Wall clock time and date at job start Tue Mar 31 2020 14:53:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 F 1.39902 * 109.47413 * 2 1 4 4 F 1.39905 * 109.47408 * 240.00020 * 2 1 3 5 5 C 1.53004 * 109.47517 * 120.00039 * 2 1 3 6 6 C 1.50696 * 115.54949 * 295.85009 * 5 2 1 7 7 O 1.21279 * 120.00456 * 273.67741 * 6 5 2 8 8 N 1.34787 * 119.99887 * 93.67484 * 6 5 2 9 9 C 1.46593 * 119.68299 * 354.97232 * 8 6 5 10 10 C 1.53961 * 110.58152 * 227.81322 * 9 8 6 11 11 C 1.51524 * 107.34367 * 308.95269 * 10 9 8 12 12 H 1.08992 * 108.81315 * 306.55342 * 11 10 9 13 13 C 1.55363 * 107.78239 * 64.85780 * 11 10 9 14 14 H 1.09000 * 111.50907 * 51.16342 * 13 11 10 15 15 C 1.53740 * 100.22251 * 169.05705 * 13 11 10 16 16 C 1.55284 * 101.84306 * 320.91106 * 15 13 11 17 17 N 1.45466 * 117.33723 * 181.88958 * 11 10 9 18 18 C 1.36935 * 126.40596 * 30.67909 * 17 11 10 19 19 H 1.08005 * 119.99768 * 359.97438 * 18 17 11 20 20 C 1.38813 * 120.00475 * 179.97438 * 18 17 11 21 21 N 1.31618 * 119.99491 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 120.00224 * 179.97438 * 20 18 17 23 23 H 1.48491 * 109.46978 * 59.99968 * 22 20 18 24 24 H 1.48503 * 109.46879 * 180.02562 * 22 20 18 25 25 H 1.48497 * 109.46993 * 299.99803 * 22 20 18 26 26 C 1.47713 * 119.68125 * 174.97426 * 8 6 5 27 27 C 1.52997 * 117.49334 * 81.51574 * 5 2 1 28 28 C 1.52999 * 117.50194 * 150.17616 * 5 2 1 29 29 H 1.09003 * 109.47322 * 296.62717 * 1 2 3 30 30 H 1.08997 * 109.47346 * 56.62932 * 1 2 3 31 31 H 1.09006 * 109.47337 * 176.62907 * 1 2 3 32 32 H 1.08994 * 109.25097 * 107.53077 * 9 8 6 33 33 H 1.09000 * 109.25524 * 348.09449 * 9 8 6 34 34 H 1.09003 * 109.88178 * 189.49237 * 10 9 8 35 35 H 1.08999 * 109.88059 * 68.40858 * 10 9 8 36 36 H 1.09002 * 110.95079 * 79.05304 * 15 13 11 37 37 H 1.09000 * 110.95377 * 202.76712 * 15 13 11 38 38 H 1.08998 * 109.92005 * 141.82603 * 16 15 13 39 39 H 1.09004 * 109.92050 * 263.12798 * 16 15 13 40 40 H 0.97006 * 119.99548 * 179.97438 * 21 20 18 41 41 H 1.08999 * 110.07543 * 8.73326 * 26 8 6 42 42 H 1.09004 * 110.06845 * 247.15788 * 26 8 6 43 43 H 1.09004 * 117.49963 * 215.00694 * 27 5 2 44 44 H 1.08999 * 117.50737 * 0.02562 * 27 5 2 45 45 H 1.09003 * 117.49501 * 359.97438 * 28 5 2 46 46 H 1.08993 * 117.49637 * 145.00159 * 28 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 9 1.9963 1.3190 0.0000 4 9 1.9963 -0.6595 -1.1423 5 6 2.0400 -0.7213 1.2492 6 6 1.6978 -0.0668 2.5628 7 8 2.4171 0.7987 3.0148 8 7 0.5922 -0.4434 3.2355 9 6 -0.3307 -1.4095 2.6323 10 6 -1.7837 -0.9127 2.7444 11 6 -2.0226 -0.5383 4.1931 12 1 -1.7530 -1.3851 4.8241 13 6 -1.0993 0.6648 4.5307 14 1 -1.2049 1.4669 3.8002 15 6 -1.6733 1.0743 5.8968 16 6 -3.1977 0.8809 5.6729 17 7 -3.3541 -0.0761 4.5528 18 6 -4.5320 -0.4551 3.9662 19 1 -4.5259 -1.1645 3.1518 20 6 -5.7338 0.0723 4.4182 21 7 -5.7412 0.9364 5.4110 22 14 -7.3405 -0.4443 3.6176 23 1 -7.5159 -1.9117 3.7617 24 1 -8.4706 0.2572 4.2780 25 1 -7.3121 -0.0883 2.1762 26 6 0.3222 0.1213 4.5735 27 6 2.0867 -2.2501 1.2126 28 6 3.3856 -1.4425 1.1487 29 1 -0.3634 0.4606 0.9187 30 1 -0.3634 0.5652 -0.8582 31 1 -0.3634 -1.0259 -0.0604 32 1 -0.2371 -2.3657 3.1471 33 1 -0.0762 -1.5416 1.5808 34 1 -2.4705 -1.7057 2.4484 35 1 -1.9271 -0.0399 2.1075 36 1 -1.3086 0.4167 6.6859 37 1 -1.4412 2.1155 6.1209 38 1 -3.6570 0.4756 6.5745 39 1 -3.6590 1.8340 5.4142 40 1 -6.5810 1.3053 5.7267 41 1 1.0243 0.9269 4.7882 42 1 0.4020 -0.6579 5.3315 43 1 1.8699 -2.7826 2.1386 44 1 1.7545 -2.7421 0.2984 45 1 3.9072 -1.4036 0.1924 46 1 4.0232 -1.4437 2.0326 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036822173.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:53:28 Heat of formation + Delta-G solvation = -87.565541 kcal Electronic energy + Delta-G solvation = -30466.934850 eV Core-core repulsion = 26221.480995 eV Total energy + Delta-G solvation = -4245.453855 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 328.170 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -50.11649 -48.12059 -41.85964 -39.98853 -37.82216 -36.85551 -34.49813 -33.16394 -32.29591 -31.35768 -29.69776 -27.02124 -26.22995 -25.00597 -24.04454 -23.30319 -23.02064 -21.83766 -21.03894 -20.08782 -19.02309 -18.49460 -18.16241 -17.42955 -17.34666 -16.96654 -16.71770 -16.17319 -15.92938 -15.61820 -15.46824 -15.00861 -14.89283 -14.69107 -14.61842 -14.41552 -14.08639 -14.03839 -13.88626 -13.60045 -13.30474 -13.25630 -13.09293 -12.97163 -12.77397 -12.61587 -12.54208 -12.38441 -12.08616 -12.02305 -11.87194 -11.67173 -11.55839 -11.50242 -11.40278 -11.02649 -10.80214 -10.66955 -9.76348 -8.84675 -7.80338 -5.14600 1.27275 1.48591 1.51015 1.56936 1.75006 2.29083 2.53226 2.62088 2.99317 3.14405 3.31297 3.38963 3.47393 3.52641 3.78070 3.82705 3.86157 3.90843 4.01323 4.19248 4.23015 4.37760 4.39320 4.49282 4.54881 4.60571 4.63342 4.66655 4.70977 4.79589 4.81321 4.86351 4.91500 4.94903 5.04637 5.06514 5.09374 5.24572 5.45419 5.55712 5.56412 5.67962 5.78429 6.23129 6.26425 6.98270 7.11805 7.82885 8.51722 9.31523 Molecular weight = 328.17amu Principal moments of inertia in cm(-1) A = 0.017629 B = 0.003803 C = 0.003430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1587.954281 B = 7361.269496 C = 8161.220816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.333 3.667 3 F -0.212 7.212 4 F -0.189 7.189 5 C -0.240 4.240 6 C 0.555 3.445 7 O -0.570 6.570 8 N -0.596 5.596 9 C 0.105 3.895 10 C -0.126 4.126 11 C 0.158 3.842 12 H 0.027 0.973 13 C -0.111 4.111 14 H 0.059 0.941 15 C -0.122 4.122 16 C 0.182 3.818 17 N -0.614 5.614 18 C -0.227 4.227 19 H 0.092 0.908 20 C -0.070 4.070 21 N -0.955 5.955 22 Si 0.973 3.027 23 H -0.275 1.275 24 H -0.302 1.302 25 H -0.277 1.277 26 C 0.134 3.866 27 C -0.117 4.117 28 C -0.132 4.132 29 H 0.079 0.921 30 H 0.093 0.907 31 H 0.124 0.876 32 H 0.094 0.906 33 H 0.113 0.887 34 H 0.083 0.917 35 H 0.056 0.944 36 H 0.080 0.920 37 H 0.073 0.927 38 H 0.004 0.996 39 H 0.014 0.986 40 H 0.243 0.757 41 H 0.083 0.917 42 H 0.092 0.908 43 H 0.128 0.872 44 H 0.138 0.862 45 H 0.119 0.881 46 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.407 -9.163 -9.649 21.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.259 4.259 2 C 0.296 3.704 3 F -0.193 7.193 4 F -0.170 7.170 5 C -0.244 4.244 6 C 0.342 3.658 7 O -0.449 6.449 8 N -0.328 5.328 9 C -0.017 4.017 10 C -0.165 4.165 11 C 0.052 3.948 12 H 0.044 0.956 13 C -0.131 4.131 14 H 0.077 0.923 15 C -0.161 4.161 16 C 0.057 3.943 17 N -0.339 5.339 18 C -0.356 4.356 19 H 0.109 0.891 20 C -0.263 4.263 21 N -0.605 5.605 22 Si 0.802 3.198 23 H -0.201 1.201 24 H -0.229 1.229 25 H -0.203 1.203 26 C 0.012 3.988 27 C -0.154 4.154 28 C -0.169 4.169 29 H 0.098 0.902 30 H 0.112 0.888 31 H 0.142 0.858 32 H 0.112 0.888 33 H 0.131 0.869 34 H 0.102 0.898 35 H 0.075 0.925 36 H 0.098 0.902 37 H 0.092 0.908 38 H 0.022 0.978 39 H 0.033 0.967 40 H 0.052 0.948 41 H 0.102 0.898 42 H 0.110 0.890 43 H 0.146 0.854 44 H 0.156 0.844 45 H 0.138 0.862 46 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 16.552 -8.681 -9.410 20.926 hybrid contribution -1.321 0.733 -0.023 1.511 sum 15.231 -7.948 -9.434 19.600 Atomic orbital electron populations 1.23103 0.89538 1.07487 1.05776 1.20206 0.94339 0.74388 0.81444 1.93025 1.90883 1.38655 1.96768 1.93004 1.90716 1.80766 1.52550 1.22250 1.10049 0.99442 0.92669 1.19396 0.80576 0.81275 0.84532 1.90681 1.51985 1.32459 1.69749 1.48290 1.22139 1.44210 1.18120 1.22267 0.87138 0.91495 1.00797 1.21898 0.96129 1.01799 0.96705 1.20873 0.84569 0.94186 0.95215 0.95582 1.22462 0.94651 0.98265 0.97724 0.92258 1.22581 0.95386 1.01593 0.96520 1.21284 0.91436 0.92227 0.89351 1.44467 1.01443 1.49997 1.37970 1.19392 0.83691 1.20005 1.12535 0.89075 1.25608 1.00957 1.00120 0.99595 1.70167 1.25089 1.34877 1.30375 0.85231 0.79182 0.77667 0.77764 1.20109 1.22876 1.20293 1.21540 0.94954 0.99004 0.83341 1.23533 0.98512 0.86284 1.07063 1.23223 0.89585 0.98741 1.05395 0.90244 0.88765 0.85759 0.88811 0.86898 0.89849 0.92484 0.90156 0.90849 0.97760 0.96738 0.94760 0.89833 0.88988 0.85426 0.84388 0.86247 0.87524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.69 7.93 71.98 0.57 -3.12 16 2 C 0.33 7.19 2.08 30.59 0.06 7.25 16 3 F -0.21 -6.22 16.89 44.97 0.76 -5.46 16 4 F -0.19 -3.72 15.64 44.97 0.70 -3.02 16 5 C -0.24 -4.79 1.06 -52.93 -0.06 -4.85 16 6 C 0.55 14.83 6.03 87.65 0.53 15.36 16 7 O -0.57 -20.14 16.46 -3.03 -0.05 -20.19 16 8 N -0.60 -14.44 2.89 -818.03 -2.36 -16.80 16 9 C 0.10 2.03 4.00 86.69 0.35 2.38 16 10 C -0.13 -3.52 5.36 30.44 0.16 -3.36 16 11 C 0.16 5.67 2.57 45.51 0.12 5.79 16 12 H 0.03 0.94 7.92 -2.39 -0.02 0.92 16 13 C -0.11 -3.66 2.86 -9.98 -0.03 -3.69 16 14 H 0.06 2.22 8.12 -2.39 -0.02 2.20 16 15 C -0.12 -4.34 6.54 31.63 0.21 -4.13 16 16 C 0.18 8.81 5.45 86.85 0.47 9.28 16 17 N -0.61 -29.51 3.35 -669.93 -2.24 -31.76 16 18 C -0.23 -11.89 9.88 84.03 0.83 -11.06 16 19 H 0.09 4.39 7.21 -2.91 -0.02 4.37 16 20 C -0.07 -3.88 5.49 84.86 0.47 -3.41 16 21 N -0.96 -56.92 10.44 21.65 0.23 -56.70 16 22 Si 0.97 44.36 29.55 68.60 2.03 46.39 16 23 H -0.28 -11.96 7.11 99.48 0.71 -11.25 16 24 H -0.30 -14.23 7.11 99.48 0.71 -13.52 16 25 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 26 C 0.13 3.60 5.97 85.90 0.51 4.11 16 27 C -0.12 -1.33 7.66 30.62 0.23 -1.09 16 28 C -0.13 -2.09 9.66 30.62 0.30 -1.79 16 29 H 0.08 1.78 5.19 -2.39 -0.01 1.77 16 30 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 31 H 0.12 1.52 6.78 -2.38 -0.02 1.50 16 32 H 0.09 1.44 8.12 -2.39 -0.02 1.42 16 33 H 0.11 1.65 2.51 -2.39 -0.01 1.64 16 34 H 0.08 2.28 7.62 -2.39 -0.02 2.26 16 35 H 0.06 1.74 6.91 -2.39 -0.02 1.72 16 36 H 0.08 2.52 8.12 -2.39 -0.02 2.50 16 37 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 38 H 0.00 0.23 7.77 -2.39 -0.02 0.21 16 39 H 0.01 0.80 7.21 -2.38 -0.02 0.78 16 40 H 0.24 14.30 8.31 -92.70 -0.77 13.53 16 41 H 0.08 2.43 6.98 -2.39 -0.02 2.42 16 42 H 0.09 2.15 8.08 -2.38 -0.02 2.13 16 43 H 0.13 1.14 7.59 -2.38 -0.02 1.12 16 44 H 0.14 0.97 7.90 -2.39 -0.02 0.95 16 45 H 0.12 1.70 7.66 -2.39 -0.02 1.68 16 46 H 0.11 1.74 8.14 -2.39 -0.02 1.72 16 Total: -1.00 -71.98 353.51 4.78 -67.20 By element: Atomic # 1 Polarization: 11.66 SS G_CDS: 1.00 Total: 12.66 kcal Atomic # 6 Polarization: 2.94 SS G_CDS: 4.72 Total: 7.66 kcal Atomic # 7 Polarization: -100.87 SS G_CDS: -4.38 Total: -105.25 kcal Atomic # 8 Polarization: -20.14 SS G_CDS: -0.05 Total: -20.19 kcal Atomic # 9 Polarization: -9.94 SS G_CDS: 1.46 Total: -8.47 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 2.03 Total: 46.39 kcal Total: -71.98 4.78 -67.20 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036822173.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.363 kcal (2) G-P(sol) polarization free energy of solvation -71.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.203 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds