 -2.07 16 12 C 0.17 4.02 6.64 -3.16 -0.02 4.00 16 13 N -0.61 -15.29 3.53 -179.78 -0.64 -15.93 16 14 C -0.22 -6.15 10.70 -15.06 -0.16 -6.31 16 15 H 0.08 2.11 7.83 -52.48 -0.41 1.70 16 16 C -0.01 -0.23 5.50 -17.43 -0.10 -0.32 16 17 N -0.92 -27.26 11.39 55.49 0.63 -26.63 16 18 Si 0.91 22.19 29.55 -169.99 -5.02 17.17 16 19 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 20 H -0.29 -7.14 7.11 56.52 0.40 -6.73 16 21 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 22 C 0.13 2.49 7.73 -3.15 -0.02 2.46 16 23 C -0.09 -1.62 5.22 -26.73 -0.14 -1.76 16 24 C 0.11 1.65 6.30 -3.66 -0.02 1.62 16 25 C -0.12 -1.01 9.62 -26.69 -0.26 -1.27 16 26 C -0.15 -1.20 8.32 -26.69 -0.22 -1.43 16 27 H 0.09 0.99 7.84 -51.93 -0.41 0.58 16 28 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.09 0.98 3.82 -51.93 -0.20 0.78 16 31 H 0.07 0.78 8.07 -51.93 -0.42 0.36 16 32 H 0.07 1.06 8.12 -51.93 -0.42 0.64 16 33 H 0.07 1.03 7.09 -51.93 -0.37 0.66 16 34 H 0.07 1.86 7.12 -51.93 -0.37 1.49 16 35 H 0.02 0.59 8.09 -51.93 -0.42 0.17 16 36 H 0.25 7.26 8.31 -40.82 -0.34 6.92 16 37 H 0.03 0.58 8.07 -51.93 -0.42 0.16 16 38 H 0.04 0.74 7.41 -51.93 -0.38 0.36 16 39 H 0.09 1.71 8.01 -51.93 -0.42 1.30 16 40 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 41 H 0.07 0.98 7.49 -51.93 -0.39 0.59 16 42 H 0.09 1.33 6.97 -51.93 -0.36 0.97 16 43 H 0.11 0.74 7.89 -51.93 -0.41 0.33 16 44 H 0.11 0.93 8.14 -51.93 -0.42 0.51 16 45 H 0.11 0.85 8.14 -51.93 -0.42 0.43 16 46 H 0.11 0.81 7.67 -51.93 -0.40 0.41 16 LS Contribution 362.95 15.07 5.47 5.47 Total: -1.00 -31.85 362.95 -8.07 -39.92 By element: Atomic # 1 Polarization: 6.84 SS G_CDS: -7.04 Total: -0.20 kcal Atomic # 6 Polarization: 2.55 SS G_CDS: -1.11 Total: 1.44 kcal Atomic # 7 Polarization: -50.52 SS G_CDS: -0.51 Total: -51.03 kcal Atomic # 8 Polarization: -8.69 SS G_CDS: 0.09 Total: -8.60 kcal Atomic # 9 Polarization: -4.23 SS G_CDS: 0.06 Total: -4.16 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.02 Total: 17.17 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -31.85 -8.07 -39.92 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035799372.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.436 kcal (2) G-P(sol) polarization free energy of solvation -31.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.919 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds