Wall clock time and date at job start Tue Mar 31 2020 14:53:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 F 1.39899 * 109.46999 * 2 1 4 4 F 1.39901 * 109.46820 * 239.99905 * 2 1 3 5 5 C 1.52997 * 109.47168 * 119.99866 * 2 1 3 6 6 C 1.50701 * 115.54931 * 304.28759 * 5 2 1 7 7 O 1.21284 * 119.99773 * 96.13133 * 6 5 2 8 8 N 1.34775 * 120.00441 * 276.12591 * 6 5 2 9 9 C 1.46597 * 119.68031 * 354.98705 * 8 6 5 10 10 C 1.53958 * 110.57351 * 132.20028 * 9 8 6 11 11 C 1.51512 * 107.34896 * 51.05063 * 10 9 8 12 12 H 1.08998 * 108.79974 * 53.43942 * 11 10 9 13 13 C 1.55363 * 107.79589 * 295.14867 * 11 10 9 14 14 H 1.09005 * 111.50508 * 308.81003 * 13 11 10 15 15 C 1.53738 * 100.22002 * 190.91197 * 13 11 10 16 16 C 1.55292 * 101.84262 * 39.09302 * 15 13 11 17 17 N 1.45460 * 117.35288 * 178.08986 * 11 10 9 18 18 C 1.36935 * 126.40623 * 329.40490 * 17 11 10 19 19 H 1.08004 * 120.00150 * 359.97438 * 18 17 11 20 20 C 1.38810 * 120.00265 * 179.97438 * 18 17 11 21 21 N 1.31622 * 119.99824 * 359.97438 * 20 18 17 22 22 Si 1.86796 * 120.00424 * 180.02562 * 20 18 17 23 23 H 1.48505 * 109.47066 * 359.97438 * 22 20 18 24 24 H 1.48506 * 109.47597 * 119.99903 * 22 20 18 25 25 H 1.48494 * 109.47393 * 240.00247 * 22 20 18 26 26 C 1.47714 * 119.68674 * 175.01343 * 8 6 5 27 27 C 1.53000 * 117.51756 * 89.99443 * 5 2 1 28 28 C 1.53001 * 60.00221 * 107.47765 * 27 5 2 29 29 H 1.08999 * 109.46377 * 295.90329 * 1 2 3 30 30 H 1.08996 * 109.47377 * 55.89990 * 1 2 3 31 31 H 1.08999 * 109.47120 * 175.90782 * 1 2 3 32 32 H 1.09001 * 109.25549 * 11.92086 * 9 8 6 33 33 H 1.08995 * 109.22979 * 252.46381 * 9 8 6 34 34 H 1.09008 * 109.88032 * 291.59340 * 10 9 8 35 35 H 1.09004 * 109.94254 * 170.55114 * 10 9 8 36 36 H 1.09001 * 110.95619 * 157.22330 * 15 13 11 37 37 H 1.08993 * 110.95788 * 280.95573 * 15 13 11 38 38 H 1.09005 * 109.91588 * 218.17118 * 16 15 13 39 39 H 1.08995 * 110.08787 * 96.96197 * 16 15 13 40 40 H 0.97000 * 120.00148 * 180.02562 * 21 20 18 41 41 H 1.08996 * 110.07121 * 112.82190 * 26 8 6 42 42 H 1.08999 * 110.06714 * 351.25096 * 26 8 6 43 43 H 1.09001 * 117.49457 * 214.96756 * 27 5 2 44 44 H 1.08998 * 117.49710 * 359.97438 * 27 5 2 45 45 H 1.08995 * 117.50081 * 252.51204 * 28 27 5 46 46 H 1.09004 * 117.51903 * 107.47866 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 9 1.9964 1.3190 0.0000 4 9 1.9963 -0.6595 -1.1423 5 6 2.0401 -0.7212 1.2492 6 6 1.5346 -0.1824 2.5627 7 8 0.5771 -0.6967 3.1009 8 7 2.1465 0.8709 3.1394 9 6 3.3680 1.4177 2.5410 10 6 3.2768 2.9505 2.4300 11 6 2.8766 3.4792 3.7923 12 1 3.5704 3.0904 4.5377 13 6 1.4471 2.9562 4.1034 14 1 0.7588 3.1629 3.2837 15 6 1.1107 3.8023 5.3421 16 6 1.7258 5.1775 4.9655 17 7 2.7680 4.9218 3.9439 18 6 3.4931 5.8668 3.2684 19 1 4.2312 5.5630 2.5409 20 6 3.2793 7.2154 3.5186 21 7 2.3794 7.5857 4.4048 22 14 4.2678 8.5046 2.5966 23 1 5.2070 7.8335 1.6623 24 1 3.3459 9.3798 1.8288 25 1 5.0370 9.3254 3.5660 26 6 1.5803 1.4630 4.3685 27 6 2.2756 -2.2296 1.1480 28 6 3.4671 -1.2720 1.2138 29 1 -0.3632 0.4490 0.9244 30 1 -0.3634 0.5761 -0.8509 31 1 -0.3633 -1.0250 -0.0733 32 1 3.5024 0.9926 1.5463 33 1 4.2224 1.1526 3.1636 34 1 2.5244 3.2245 1.6904 35 1 4.2451 3.3608 2.1429 36 1 0.0322 3.8820 5.4786 37 1 1.5858 3.3938 6.2340 38 1 2.1740 5.6375 5.8462 39 1 0.9566 5.8320 4.5556 40 1 2.2297 8.5280 4.5794 41 1 2.2512 1.2910 5.2100 42 1 0.6011 1.0310 4.5750 43 1 2.0649 -2.8322 2.0315 44 1 2.0668 -2.7085 0.1914 45 1 4.0423 -1.1209 0.3004 46 1 4.0404 -1.2443 2.1405 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036822174.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:53:32 Heat of formation + Delta-G solvation = -73.423934 kcal Electronic energy + Delta-G solvation = -30555.775400 eV Core-core repulsion = 26310.934771 eV Total energy + Delta-G solvation = -4244.840629 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 328.170 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -49.20668 -47.17516 -40.61858 -38.64461 -36.77194 -35.41560 -32.66673 -31.59791 -31.50309 -29.68819 -28.21873 -25.61710 -24.76169 -23.74635 -23.02760 -22.23913 -21.93291 -20.08038 -19.61747 -19.01355 -17.78527 -17.56351 -16.62704 -16.43061 -16.10696 -15.76277 -15.16757 -14.83209 -14.60983 -14.38493 -14.05521 -13.83457 -13.81760 -13.46454 -13.31113 -13.05527 -13.03152 -12.72980 -12.53687 -12.40765 -12.37049 -11.94338 -11.87892 -11.69272 -11.48803 -11.44995 -10.95665 -10.85842 -10.81867 -10.70374 -10.55895 -10.15909 -10.07529 -9.91542 -9.74108 -9.62195 -9.46163 -8.62782 -8.58333 -6.83769 -5.71732 -3.04752 2.30652 2.78885 3.12376 3.39503 3.45116 3.45679 3.47404 3.86943 4.02536 4.21038 4.25698 4.49234 4.63934 4.70618 5.00483 5.06897 5.16954 5.22987 5.27034 5.31654 5.33775 5.45799 5.48317 5.52438 5.57467 5.62273 5.68733 5.70991 5.79891 5.87310 6.00018 6.13737 6.19942 6.24757 6.33069 6.46027 6.60265 6.66745 6.81227 7.07207 7.37191 7.55305 7.60957 7.81118 8.05290 8.24212 9.19423 9.83021 10.50789 11.40886 Molecular weight = 328.17amu Principal moments of inertia in cm(-1) A = 0.017276 B = 0.003955 C = 0.003541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1620.317968 B = 7078.140640 C = 7904.385002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.334 3.666 3 F -0.184 7.184 4 F -0.195 7.195 5 C -0.217 4.217 6 C 0.555 3.445 7 O -0.535 6.535 8 N -0.593 5.593 9 C 0.106 3.894 10 C -0.127 4.127 11 C 0.168 3.832 12 H 0.018 0.982 13 C -0.125 4.125 14 H 0.080 0.920 15 C -0.135 4.135 16 C 0.176 3.824 17 N -0.594 5.594 18 C -0.224 4.224 19 H 0.079 0.921 20 C -0.008 4.008 21 N -0.921 5.921 22 Si 0.909 3.091 23 H -0.280 1.280 24 H -0.291 1.291 25 H -0.291 1.291 26 C 0.127 3.873 27 C -0.124 4.124 28 C -0.151 4.151 29 H 0.091 0.909 30 H 0.084 0.916 31 H 0.091 0.909 32 H 0.086 0.914 33 H 0.064 0.936 34 H 0.071 0.929 35 H 0.075 0.925 36 H 0.061 0.939 37 H 0.058 0.942 38 H 0.038 0.962 39 H 0.055 0.945 40 H 0.251 0.749 41 H 0.071 0.929 42 H 0.089 0.911 43 H 0.111 0.889 44 H 0.112 0.888 45 H 0.113 0.887 46 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.818 -18.960 -6.004 19.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C 0.297 3.703 3 F -0.165 7.165 4 F -0.176 7.176 5 C -0.221 4.221 6 C 0.341 3.659 7 O -0.413 6.413 8 N -0.324 5.324 9 C -0.017 4.017 10 C -0.166 4.166 11 C 0.059 3.941 12 H 0.036 0.964 13 C -0.145 4.145 14 H 0.098 0.902 15 C -0.174 4.174 16 C 0.052 3.948 17 N -0.318 5.318 18 C -0.352 4.352 19 H 0.097 0.903 20 C -0.204 4.204 21 N -0.569 5.569 22 Si 0.740 3.260 23 H -0.205 1.205 24 H -0.218 1.218 25 H -0.218 1.218 26 C 0.005 3.995 27 C -0.161 4.161 28 C -0.188 4.188 29 H 0.110 0.890 30 H 0.103 0.897 31 H 0.110 0.890 32 H 0.105 0.895 33 H 0.082 0.918 34 H 0.090 0.910 35 H 0.094 0.906 36 H 0.079 0.921 37 H 0.077 0.923 38 H 0.056 0.944 39 H 0.073 0.927 40 H 0.062 0.938 41 H 0.089 0.911 42 H 0.108 0.892 43 H 0.129 0.871 44 H 0.130 0.870 45 H 0.131 0.869 46 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -1.251 -18.923 -5.736 19.813 hybrid contribution 0.687 1.030 -0.622 1.385 sum -0.564 -17.893 -6.357 18.997 Atomic orbital electron populations 1.22715 0.90595 1.05672 1.05695 1.19978 0.93917 0.75318 0.81041 1.93083 1.90342 1.36533 1.96548 1.92999 1.90673 1.81062 1.52823 1.22351 1.04599 1.00409 0.94716 1.18940 0.82749 0.80145 0.84098 1.90690 1.27558 1.58823 1.64200 1.48258 1.26982 1.30338 1.26856 1.21985 0.85323 0.95757 0.98616 1.21864 1.02941 0.92139 0.99700 1.20634 0.92975 0.86555 0.93894 0.96429 1.22635 0.99996 0.92306 0.99559 0.90162 1.22710 1.00134 0.98532 0.96027 1.21538 0.91022 0.90329 0.91896 1.44205 1.43379 0.98843 1.45422 1.19045 1.14121 0.85709 1.16337 0.90322 1.24782 0.99299 0.96957 0.99387 1.69949 1.35836 1.14965 1.36168 0.86086 0.79157 0.81863 0.78920 1.20514 1.21812 1.21816 1.21673 0.99522 0.93212 0.85046 1.23091 0.99646 0.88388 1.05015 1.23253 0.89146 1.01199 1.05161 0.89045 0.89696 0.89008 0.89535 0.91795 0.91050 0.90620 0.92057 0.92327 0.94382 0.92653 0.93839 0.91077 0.89237 0.87066 0.86957 0.86902 0.87147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.00 9.22 37.16 0.34 -1.66 16 2 C 0.33 3.92 2.09 -26.73 -0.06 3.86 16 3 F -0.18 -2.58 14.72 2.25 0.03 -2.54 16 4 F -0.19 -2.20 15.64 2.25 0.04 -2.16 16 5 C -0.22 -2.44 0.82 -155.66 -0.13 -2.56 16 6 C 0.56 7.77 5.74 -10.99 -0.06 7.70 16 7 O -0.54 -8.78 16.27 5.55 0.09 -8.69 16 8 N -0.59 -8.45 3.00 -172.50 -0.52 -8.96 16 9 C 0.11 1.44 5.03 -3.49 -0.02 1.43 16 10 C -0.13 -2.19 5.48 -26.98 -0.15 -2.34 16 11 C 0.17 3.32 2.57 -67.99 -0.17 3.14 16 12 H 0.02 0.37 7.92 -51.93 -0.41 -0.04 16 13 C -0.12 -2.19 2.86 -89.37 -0.26 -2.44 16 14 H 0.08 1.54 8.12 -51.93 -0.42 1.11 16 15 C -0.14 -2.47 6.54 -25.13 -0.16 -2.63 16 16 C 0.18 4.21 5.46 -1.91 -0.01 4.20 16 17 N -0.59 -14.71 3.35 -163.10 -0.55 -15.25 16 18 C -0.22 -6.07 9.88 -15.06 -0.15 -6.22 16 19 H 0.08 2.06 7.21 -52.48 -0.38 1.68 16 20 C -0.01 -0.23 5.49 -17.43 -0.10 -0.32 16 21 N -0.92 -26.84 10.43 55.49 0.58 -26.27 16 22 Si 0.91 21.95 29.55 -169.99 -5.02 16.93 16 23 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 24 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 25 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 26 C 0.13 1.90 5.94 -3.77 -0.02 1.87 16 27 C -0.12 -1.09 9.61 -26.73 -0.26 -1.34 16 28 C -0.15 -1.33 7.70 -26.73 -0.21 -1.54 16 29 H 0.09 1.11 7.18 -51.93 -0.37 0.73 16 30 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.09 1.07 3.74 -51.93 -0.19 0.88 16 33 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.07 1.34 7.83 -51.92 -0.41 0.93 16 35 H 0.08 1.33 7.62 -51.93 -0.40 0.93 16 36 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 37 H 0.06 0.98 8.11 -51.93 -0.42 0.56 16 38 H 0.04 0.99 7.77 -51.93 -0.40 0.59 16 39 H 0.06 1.47 7.20 -51.93 -0.37 1.10 16 40 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 41 H 0.07 1.00 8.08 -51.93 -0.42 0.58 16 42 H 0.09 1.35 7.03 -51.93 -0.37 0.98 16 43 H 0.11 0.97 8.14 -51.93 -0.42 0.54 16 44 H 0.11 0.83 7.66 -51.93 -0.40 0.44 16 45 H 0.11 0.90 7.91 -51.93 -0.41 0.49 16 46 H 0.11 0.91 7.95 -51.93 -0.41 0.50 16 LS Contribution 359.07 15.07 5.41 5.41 Total: -1.00 -30.99 359.07 -8.38 -39.37 By element: Atomic # 1 Polarization: 8.05 SS G_CDS: -7.03 Total: 1.02 kcal Atomic # 6 Polarization: 2.55 SS G_CDS: -1.40 Total: 1.15 kcal Atomic # 7 Polarization: -50.00 SS G_CDS: -0.48 Total: -50.48 kcal Atomic # 8 Polarization: -8.78 SS G_CDS: 0.09 Total: -8.69 kcal Atomic # 9 Polarization: -4.77 SS G_CDS: 0.07 Total: -4.71 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -30.99 -8.38 -39.37 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036822174.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.056 kcal (2) G-P(sol) polarization free energy of solvation -30.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.368 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds