Wall clock time and date at job start Tue Mar 31 2020 14:53:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 F 1.39892 * 109.47473 * 2 1 4 4 F 1.39903 * 109.46746 * 239.99997 * 2 1 3 5 5 C 1.52997 * 109.46874 * 120.00737 * 2 1 3 6 6 C 1.50697 * 115.55051 * 304.70778 * 5 2 1 7 7 O 1.21279 * 119.99796 * 108.95819 * 6 5 2 8 8 N 1.34773 * 120.00377 * 288.96524 * 6 5 2 9 9 C 1.47222 * 121.35945 * 354.33530 * 8 6 5 10 10 C 1.53045 * 108.18873 * 237.83433 * 9 8 6 11 11 C 1.53152 * 110.68706 * 302.89063 * 10 9 8 12 12 H 1.09007 * 111.79541 * 288.55052 * 11 10 9 13 13 C 1.53935 * 111.34976 * 54.49824 * 11 10 9 14 14 H 1.09000 * 109.51180 * 189.01998 * 13 11 10 15 15 C 1.54193 * 102.21217 * 72.96640 * 13 11 10 16 16 C 1.54726 * 102.06538 * 37.57268 * 15 13 11 17 17 N 1.47212 * 107.23706 * 338.47596 * 16 15 13 18 18 C 1.36945 * 125.88959 * 176.53481 * 17 16 15 19 19 H 1.08002 * 120.00046 * 179.69402 * 18 17 16 20 20 C 1.38813 * 119.99606 * 359.68443 * 18 17 16 21 21 N 1.31623 * 120.00136 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 119.99901 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47181 * 90.00380 * 22 20 18 24 24 H 1.48505 * 109.47150 * 210.00498 * 22 20 18 25 25 H 1.48501 * 109.47017 * 330.00208 * 22 20 18 26 26 C 1.46710 * 121.36543 * 174.31613 * 8 6 5 27 27 C 1.53005 * 117.50209 * 90.38596 * 5 2 1 28 28 C 1.53007 * 117.49841 * 159.04350 * 5 2 1 29 29 H 1.09003 * 109.47188 * 305.43491 * 1 2 3 30 30 H 1.09004 * 109.47165 * 65.42982 * 1 2 3 31 31 H 1.09001 * 109.47282 * 185.43057 * 1 2 3 32 32 H 1.09002 * 109.79923 * 357.63095 * 9 8 6 33 33 H 1.08990 * 109.80448 * 118.50723 * 9 8 6 34 34 H 1.09000 * 109.73553 * 182.29052 * 10 9 8 35 35 H 1.09008 * 108.83263 * 62.90632 * 10 9 8 36 36 H 1.08997 * 110.91008 * 155.75967 * 15 13 11 37 37 H 1.08994 * 110.91633 * 279.37813 * 15 13 11 38 38 H 1.08994 * 109.88863 * 219.07024 * 16 15 13 39 39 H 1.08997 * 109.89229 * 97.88054 * 16 15 13 40 40 H 0.96998 * 120.00022 * 180.02562 * 21 20 18 41 41 H 1.09007 * 109.14019 * 7.38495 * 26 8 6 42 42 H 1.09001 * 109.10281 * 248.21329 * 26 8 6 43 43 H 1.09000 * 117.49779 * 215.00265 * 27 5 2 44 44 H 1.09000 * 117.49452 * 0.02562 * 27 5 2 45 45 H 1.08998 * 117.49811 * 359.97438 * 28 5 2 46 46 H 1.08998 * 117.49630 * 144.96663 * 28 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 9 1.9964 1.3189 0.0000 4 9 1.9963 -0.6595 -1.1423 5 6 2.0399 -0.7214 1.2491 6 6 1.5267 -0.1890 2.5622 7 8 0.7319 -0.8367 3.2100 8 7 1.9507 1.0068 3.0166 9 6 3.0048 1.7615 2.3190 10 6 4.1495 2.0061 3.3050 11 6 3.6449 2.7465 4.5470 12 1 3.4006 3.7859 4.3272 13 6 2.4640 2.0056 5.1999 14 1 2.0270 2.6315 5.9780 15 6 3.1587 0.7902 5.8462 16 6 4.4878 1.4051 6.3456 17 7 4.7222 2.6307 5.5644 18 6 5.7576 3.5094 5.7407 19 1 5.8407 4.3802 5.1073 20 6 6.7002 3.2810 6.7339 21 7 6.5990 2.2196 7.5057 22 14 8.1122 4.4800 6.9749 23 1 7.7097 5.5302 7.9446 24 1 9.2963 3.7516 7.4972 25 1 8.4531 5.1111 5.6747 26 6 1.3806 1.6099 4.2264 27 6 2.2840 -2.2282 1.1447 28 6 3.4703 -1.2636 1.2174 29 1 -0.3634 0.5958 0.8373 30 1 -0.3634 0.4273 -0.9346 31 1 -0.3634 -1.0230 0.0973 32 1 3.3682 1.1868 1.4670 33 1 2.6099 2.7186 1.9784 34 1 4.9280 2.5994 2.8254 35 1 4.5666 1.0448 3.6054 36 1 2.5715 0.4040 6.6793 37 1 3.3441 0.0100 5.1080 38 1 5.3049 0.7017 6.1859 39 1 4.4082 1.6501 7.4047 40 1 7.2574 2.0602 8.1999 41 1 0.7153 0.8910 4.7047 42 1 0.8091 2.4954 3.9482 43 1 2.0732 -2.8345 2.0256 44 1 2.0817 -2.7055 0.1858 45 1 4.0479 -1.1067 0.3064 46 1 4.0402 -1.2348 2.1461 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036822171.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:53:23 Heat of formation + Delta-G solvation = -71.962975 kcal Electronic energy + Delta-G solvation = -30636.341581 eV Core-core repulsion = 26391.564304 eV Total energy + Delta-G solvation = -4244.777277 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 328.170 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -49.30030 -47.28030 -40.53104 -38.61132 -36.64953 -35.24295 -32.57947 -31.63820 -31.36461 -29.52137 -28.30790 -25.74725 -24.76615 -23.74945 -22.83462 -22.65548 -22.09766 -20.02575 -19.46452 -18.22627 -17.91620 -17.63574 -16.83087 -16.56967 -16.20359 -15.71498 -15.11349 -14.76917 -14.60673 -14.30960 -14.04240 -13.81950 -13.70167 -13.54510 -13.37366 -13.07847 -12.90627 -12.74984 -12.65017 -12.47537 -11.99439 -11.95345 -11.80017 -11.61555 -11.58748 -11.32942 -11.07354 -10.88027 -10.80525 -10.74263 -10.51702 -10.09541 -9.94989 -9.87625 -9.74762 -9.60893 -9.52385 -8.63537 -8.45766 -6.84542 -5.70482 -3.04123 2.37488 2.85642 3.20468 3.39296 3.44253 3.44863 3.46319 3.81971 4.00248 4.27899 4.32181 4.47909 4.62433 4.69933 5.02283 5.15118 5.20140 5.28740 5.34222 5.35642 5.38777 5.45966 5.49919 5.57734 5.60681 5.61377 5.69258 5.82298 5.86953 5.90604 5.97394 6.08414 6.25229 6.29760 6.38528 6.53278 6.60260 6.74587 6.89831 7.06818 7.47964 7.55891 7.63975 7.83390 8.13081 8.24541 9.21337 9.81341 10.49257 11.40750 Molecular weight = 328.17amu Principal moments of inertia in cm(-1) A = 0.021049 B = 0.003615 C = 0.003468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1329.906872 B = 7743.617414 C = 8072.969023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.334 3.666 3 F -0.188 7.188 4 F -0.194 7.194 5 C -0.219 4.219 6 C 0.560 3.440 7 O -0.536 6.536 8 N -0.590 5.590 9 C 0.103 3.897 10 C -0.143 4.143 11 C 0.165 3.835 12 H 0.060 0.940 13 C -0.112 4.112 14 H 0.081 0.919 15 C -0.134 4.134 16 C 0.179 3.821 17 N -0.602 5.602 18 C -0.226 4.226 19 H 0.077 0.923 20 C -0.008 4.008 21 N -0.921 5.921 22 Si 0.910 3.090 23 H -0.289 1.289 24 H -0.291 1.291 25 H -0.282 1.282 26 C 0.125 3.875 27 C -0.124 4.124 28 C -0.145 4.145 29 H 0.088 0.912 30 H 0.084 0.916 31 H 0.093 0.907 32 H 0.086 0.914 33 H 0.069 0.931 34 H 0.070 0.930 35 H 0.064 0.936 36 H 0.057 0.943 37 H 0.052 0.948 38 H 0.034 0.966 39 H 0.050 0.950 40 H 0.251 0.749 41 H 0.087 0.913 42 H 0.064 0.936 43 H 0.114 0.886 44 H 0.111 0.889 45 H 0.112 0.888 46 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.868 -5.825 -15.159 20.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C 0.297 3.703 3 F -0.169 7.169 4 F -0.175 7.175 5 C -0.223 4.223 6 C 0.346 3.654 7 O -0.413 6.413 8 N -0.322 5.322 9 C -0.020 4.020 10 C -0.183 4.183 11 C 0.058 3.942 12 H 0.078 0.922 13 C -0.132 4.132 14 H 0.099 0.901 15 C -0.172 4.172 16 C 0.055 3.945 17 N -0.326 5.326 18 C -0.354 4.354 19 H 0.095 0.905 20 C -0.204 4.204 21 N -0.569 5.569 22 Si 0.740 3.260 23 H -0.217 1.217 24 H -0.218 1.218 25 H -0.207 1.207 26 C 0.003 3.997 27 C -0.161 4.161 28 C -0.182 4.182 29 H 0.107 0.893 30 H 0.103 0.897 31 H 0.111 0.889 32 H 0.104 0.896 33 H 0.087 0.913 34 H 0.089 0.911 35 H 0.083 0.917 36 H 0.076 0.924 37 H 0.071 0.929 38 H 0.052 0.948 39 H 0.068 0.932 40 H 0.062 0.938 41 H 0.106 0.894 42 H 0.082 0.918 43 H 0.132 0.868 44 H 0.129 0.871 45 H 0.130 0.870 46 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -12.049 -6.105 -14.648 19.925 hybrid contribution 1.081 0.807 0.089 1.352 sum -10.968 -5.298 -14.559 18.982 Atomic orbital electron populations 1.22713 0.90728 1.05976 1.05215 1.20022 0.93739 0.75140 0.81354 1.93032 1.90315 1.37007 1.96546 1.93005 1.90657 1.81043 1.52764 1.22340 1.05041 1.00569 0.94312 1.18790 0.81125 0.80712 0.84762 1.90690 1.35110 1.57329 1.58156 1.47997 1.38489 1.18870 1.26816 1.22161 0.88198 0.96193 0.95444 1.22578 0.96689 1.02159 0.96904 1.21177 0.88040 0.95978 0.89038 0.92225 1.21860 0.95340 0.98604 0.97429 0.90071 1.22737 0.99065 0.96376 0.99050 1.21192 0.90673 0.87302 0.95361 1.44950 1.26556 1.25122 1.35957 1.19044 1.00686 1.02121 1.13579 0.90521 1.24783 0.99172 0.98035 0.98438 1.69969 1.36762 1.27530 1.22638 0.86155 0.81927 0.80104 0.77780 1.21683 1.21764 1.20747 1.21068 0.95924 0.97861 0.84884 1.23100 0.99740 0.88281 1.05002 1.23229 0.88818 1.00793 1.05338 0.89306 0.89729 0.88854 0.89588 0.91263 0.91147 0.91711 0.92426 0.92892 0.94807 0.93154 0.93833 0.89425 0.91776 0.86806 0.87054 0.87012 0.86947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.68 9.04 37.16 0.34 -1.34 16 2 C 0.33 3.57 2.09 -26.73 -0.06 3.51 16 3 F -0.19 -2.22 13.57 2.25 0.03 -2.19 16 4 F -0.19 -2.07 15.64 2.25 0.04 -2.04 16 5 C -0.22 -2.52 0.85 -155.66 -0.13 -2.66 16 6 C 0.56 7.99 5.99 -10.99 -0.07 7.93 16 7 O -0.54 -9.03 16.31 5.56 0.09 -8.94 16 8 N -0.59 -8.39 2.81 -174.14 -0.49 -8.87 16 9 C 0.10 1.42 4.66 -3.62 -0.02 1.40 16 10 C -0.14 -2.43 5.28 -26.63 -0.14 -2.57 16 11 C 0.17 3.17 3.59 -66.19 -0.24 2.93 16 12 H 0.06 1.13 8.14 -51.92 -0.42 0.71 16 13 C -0.11 -1.92 2.89 -90.54 -0.26 -2.18 16 14 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 15 C -0.13 -2.56 5.90 -25.20 -0.15 -2.71 16 16 C 0.18 4.31 5.10 -2.74 -0.01 4.30 16 17 N -0.60 -14.68 2.88 -161.78 -0.47 -15.14 16 18 C -0.23 -6.11 10.31 -15.06 -0.16 -6.26 16 19 H 0.08 2.00 7.83 -52.49 -0.41 1.59 16 20 C -0.01 -0.22 5.49 -17.43 -0.10 -0.32 16 21 N -0.92 -26.90 10.35 55.49 0.57 -26.32 16 22 Si 0.91 21.90 29.55 -169.99 -5.02 16.88 16 23 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 24 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 25 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 26 C 0.13 1.81 5.85 -4.96 -0.03 1.78 16 27 C -0.12 -1.23 9.50 -26.69 -0.25 -1.48 16 28 C -0.14 -1.53 8.52 -26.69 -0.23 -1.75 16 29 H 0.09 0.85 7.65 -51.93 -0.40 0.46 16 30 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.09 0.76 8.14 -51.93 -0.42 0.33 16 32 H 0.09 1.11 4.12 -51.93 -0.21 0.89 16 33 H 0.07 0.90 8.05 -51.93 -0.42 0.48 16 34 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 35 H 0.06 1.23 6.99 -51.92 -0.36 0.87 16 36 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 37 H 0.05 1.01 7.46 -51.93 -0.39 0.63 16 38 H 0.03 0.91 7.67 -51.93 -0.40 0.51 16 39 H 0.05 1.36 7.23 -51.93 -0.38 0.98 16 40 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 41 H 0.09 1.32 7.03 -51.92 -0.37 0.96 16 42 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 43 H 0.11 1.19 8.09 -51.93 -0.42 0.77 16 44 H 0.11 0.91 7.64 -51.93 -0.40 0.51 16 45 H 0.11 1.05 7.92 -51.93 -0.41 0.64 16 46 H 0.11 1.30 8.14 -51.93 -0.42 0.88 16 LS Contribution 358.63 15.07 5.40 5.40 Total: -1.00 -30.71 358.63 -8.42 -39.12 By element: Atomic # 1 Polarization: 8.60 SS G_CDS: -7.07 Total: 1.52 kcal Atomic # 6 Polarization: 2.08 SS G_CDS: -1.50 Total: 0.58 kcal Atomic # 7 Polarization: -49.96 SS G_CDS: -0.38 Total: -50.34 kcal Atomic # 8 Polarization: -9.03 SS G_CDS: 0.09 Total: -8.94 kcal Atomic # 9 Polarization: -4.29 SS G_CDS: 0.07 Total: -4.22 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -30.71 -8.42 -39.12 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036822171.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.840 kcal (2) G-P(sol) polarization free energy of solvation -30.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.123 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds