Wall clock time and date at job start Tue Mar 31 2020 14:53:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 F 1.39902 * 109.47413 * 2 1 4 4 F 1.39905 * 109.47408 * 240.00020 * 2 1 3 5 5 C 1.53004 * 109.47517 * 120.00039 * 2 1 3 6 6 C 1.50696 * 115.54949 * 295.85009 * 5 2 1 7 7 O 1.21279 * 120.00456 * 273.67741 * 6 5 2 8 8 N 1.34787 * 119.99887 * 93.67484 * 6 5 2 9 9 C 1.46593 * 119.68299 * 354.97232 * 8 6 5 10 10 C 1.53961 * 110.58152 * 227.81322 * 9 8 6 11 11 C 1.51524 * 107.34367 * 308.95269 * 10 9 8 12 12 H 1.08992 * 108.81315 * 306.55342 * 11 10 9 13 13 C 1.55363 * 107.78239 * 64.85780 * 11 10 9 14 14 H 1.09000 * 111.50907 * 51.16342 * 13 11 10 15 15 C 1.53740 * 100.22251 * 169.05705 * 13 11 10 16 16 C 1.55284 * 101.84306 * 320.91106 * 15 13 11 17 17 N 1.45466 * 117.33723 * 181.88958 * 11 10 9 18 18 C 1.36935 * 126.40596 * 30.67909 * 17 11 10 19 19 H 1.08005 * 119.99768 * 359.97438 * 18 17 11 20 20 C 1.38813 * 120.00475 * 179.97438 * 18 17 11 21 21 N 1.31618 * 119.99491 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 120.00224 * 179.97438 * 20 18 17 23 23 H 1.48491 * 109.46978 * 59.99968 * 22 20 18 24 24 H 1.48503 * 109.46879 * 180.02562 * 22 20 18 25 25 H 1.48497 * 109.46993 * 299.99803 * 22 20 18 26 26 C 1.47713 * 119.68125 * 174.97426 * 8 6 5 27 27 C 1.52997 * 117.49334 * 81.51574 * 5 2 1 28 28 C 1.52999 * 117.50194 * 150.17616 * 5 2 1 29 29 H 1.09003 * 109.47322 * 296.62717 * 1 2 3 30 30 H 1.08997 * 109.47346 * 56.62932 * 1 2 3 31 31 H 1.09006 * 109.47337 * 176.62907 * 1 2 3 32 32 H 1.08994 * 109.25097 * 107.53077 * 9 8 6 33 33 H 1.09000 * 109.25524 * 348.09449 * 9 8 6 34 34 H 1.09003 * 109.88178 * 189.49237 * 10 9 8 35 35 H 1.08999 * 109.88059 * 68.40858 * 10 9 8 36 36 H 1.09002 * 110.95079 * 79.05304 * 15 13 11 37 37 H 1.09000 * 110.95377 * 202.76712 * 15 13 11 38 38 H 1.08998 * 109.92005 * 141.82603 * 16 15 13 39 39 H 1.09004 * 109.92050 * 263.12798 * 16 15 13 40 40 H 0.97006 * 119.99548 * 179.97438 * 21 20 18 41 41 H 1.08999 * 110.07543 * 8.73326 * 26 8 6 42 42 H 1.09004 * 110.06845 * 247.15788 * 26 8 6 43 43 H 1.09004 * 117.49963 * 215.00694 * 27 5 2 44 44 H 1.08999 * 117.50737 * 0.02562 * 27 5 2 45 45 H 1.09003 * 117.49501 * 359.97438 * 28 5 2 46 46 H 1.08993 * 117.49637 * 145.00159 * 28 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 9 1.9963 1.3190 0.0000 4 9 1.9963 -0.6595 -1.1423 5 6 2.0400 -0.7213 1.2492 6 6 1.6978 -0.0668 2.5628 7 8 2.4171 0.7987 3.0148 8 7 0.5922 -0.4434 3.2355 9 6 -0.3307 -1.4095 2.6323 10 6 -1.7837 -0.9127 2.7444 11 6 -2.0226 -0.5383 4.1931 12 1 -1.7530 -1.3851 4.8241 13 6 -1.0993 0.6648 4.5307 14 1 -1.2049 1.4669 3.8002 15 6 -1.6733 1.0743 5.8968 16 6 -3.1977 0.8809 5.6729 17 7 -3.3541 -0.0761 4.5528 18 6 -4.5320 -0.4551 3.9662 19 1 -4.5259 -1.1645 3.1518 20 6 -5.7338 0.0723 4.4182 21 7 -5.7412 0.9364 5.4110 22 14 -7.3405 -0.4443 3.6176 23 1 -7.5159 -1.9117 3.7617 24 1 -8.4706 0.2572 4.2780 25 1 -7.3121 -0.0883 2.1762 26 6 0.3222 0.1213 4.5735 27 6 2.0867 -2.2501 1.2126 28 6 3.3856 -1.4425 1.1487 29 1 -0.3634 0.4606 0.9187 30 1 -0.3634 0.5652 -0.8582 31 1 -0.3634 -1.0259 -0.0604 32 1 -0.2371 -2.3657 3.1471 33 1 -0.0762 -1.5416 1.5808 34 1 -2.4705 -1.7057 2.4484 35 1 -1.9271 -0.0399 2.1075 36 1 -1.3086 0.4167 6.6859 37 1 -1.4412 2.1155 6.1209 38 1 -3.6570 0.4756 6.5745 39 1 -3.6590 1.8340 5.4142 40 1 -6.5810 1.3053 5.7267 41 1 1.0243 0.9269 4.7882 42 1 0.4020 -0.6579 5.3315 43 1 1.8699 -2.7826 2.1386 44 1 1.7545 -2.7421 0.2984 45 1 3.9072 -1.4036 0.1924 46 1 4.0232 -1.4437 2.0326 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036822173.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:53:29 Heat of formation + Delta-G solvation = -69.310811 kcal Electronic energy + Delta-G solvation = -30466.143265 eV Core-core repulsion = 26221.480995 eV Total energy + Delta-G solvation = -4244.662271 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 328.170 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -49.18578 -47.16091 -40.75191 -38.62829 -36.88427 -35.47713 -32.77053 -31.89049 -31.31941 -29.71733 -28.20931 -25.83450 -24.68904 -23.81490 -23.07512 -22.25811 -21.96193 -20.12052 -19.66028 -19.07401 -17.88451 -17.50943 -16.65715 -16.43912 -16.16704 -15.78407 -15.25810 -14.87308 -14.61342 -14.36048 -14.03373 -13.98622 -13.82364 -13.53849 -13.48838 -13.19564 -12.90217 -12.82267 -12.69132 -12.57823 -12.10774 -11.93369 -11.91652 -11.72465 -11.52193 -11.43025 -11.00467 -10.85800 -10.83782 -10.75141 -10.63516 -10.22736 -10.13750 -9.95926 -9.75779 -9.67028 -9.51745 -8.66739 -8.62550 -6.89072 -5.76089 -3.09719 2.33107 2.74695 3.06919 3.36198 3.40632 3.42467 3.45963 3.84169 4.03366 4.19604 4.23990 4.44549 4.58477 4.67521 4.91019 4.95550 5.10997 5.18170 5.20109 5.24888 5.29666 5.41420 5.46671 5.47571 5.51825 5.56300 5.67301 5.67688 5.75012 5.82226 5.95468 6.06420 6.10849 6.16142 6.27758 6.41405 6.54708 6.57129 6.75193 6.99277 7.32876 7.50035 7.56811 7.76266 8.06221 8.19535 9.14272 9.78082 10.45946 11.36248 Molecular weight = 328.17amu Principal moments of inertia in cm(-1) A = 0.017629 B = 0.003803 C = 0.003430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1587.954281 B = 7361.269496 C = 8161.220816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.337 3.663 3 F -0.188 7.188 4 F -0.195 7.195 5 C -0.217 4.217 6 C 0.554 3.446 7 O -0.526 6.526 8 N -0.599 5.599 9 C 0.098 3.902 10 C -0.132 4.132 11 C 0.168 3.832 12 H 0.020 0.980 13 C -0.125 4.125 14 H 0.080 0.920 15 C -0.136 4.136 16 C 0.177 3.823 17 N -0.594 5.594 18 C -0.228 4.228 19 H 0.078 0.922 20 C -0.006 4.006 21 N -0.920 5.920 22 Si 0.909 3.091 23 H -0.285 1.285 24 H -0.290 1.290 25 H -0.285 1.285 26 C 0.126 3.874 27 C -0.146 4.146 28 C -0.130 4.130 29 H 0.097 0.903 30 H 0.088 0.912 31 H 0.097 0.903 32 H 0.067 0.933 33 H 0.088 0.912 34 H 0.079 0.921 35 H 0.069 0.931 36 H 0.058 0.942 37 H 0.061 0.939 38 H 0.038 0.962 39 H 0.055 0.945 40 H 0.253 0.747 41 H 0.090 0.910 42 H 0.071 0.929 43 H 0.113 0.887 44 H 0.114 0.886 45 H 0.112 0.888 46 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.080 -6.330 -8.008 18.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.260 4.260 2 C 0.300 3.700 3 F -0.169 7.169 4 F -0.176 7.176 5 C -0.221 4.221 6 C 0.340 3.660 7 O -0.402 6.402 8 N -0.331 5.331 9 C -0.025 4.025 10 C -0.171 4.171 11 C 0.060 3.940 12 H 0.037 0.963 13 C -0.145 4.145 14 H 0.098 0.902 15 C -0.175 4.175 16 C 0.053 3.947 17 N -0.318 5.318 18 C -0.357 4.357 19 H 0.095 0.905 20 C -0.203 4.203 21 N -0.567 5.567 22 Si 0.740 3.260 23 H -0.212 1.212 24 H -0.216 1.216 25 H -0.212 1.212 26 C 0.005 3.995 27 C -0.183 4.183 28 C -0.167 4.167 29 H 0.116 0.884 30 H 0.107 0.893 31 H 0.115 0.885 32 H 0.085 0.915 33 H 0.106 0.894 34 H 0.097 0.903 35 H 0.087 0.913 36 H 0.077 0.923 37 H 0.080 0.920 38 H 0.057 0.943 39 H 0.073 0.927 40 H 0.063 0.937 41 H 0.109 0.891 42 H 0.089 0.911 43 H 0.131 0.869 44 H 0.132 0.868 45 H 0.130 0.870 46 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 15.199 -5.803 -7.734 18.014 hybrid contribution -0.955 -0.155 -0.529 1.102 sum 14.244 -5.958 -8.263 17.512 Atomic orbital electron populations 1.23076 0.90587 1.05846 1.06475 1.19997 0.93607 0.75373 0.81037 1.93070 1.90517 1.36662 1.96628 1.93000 1.90677 1.81054 1.52838 1.22349 1.07693 0.97333 0.94740 1.18957 0.81134 0.82048 0.83895 1.90704 1.50515 1.30517 1.68433 1.48260 1.22012 1.44232 1.18604 1.22172 0.90064 0.91416 0.98871 1.21964 0.93461 1.02028 0.99667 1.20618 0.86982 0.93707 0.92727 0.96303 1.22638 0.93144 0.99501 0.99217 0.90154 1.22714 0.99476 1.00168 0.95102 1.21535 0.88169 0.94348 0.90677 1.44185 0.99870 1.49916 1.37868 1.18924 0.82775 1.20943 1.13015 0.90451 1.24788 0.97650 0.99290 0.98532 1.69928 1.25261 1.33075 1.28484 0.86243 0.83326 0.77865 0.78574 1.21188 1.21611 1.21202 1.21677 0.97403 0.98498 0.81955 1.23293 1.00806 0.89003 1.05222 1.23110 0.89581 0.98981 1.05025 0.88415 0.89301 0.88468 0.91480 0.89431 0.90293 0.91274 0.92319 0.92008 0.94334 0.92694 0.93666 0.89116 0.91053 0.86881 0.86787 0.86989 0.87279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.10 7.93 37.15 0.29 -1.81 16 2 C 0.34 4.00 2.08 -26.73 -0.06 3.95 16 3 F -0.19 -2.80 16.89 2.25 0.04 -2.76 16 4 F -0.19 -2.19 15.64 2.25 0.04 -2.16 16 5 C -0.22 -2.47 1.06 -155.66 -0.17 -2.63 16 6 C 0.55 7.93 6.03 -10.98 -0.07 7.86 16 7 O -0.53 -9.44 16.46 5.56 0.09 -9.34 16 8 N -0.60 -8.02 2.89 -172.49 -0.50 -8.52 16 9 C 0.10 1.14 4.00 -3.49 -0.01 1.12 16 10 C -0.13 -2.00 5.36 -26.98 -0.14 -2.15 16 11 C 0.17 3.13 2.57 -67.98 -0.17 2.95 16 12 H 0.02 0.37 7.92 -51.93 -0.41 -0.04 16 13 C -0.12 -2.11 2.86 -89.37 -0.26 -2.36 16 14 H 0.08 1.49 8.12 -51.93 -0.42 1.07 16 15 C -0.14 -2.42 6.54 -25.14 -0.16 -2.59 16 16 C 0.18 4.12 5.45 -1.92 -0.01 4.11 16 17 N -0.59 -14.14 3.35 -163.10 -0.55 -14.69 16 18 C -0.23 -5.96 9.88 -15.06 -0.15 -6.11 16 19 H 0.08 1.92 7.21 -52.48 -0.38 1.54 16 20 C -0.01 -0.16 5.49 -17.43 -0.10 -0.26 16 21 N -0.92 -26.28 10.44 55.49 0.58 -25.70 16 22 Si 0.91 21.34 29.55 -169.99 -5.02 16.31 16 23 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 24 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 25 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 26 C 0.13 1.82 5.97 -3.77 -0.02 1.80 16 27 C -0.15 -1.17 7.66 -26.69 -0.20 -1.38 16 28 C -0.13 -1.22 9.66 -26.69 -0.26 -1.48 16 29 H 0.10 1.17 5.19 -51.93 -0.27 0.90 16 30 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.10 0.80 6.78 -51.93 -0.35 0.44 16 32 H 0.07 0.70 8.12 -51.93 -0.42 0.28 16 33 H 0.09 0.84 2.51 -51.93 -0.13 0.71 16 34 H 0.08 1.20 7.62 -51.93 -0.40 0.81 16 35 H 0.07 1.10 6.91 -51.93 -0.36 0.74 16 36 H 0.06 0.96 8.12 -51.93 -0.42 0.54 16 37 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 38 H 0.04 0.99 7.77 -51.93 -0.40 0.58 16 39 H 0.05 1.43 7.21 -51.93 -0.37 1.06 16 40 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 41 H 0.09 1.38 6.98 -51.93 -0.36 1.01 16 42 H 0.07 0.95 8.08 -51.93 -0.42 0.53 16 43 H 0.11 0.83 7.59 -51.93 -0.39 0.43 16 44 H 0.11 0.74 7.90 -51.93 -0.41 0.33 16 45 H 0.11 0.96 7.66 -51.93 -0.40 0.56 16 46 H 0.11 1.02 8.14 -51.93 -0.42 0.59 16 LS Contribution 353.51 15.07 5.33 5.33 Total: -1.00 -31.34 353.51 -8.21 -39.55 By element: Atomic # 1 Polarization: 7.68 SS G_CDS: -6.73 Total: 0.95 kcal Atomic # 6 Polarization: 2.51 SS G_CDS: -1.49 Total: 1.03 kcal Atomic # 7 Polarization: -48.44 SS G_CDS: -0.47 Total: -48.90 kcal Atomic # 8 Polarization: -9.44 SS G_CDS: 0.09 Total: -9.34 kcal Atomic # 9 Polarization: -4.99 SS G_CDS: 0.07 Total: -4.92 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -31.34 -8.21 -39.55 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036822173.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.765 kcal (2) G-P(sol) polarization free energy of solvation -31.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.546 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds