Wall clock time and date at job start Tue Mar 31 2020 14:52:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 F 1.39901 * 109.47495 * 2 1 4 4 F 1.39905 * 109.47210 * 120.00135 * 2 1 3 5 5 C 1.52998 * 109.47077 * 239.99730 * 2 1 3 6 6 C 1.50706 * 115.54785 * 63.71910 * 5 2 1 7 7 O 1.21280 * 119.99803 * 261.26531 * 6 5 2 8 8 N 1.34772 * 120.00102 * 81.26004 * 6 5 2 9 9 C 1.46877 * 120.46734 * 356.11304 * 8 6 5 10 10 C 1.52859 * 109.01483 * 235.48573 * 9 8 6 11 11 C 1.52674 * 109.17575 * 307.81296 * 10 9 8 12 12 C 1.53483 * 113.62222 * 188.99821 * 11 10 9 13 13 N 1.47668 * 85.98679 * 137.70762 * 12 11 10 14 14 C 1.36932 * 134.45848 * 155.71168 * 13 12 11 15 15 H 1.08003 * 120.00605 * 179.97438 * 14 13 12 16 16 C 1.38812 * 120.00208 * 359.95194 * 14 13 12 17 17 N 1.31628 * 119.99678 * 0.02562 * 16 14 13 18 18 Si 1.86794 * 120.00676 * 179.97438 * 16 14 13 19 19 H 1.48506 * 109.47054 * 0.02562 * 18 16 14 20 20 H 1.48499 * 109.47373 * 120.00163 * 18 16 14 21 21 H 1.48501 * 109.47598 * 240.00342 * 18 16 14 22 22 C 1.47664 * 91.08799 * 335.68077 * 13 12 11 23 23 C 1.52676 * 113.18100 * 57.46433 * 11 10 9 24 24 C 1.46880 * 120.46417 * 176.38282 * 8 6 5 25 25 C 1.52999 * 117.50259 * 278.04911 * 5 2 1 26 26 C 1.52999 * 117.49997 * 209.38302 * 5 2 1 27 27 H 1.09000 * 109.46958 * 54.72554 * 1 2 3 28 28 H 1.09002 * 109.46603 * 294.72664 * 1 2 3 29 29 H 1.09004 * 109.47296 * 174.72800 * 1 2 3 30 30 H 1.09006 * 109.58958 * 355.30373 * 9 8 6 31 31 H 1.08996 * 109.59221 * 115.74252 * 9 8 6 32 32 H 1.09005 * 109.61224 * 187.83636 * 10 9 8 33 33 H 1.08998 * 109.45309 * 67.69527 * 10 9 8 34 34 H 1.09001 * 113.78482 * 251.97530 * 12 11 10 35 35 H 1.08999 * 113.79410 * 23.43568 * 12 11 10 36 36 H 0.97003 * 119.99876 * 179.97438 * 17 16 14 37 37 H 1.09003 * 113.79285 * 270.05460 * 22 13 12 38 38 H 1.08997 * 113.79608 * 138.57678 * 22 13 12 39 39 H 1.09005 * 109.52471 * 182.51752 * 23 11 10 40 40 H 1.08995 * 109.58893 * 62.33773 * 23 11 10 41 41 H 1.09000 * 109.59175 * 244.25903 * 24 8 6 42 42 H 1.09005 * 109.58945 * 4.54838 * 24 8 6 43 43 H 1.08995 * 117.50065 * 359.97438 * 25 5 2 44 44 H 1.08996 * 117.50007 * 145.02234 * 25 5 2 45 45 H 1.09005 * 117.49895 * 214.97927 * 26 5 2 46 46 H 1.08990 * 117.50144 * 0.02562 * 26 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 9 1.9964 1.3190 0.0000 4 9 1.9964 -0.6595 1.1423 5 6 2.0400 -0.7213 -1.2492 6 6 1.6890 -0.0723 -2.5633 7 8 0.7469 -0.4805 -3.2087 8 7 2.4220 0.9619 -3.0211 9 6 3.5116 1.5196 -2.2092 10 6 3.2762 3.0183 -2.0219 11 6 3.0553 3.6657 -3.3869 12 6 3.0260 5.1996 -3.3425 13 7 3.8449 5.1474 -4.5702 14 6 4.0600 6.0038 -5.6167 15 1 4.7277 5.7214 -6.4173 16 6 3.4194 7.2349 -5.6491 17 7 2.6057 7.5791 -4.6735 18 14 3.7132 8.4036 -7.0764 19 1 4.6639 7.7850 -8.0350 20 1 2.4262 8.6785 -7.7641 21 1 4.2829 9.6761 -6.5651 22 6 4.3397 3.8018 -4.2166 23 6 1.8903 3.0536 -4.1609 24 6 2.1387 1.5508 -4.3365 25 6 2.0964 -2.2497 -1.2090 26 6 3.3904 -1.4339 -1.1517 27 1 -0.3633 0.5935 -0.8390 28 1 -0.3632 0.4299 0.9335 29 1 -0.3634 -1.0233 -0.0944 30 1 3.5295 1.0298 -1.2356 31 1 4.4631 1.3628 -2.7172 32 1 4.1453 3.4680 -1.5417 33 1 2.3952 3.1723 -1.3988 34 1 2.0338 5.6249 -3.4936 35 1 3.5465 5.6248 -2.4844 36 1 2.1583 8.4396 -4.6959 37 1 5.2507 3.8114 -3.6181 38 1 4.3916 3.1160 -5.0622 39 1 1.8143 3.5273 -5.1397 40 1 0.9634 3.2078 -3.6085 41 1 2.9915 1.3962 -4.9975 42 1 1.2541 1.0797 -4.7650 43 1 1.7705 -2.7414 -0.2925 44 1 1.8800 -2.7858 -2.1330 45 1 4.0247 -1.4337 -2.0382 46 1 3.9153 -1.3892 -0.1976 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001035799372.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:52:52 Heat of formation + Delta-G solvation = -65.426302 kcal Electronic energy + Delta-G solvation = -30311.425116 eV Core-core repulsion = 26066.931291 eV Total energy + Delta-G solvation = -4244.493826 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 328.170 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -50.12342 -48.10567 -41.75332 -40.42028 -37.75479 -37.09147 -34.39907 -32.30666 -32.23102 -32.02380 -28.74699 -26.83920 -26.37257 -25.10220 -24.48884 -23.65177 -23.25480 -22.36404 -20.33139 -19.47579 -18.69056 -18.49444 -18.21025 -17.52064 -17.19963 -16.87023 -16.72820 -16.13353 -15.87459 -15.69169 -15.56407 -15.12433 -14.90868 -14.75732 -14.38176 -14.33931 -14.05494 -14.04062 -13.69784 -13.58533 -13.44281 -13.21309 -13.12799 -12.93590 -12.85085 -12.75645 -12.64224 -12.49638 -12.14285 -12.12706 -11.68702 -11.65424 -11.57158 -11.39558 -11.21204 -11.03405 -10.81599 -10.74925 -9.65894 -8.86730 -7.88099 -5.20248 1.30666 1.44716 1.45291 1.55401 1.83044 2.37091 2.48277 2.60808 3.04025 3.15650 3.32528 3.38938 3.42999 3.52301 3.63584 3.86327 3.87250 3.97930 3.98612 4.16854 4.30095 4.41773 4.45730 4.56975 4.61600 4.63866 4.66819 4.68629 4.74648 4.81235 4.88849 4.89302 4.93136 4.94198 5.04974 5.09363 5.14062 5.20907 5.29843 5.35750 5.49060 5.60510 5.75028 5.97363 6.33789 6.94838 7.01136 7.64188 8.61424 9.28846 Molecular weight = 328.17amu Principal moments of inertia in cm(-1) A = 0.026243 B = 0.003193 C = 0.003106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1066.708291 B = 8766.112339 C = 9011.559076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.332 3.668 3 F -0.196 7.196 4 F -0.190 7.190 5 C -0.233 4.233 6 C 0.556 3.444 7 O -0.567 6.567 8 N -0.592 5.592 9 C 0.111 3.889 10 C -0.109 4.109 11 C -0.082 4.082 12 C 0.168 3.832 13 N -0.638 5.638 14 C -0.228 4.228 15 H 0.083 0.917 16 C -0.068 4.068 17 N -0.954 5.954 18 Si 0.974 3.026 19 H -0.265 1.265 20 H -0.294 1.294 21 H -0.294 1.294 22 C 0.131 3.869 23 C -0.088 4.088 24 C 0.123 3.877 25 C -0.114 4.114 26 C -0.135 4.135 27 H 0.072 0.928 28 H 0.096 0.904 29 H 0.105 0.895 30 H 0.106 0.894 31 H 0.086 0.914 32 H 0.083 0.917 33 H 0.062 0.938 34 H 0.033 0.967 35 H 0.014 0.986 36 H 0.246 0.754 37 H 0.049 0.951 38 H 0.053 0.947 39 H 0.058 0.942 40 H 0.052 0.948 41 H 0.082 0.918 42 H 0.083 0.917 43 H 0.129 0.871 44 H 0.109 0.891 45 H 0.116 0.884 46 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.466 -22.154 11.502 24.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C 0.296 3.704 3 F -0.177 7.177 4 F -0.171 7.171 5 C -0.237 4.237 6 C 0.344 3.656 7 O -0.447 6.447 8 N -0.323 5.323 9 C -0.011 4.011 10 C -0.148 4.148 11 C -0.083 4.083 12 C 0.042 3.958 13 N -0.364 5.364 14 C -0.357 4.357 15 H 0.100 0.900 16 C -0.261 4.261 17 N -0.604 5.604 18 Si 0.803 3.197 19 H -0.189 1.189 20 H -0.221 1.221 21 H -0.222 1.222 22 C 0.006 3.994 23 C -0.127 4.127 24 C 0.001 3.999 25 C -0.151 4.151 26 C -0.172 4.172 27 H 0.091 0.909 28 H 0.114 0.886 29 H 0.123 0.877 30 H 0.124 0.876 31 H 0.104 0.896 32 H 0.102 0.898 33 H 0.081 0.919 34 H 0.051 0.949 35 H 0.031 0.969 36 H 0.055 0.945 37 H 0.067 0.933 38 H 0.071 0.929 39 H 0.077 0.923 40 H 0.070 0.930 41 H 0.100 0.900 42 H 0.102 0.898 43 H 0.147 0.853 44 H 0.128 0.872 45 H 0.135 0.865 46 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -0.004 -22.066 10.974 24.644 hybrid contribution 0.009 1.804 -0.685 1.930 sum 0.005 -20.261 10.289 22.724 Atomic orbital electron populations 1.22723 0.90061 1.06553 1.05299 1.20102 0.94353 0.74694 0.81299 1.93018 1.90327 1.37780 1.96597 1.93012 1.90637 1.80892 1.52525 1.22222 1.09633 0.99234 0.92661 1.19354 0.81282 0.79501 0.85499 1.90677 1.29546 1.64582 1.59864 1.48086 1.33854 1.31585 1.18796 1.21939 0.89246 0.93372 0.96569 1.21656 1.02730 0.95091 0.95334 1.22100 0.95740 0.94971 0.95473 1.22156 0.94642 0.91833 0.87128 1.46326 1.52483 1.16856 1.20719 1.19454 1.21726 0.96309 0.98202 0.89963 1.25567 1.00216 0.99429 1.00905 1.70033 1.34006 1.22022 1.34322 0.85066 0.77139 0.78651 0.78840 1.18882 1.22125 1.22166 1.22763 0.94783 0.85908 0.95907 1.21337 0.96718 0.94559 1.00046 1.21544 1.02369 0.92078 0.83906 1.23209 0.99200 0.86885 1.05806 1.23403 0.88988 0.98617 1.06159 0.90853 0.88556 0.87657 0.87627 0.89631 0.89813 0.91920 0.94866 0.96866 0.94526 0.93347 0.92881 0.92327 0.92970 0.89991 0.89832 0.85295 0.87244 0.86538 0.85437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.23 9.16 71.98 0.66 -2.57 16 2 C 0.33 6.21 2.04 30.59 0.06 6.27 16 3 F -0.20 -4.42 12.75 44.97 0.57 -3.85 16 4 F -0.19 -3.29 15.64 44.97 0.70 -2.58 16 5 C -0.23 -4.24 0.72 -52.93 -0.04 -4.27 16 6 C 0.56 14.00 6.15 87.66 0.54 14.54 16 7 O -0.57 -17.90 16.40 -3.03 -0.05 -17.95 16 8 N -0.59 -14.87 2.95 -819.51 -2.42 -17.28 16 9 C 0.11 2.42 5.04 86.26 0.43 2.86 16 10 C -0.11 -3.03 4.97 30.44 0.15 -2.88 16 11 C -0.08 -2.90 0.77 -52.03 -0.04 -2.94 16 12 C 0.17 8.04 6.64 86.31 0.57 8.61 16 13 N -0.64 -32.41 3.53 -722.70 -2.55 -34.96 16 14 C -0.23 -12.85 10.70 84.03 0.90 -11.96 16 15 H 0.08 4.43 7.83 -2.91 -0.02 4.41 16 16 C -0.07 -3.95 5.50 84.86 0.47 -3.49 16 17 N -0.95 -58.64 11.39 21.65 0.25 -58.40 16 18 Si 0.97 46.42 29.55 68.60 2.03 48.45 16 19 H -0.26 -11.78 7.11 99.48 0.71 -11.07 16 20 H -0.29 -14.05 7.11 99.48 0.71 -13.34 16 21 H -0.29 -14.06 7.11 99.48 0.71 -13.35 16 22 C 0.13 4.98 7.73 86.32 0.67 5.65 16 23 C -0.09 -3.06 5.22 30.60 0.16 -2.90 16 24 C 0.12 3.49 6.30 86.42 0.54 4.04 16 25 C -0.11 -1.49 9.62 30.62 0.29 -1.19 16 26 C -0.13 -1.68 8.32 30.62 0.25 -1.42 16 27 H 0.07 1.54 7.84 -2.39 -0.02 1.53 16 28 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 29 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 30 H 0.11 2.01 3.82 -2.38 -0.01 2.00 16 31 H 0.09 1.63 8.07 -2.39 -0.02 1.61 16 32 H 0.08 2.21 8.12 -2.38 -0.02 2.19 16 33 H 0.06 1.84 7.09 -2.39 -0.02 1.82 16 34 H 0.03 1.82 7.12 -2.39 -0.02 1.81 16 35 H 0.01 0.67 8.09 -2.39 -0.02 0.65 16 36 H 0.25 14.72 8.31 -92.71 -0.77 13.95 16 37 H 0.05 1.72 8.07 -2.39 -0.02 1.70 16 38 H 0.05 1.89 7.41 -2.39 -0.02 1.87 16 39 H 0.06 2.37 8.01 -2.38 -0.02 2.36 16 40 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 41 H 0.08 2.14 7.49 -2.39 -0.02 2.12 16 42 H 0.08 2.49 6.97 -2.38 -0.02 2.47 16 43 H 0.13 1.23 7.89 -2.39 -0.02 1.21 16 44 H 0.11 1.53 8.14 -2.39 -0.02 1.51 16 45 H 0.12 1.33 8.14 -2.38 -0.02 1.31 16 46 H 0.13 1.27 7.67 -2.39 -0.02 1.25 16 Total: -1.00 -70.74 362.95 5.14 -65.59 By element: Atomic # 1 Polarization: 11.68 SS G_CDS: 0.98 Total: 12.66 kcal Atomic # 6 Polarization: 2.70 SS G_CDS: 5.63 Total: 8.33 kcal Atomic # 7 Polarization: -105.92 SS G_CDS: -4.72 Total: -110.64 kcal Atomic # 8 Polarization: -17.90 SS G_CDS: -0.05 Total: -17.95 kcal Atomic # 9 Polarization: -7.71 SS G_CDS: 1.28 Total: -6.43 kcal Atomic # 14 Polarization: 46.42 SS G_CDS: 2.03 Total: 48.45 kcal Total: -70.74 5.14 -65.59 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035799372.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.166 kcal (2) G-P(sol) polarization free energy of solvation -70.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.592 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds