Wall clock time and date at job start Tue Mar 31 2020 14:53:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 F 1.39892 * 109.47473 * 2 1 4 4 F 1.39903 * 109.46746 * 239.99997 * 2 1 3 5 5 C 1.52997 * 109.46874 * 120.00737 * 2 1 3 6 6 C 1.50697 * 115.55051 * 304.70778 * 5 2 1 7 7 O 1.21279 * 119.99796 * 108.95819 * 6 5 2 8 8 N 1.34773 * 120.00377 * 288.96524 * 6 5 2 9 9 C 1.47222 * 121.35945 * 354.33530 * 8 6 5 10 10 C 1.53045 * 108.18873 * 237.83433 * 9 8 6 11 11 C 1.53152 * 110.68706 * 302.89063 * 10 9 8 12 12 H 1.09007 * 111.79541 * 288.55052 * 11 10 9 13 13 C 1.53935 * 111.34976 * 54.49824 * 11 10 9 14 14 H 1.09000 * 109.51180 * 189.01998 * 13 11 10 15 15 C 1.54193 * 102.21217 * 72.96640 * 13 11 10 16 16 C 1.54726 * 102.06538 * 37.57268 * 15 13 11 17 17 N 1.47212 * 107.23706 * 338.47596 * 16 15 13 18 18 C 1.36945 * 125.88959 * 176.53481 * 17 16 15 19 19 H 1.08002 * 120.00046 * 179.69402 * 18 17 16 20 20 C 1.38813 * 119.99606 * 359.68443 * 18 17 16 21 21 N 1.31623 * 120.00136 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 119.99901 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47181 * 90.00380 * 22 20 18 24 24 H 1.48505 * 109.47150 * 210.00498 * 22 20 18 25 25 H 1.48501 * 109.47017 * 330.00208 * 22 20 18 26 26 C 1.46710 * 121.36543 * 174.31613 * 8 6 5 27 27 C 1.53005 * 117.50209 * 90.38596 * 5 2 1 28 28 C 1.53007 * 117.49841 * 159.04350 * 5 2 1 29 29 H 1.09003 * 109.47188 * 305.43491 * 1 2 3 30 30 H 1.09004 * 109.47165 * 65.42982 * 1 2 3 31 31 H 1.09001 * 109.47282 * 185.43057 * 1 2 3 32 32 H 1.09002 * 109.79923 * 357.63095 * 9 8 6 33 33 H 1.08990 * 109.80448 * 118.50723 * 9 8 6 34 34 H 1.09000 * 109.73553 * 182.29052 * 10 9 8 35 35 H 1.09008 * 108.83263 * 62.90632 * 10 9 8 36 36 H 1.08997 * 110.91008 * 155.75967 * 15 13 11 37 37 H 1.08994 * 110.91633 * 279.37813 * 15 13 11 38 38 H 1.08994 * 109.88863 * 219.07024 * 16 15 13 39 39 H 1.08997 * 109.89229 * 97.88054 * 16 15 13 40 40 H 0.96998 * 120.00022 * 180.02562 * 21 20 18 41 41 H 1.09007 * 109.14019 * 7.38495 * 26 8 6 42 42 H 1.09001 * 109.10281 * 248.21329 * 26 8 6 43 43 H 1.09000 * 117.49779 * 215.00265 * 27 5 2 44 44 H 1.09000 * 117.49452 * 0.02562 * 27 5 2 45 45 H 1.08998 * 117.49811 * 359.97438 * 28 5 2 46 46 H 1.08998 * 117.49630 * 144.96663 * 28 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 9 1.9964 1.3189 0.0000 4 9 1.9963 -0.6595 -1.1423 5 6 2.0399 -0.7214 1.2491 6 6 1.5267 -0.1890 2.5622 7 8 0.7319 -0.8367 3.2100 8 7 1.9507 1.0068 3.0166 9 6 3.0048 1.7615 2.3190 10 6 4.1495 2.0061 3.3050 11 6 3.6449 2.7465 4.5470 12 1 3.4006 3.7859 4.3272 13 6 2.4640 2.0056 5.1999 14 1 2.0270 2.6315 5.9780 15 6 3.1587 0.7902 5.8462 16 6 4.4878 1.4051 6.3456 17 7 4.7222 2.6307 5.5644 18 6 5.7576 3.5094 5.7407 19 1 5.8407 4.3802 5.1073 20 6 6.7002 3.2810 6.7339 21 7 6.5990 2.2196 7.5057 22 14 8.1122 4.4800 6.9749 23 1 7.7097 5.5302 7.9446 24 1 9.2963 3.7516 7.4972 25 1 8.4531 5.1111 5.6747 26 6 1.3806 1.6099 4.2264 27 6 2.2840 -2.2282 1.1447 28 6 3.4703 -1.2636 1.2174 29 1 -0.3634 0.5958 0.8373 30 1 -0.3634 0.4273 -0.9346 31 1 -0.3634 -1.0230 0.0973 32 1 3.3682 1.1868 1.4670 33 1 2.6099 2.7186 1.9784 34 1 4.9280 2.5994 2.8254 35 1 4.5666 1.0448 3.6054 36 1 2.5715 0.4040 6.6793 37 1 3.3441 0.0100 5.1080 38 1 5.3049 0.7017 6.1859 39 1 4.4082 1.6501 7.4047 40 1 7.2574 2.0602 8.1999 41 1 0.7153 0.8910 4.7047 42 1 0.8091 2.4954 3.9482 43 1 2.0732 -2.8345 2.0256 44 1 2.0817 -2.7055 0.1858 45 1 4.0479 -1.1067 0.3064 46 1 4.0402 -1.2348 2.1461 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036822171.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:53:22 Heat of formation + Delta-G solvation = -88.562260 kcal Electronic energy + Delta-G solvation = -30637.061380 eV Core-core repulsion = 26391.564304 eV Total energy + Delta-G solvation = -4245.497076 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 328.170 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -50.12450 -48.10889 -41.72176 -40.00849 -37.65781 -36.71016 -34.41669 -32.87114 -32.34100 -31.19124 -29.97693 -27.04904 -26.22812 -25.05563 -24.05642 -23.62551 -23.19626 -21.89936 -20.62854 -19.37806 -19.10367 -18.72908 -18.47071 -17.45309 -17.27831 -16.79717 -16.67254 -16.41193 -15.84483 -15.67583 -15.37336 -14.98300 -14.77146 -14.53607 -14.43055 -14.24876 -14.20475 -14.02747 -13.71814 -13.48910 -13.28149 -13.26751 -13.11858 -12.91518 -12.81346 -12.68048 -12.61288 -12.58359 -12.40957 -12.01889 -11.73289 -11.67947 -11.51685 -11.41945 -11.31181 -11.18568 -10.85391 -10.69498 -9.69553 -8.87055 -7.81890 -5.16658 1.30475 1.46264 1.47572 1.56009 1.79883 2.33993 2.50191 2.60060 3.02139 3.11901 3.35364 3.36378 3.49577 3.53001 3.78644 3.83602 3.87769 3.95803 4.04077 4.17938 4.27966 4.39529 4.44850 4.53807 4.57324 4.57814 4.62429 4.67876 4.76780 4.79732 4.82225 4.86876 4.89374 4.94992 5.00589 5.02997 5.09701 5.33074 5.43393 5.51837 5.59235 5.66184 5.77828 6.19998 6.33608 7.00561 7.11283 7.78978 8.46191 9.28563 Molecular weight = 328.17amu Principal moments of inertia in cm(-1) A = 0.021049 B = 0.003615 C = 0.003468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1329.906872 B = 7743.617414 C = 8072.969023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.335 3.665 3 F -0.195 7.195 4 F -0.192 7.192 5 C -0.228 4.228 6 C 0.561 3.439 7 O -0.563 6.563 8 N -0.593 5.593 9 C 0.116 3.884 10 C -0.131 4.131 11 C 0.159 3.841 12 H 0.070 0.930 13 C -0.099 4.099 14 H 0.083 0.917 15 C -0.119 4.119 16 C 0.192 3.808 17 N -0.620 5.620 18 C -0.230 4.230 19 H 0.086 0.914 20 C -0.069 4.069 21 N -0.955 5.955 22 Si 0.974 3.026 23 H -0.288 1.288 24 H -0.299 1.299 25 H -0.267 1.267 26 C 0.131 3.869 27 C -0.112 4.112 28 C -0.145 4.145 29 H 0.081 0.919 30 H 0.101 0.899 31 H 0.100 0.900 32 H 0.098 0.902 33 H 0.088 0.912 34 H 0.065 0.935 35 H 0.039 0.961 36 H 0.069 0.931 37 H 0.052 0.948 38 H -0.007 1.007 39 H 0.013 0.987 40 H 0.243 0.757 41 H 0.086 0.914 42 H 0.094 0.906 43 H 0.106 0.894 44 H 0.134 0.866 45 H 0.126 0.874 46 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.277 -5.206 -17.628 22.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C 0.299 3.701 3 F -0.176 7.176 4 F -0.173 7.173 5 C -0.232 4.232 6 C 0.348 3.652 7 O -0.442 6.442 8 N -0.324 5.324 9 C -0.006 4.006 10 C -0.171 4.171 11 C 0.054 3.946 12 H 0.088 0.912 13 C -0.119 4.119 14 H 0.101 0.899 15 C -0.157 4.157 16 C 0.066 3.934 17 N -0.345 5.345 18 C -0.359 4.359 19 H 0.104 0.896 20 C -0.262 4.262 21 N -0.605 5.605 22 Si 0.803 3.197 23 H -0.215 1.215 24 H -0.226 1.226 25 H -0.192 1.192 26 C 0.008 3.992 27 C -0.149 4.149 28 C -0.182 4.182 29 H 0.100 0.900 30 H 0.120 0.880 31 H 0.119 0.881 32 H 0.116 0.884 33 H 0.107 0.893 34 H 0.084 0.916 35 H 0.058 0.942 36 H 0.088 0.912 37 H 0.071 0.929 38 H 0.011 0.989 39 H 0.031 0.969 40 H 0.053 0.947 41 H 0.104 0.896 42 H 0.112 0.888 43 H 0.124 0.876 44 H 0.152 0.848 45 H 0.144 0.856 46 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -13.484 -5.468 -17.165 22.503 hybrid contribution 1.518 0.594 0.855 1.841 sum -11.966 -4.874 -16.311 20.808 Atomic orbital electron populations 1.22731 0.89261 1.06550 1.05878 1.20098 0.94650 0.74591 0.80795 1.93012 1.90507 1.37519 1.96543 1.93009 1.90760 1.80994 1.52542 1.22315 1.05644 1.01763 0.93469 1.19161 0.80502 0.80132 0.85384 1.90677 1.36374 1.57891 1.59240 1.48060 1.38509 1.19093 1.26742 1.22084 0.86801 0.97304 0.94446 1.22348 0.97796 1.00278 0.96680 1.21470 0.87304 0.97195 0.88677 0.91239 1.21775 0.95216 0.96967 0.97941 0.89876 1.22545 0.96661 0.97015 0.99472 1.20854 0.91954 0.86906 0.93643 1.45220 1.27307 1.24678 1.37259 1.19464 1.01082 1.02417 1.12977 0.89648 1.25601 1.01959 0.99826 0.98793 1.70200 1.37458 1.29475 1.23342 0.85130 0.78581 0.77914 0.78046 1.21501 1.22629 1.19162 1.21011 0.94709 0.99030 0.84444 1.23188 0.98490 0.87359 1.05840 1.23248 0.88603 1.01071 1.05292 0.90010 0.87972 0.88114 0.88359 0.89349 0.91638 0.94223 0.91245 0.92940 0.98868 0.96905 0.94742 0.89586 0.88835 0.87555 0.84825 0.85591 0.88444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.77 9.04 71.98 0.65 -2.12 16 2 C 0.34 6.20 2.09 30.59 0.06 6.26 16 3 F -0.19 -4.00 13.57 44.97 0.61 -3.39 16 4 F -0.19 -3.51 15.64 44.97 0.70 -2.80 16 5 C -0.23 -4.76 0.85 -52.93 -0.05 -4.81 16 6 C 0.56 14.95 5.99 87.66 0.52 15.48 16 7 O -0.56 -18.12 16.31 -3.02 -0.05 -18.17 16 8 N -0.59 -15.55 2.81 -823.26 -2.31 -17.87 16 9 C 0.12 2.92 4.66 86.26 0.40 3.32 16 10 C -0.13 -4.33 5.28 30.66 0.16 -4.17 16 11 C 0.16 5.96 3.59 44.95 0.16 6.12 16 12 H 0.07 2.49 8.14 -2.38 -0.02 2.47 16 13 C -0.10 -3.26 2.89 -10.75 -0.03 -3.29 16 14 H 0.08 2.74 8.14 -2.39 -0.02 2.72 16 15 C -0.12 -4.57 5.90 31.59 0.19 -4.38 16 16 C 0.19 9.65 5.10 86.83 0.44 10.09 16 17 N -0.62 -30.81 2.88 -665.74 -1.92 -32.72 16 18 C -0.23 -12.59 10.31 84.03 0.87 -11.72 16 19 H 0.09 4.41 7.83 -2.91 -0.02 4.39 16 20 C -0.07 -3.94 5.49 84.86 0.47 -3.47 16 21 N -0.96 -58.19 10.35 21.65 0.22 -57.97 16 22 Si 0.97 45.78 29.55 68.60 2.03 47.80 16 23 H -0.29 -13.34 7.11 99.48 0.71 -12.63 16 24 H -0.30 -14.34 7.11 99.48 0.71 -13.63 16 25 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 26 C 0.13 3.46 5.85 85.67 0.50 3.96 16 27 C -0.11 -1.97 9.50 30.62 0.29 -1.68 16 28 C -0.15 -2.81 8.52 30.62 0.26 -2.55 16 29 H 0.08 1.35 7.65 -2.39 -0.02 1.33 16 30 H 0.10 1.15 8.14 -2.38 -0.02 1.13 16 31 H 0.10 1.34 8.14 -2.39 -0.02 1.33 16 32 H 0.10 2.29 4.12 -2.39 -0.01 2.28 16 33 H 0.09 1.96 8.05 -2.39 -0.02 1.94 16 34 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 35 H 0.04 1.51 6.99 -2.38 -0.02 1.49 16 36 H 0.07 2.50 8.14 -2.39 -0.02 2.48 16 37 H 0.05 2.02 7.46 -2.39 -0.02 2.01 16 38 H -0.01 -0.40 7.67 -2.39 -0.02 -0.41 16 39 H 0.01 0.73 7.23 -2.39 -0.02 0.71 16 40 H 0.24 14.54 8.31 -92.71 -0.77 13.77 16 41 H 0.09 2.39 7.03 -2.38 -0.02 2.38 16 42 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 43 H 0.11 2.08 8.09 -2.39 -0.02 2.06 16 44 H 0.13 1.76 7.64 -2.39 -0.02 1.75 16 45 H 0.13 2.08 7.92 -2.39 -0.02 2.06 16 46 H 0.10 2.20 8.14 -2.39 -0.02 2.18 16 Total: -1.00 -68.31 358.63 5.17 -63.15 By element: Atomic # 1 Polarization: 13.97 SS G_CDS: 0.98 Total: 14.95 kcal Atomic # 6 Polarization: 2.13 SS G_CDS: 4.90 Total: 7.03 kcal Atomic # 7 Polarization: -104.55 SS G_CDS: -4.01 Total: -108.56 kcal Atomic # 8 Polarization: -18.12 SS G_CDS: -0.05 Total: -18.17 kcal Atomic # 9 Polarization: -7.51 SS G_CDS: 1.31 Total: -6.20 kcal Atomic # 14 Polarization: 45.78 SS G_CDS: 2.03 Total: 47.80 kcal Total: -68.31 5.17 -63.15 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036822171.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.416 kcal (2) G-P(sol) polarization free energy of solvation -68.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.146 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds