Wall clock time and date at job start Tue Mar 31 2020 14:53:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 F 1.39899 * 109.46999 * 2 1 4 4 F 1.39901 * 109.46820 * 239.99905 * 2 1 3 5 5 C 1.52997 * 109.47168 * 119.99866 * 2 1 3 6 6 C 1.50701 * 115.54931 * 304.28759 * 5 2 1 7 7 O 1.21284 * 119.99773 * 96.13133 * 6 5 2 8 8 N 1.34775 * 120.00441 * 276.12591 * 6 5 2 9 9 C 1.46597 * 119.68031 * 354.98705 * 8 6 5 10 10 C 1.53958 * 110.57351 * 132.20028 * 9 8 6 11 11 C 1.51512 * 107.34896 * 51.05063 * 10 9 8 12 12 H 1.08998 * 108.79974 * 53.43942 * 11 10 9 13 13 C 1.55363 * 107.79589 * 295.14867 * 11 10 9 14 14 H 1.09005 * 111.50508 * 308.81003 * 13 11 10 15 15 C 1.53738 * 100.22002 * 190.91197 * 13 11 10 16 16 C 1.55292 * 101.84262 * 39.09302 * 15 13 11 17 17 N 1.45460 * 117.35288 * 178.08986 * 11 10 9 18 18 C 1.36935 * 126.40623 * 329.40490 * 17 11 10 19 19 H 1.08004 * 120.00150 * 359.97438 * 18 17 11 20 20 C 1.38810 * 120.00265 * 179.97438 * 18 17 11 21 21 N 1.31622 * 119.99824 * 359.97438 * 20 18 17 22 22 Si 1.86796 * 120.00424 * 180.02562 * 20 18 17 23 23 H 1.48505 * 109.47066 * 359.97438 * 22 20 18 24 24 H 1.48506 * 109.47597 * 119.99903 * 22 20 18 25 25 H 1.48494 * 109.47393 * 240.00247 * 22 20 18 26 26 C 1.47714 * 119.68674 * 175.01343 * 8 6 5 27 27 C 1.53000 * 117.51756 * 89.99443 * 5 2 1 28 28 C 1.53001 * 60.00221 * 107.47765 * 27 5 2 29 29 H 1.08999 * 109.46377 * 295.90329 * 1 2 3 30 30 H 1.08996 * 109.47377 * 55.89990 * 1 2 3 31 31 H 1.08999 * 109.47120 * 175.90782 * 1 2 3 32 32 H 1.09001 * 109.25549 * 11.92086 * 9 8 6 33 33 H 1.08995 * 109.22979 * 252.46381 * 9 8 6 34 34 H 1.09008 * 109.88032 * 291.59340 * 10 9 8 35 35 H 1.09004 * 109.94254 * 170.55114 * 10 9 8 36 36 H 1.09001 * 110.95619 * 157.22330 * 15 13 11 37 37 H 1.08993 * 110.95788 * 280.95573 * 15 13 11 38 38 H 1.09005 * 109.91588 * 218.17118 * 16 15 13 39 39 H 1.08995 * 110.08787 * 96.96197 * 16 15 13 40 40 H 0.97000 * 120.00148 * 180.02562 * 21 20 18 41 41 H 1.08996 * 110.07121 * 112.82190 * 26 8 6 42 42 H 1.08999 * 110.06714 * 351.25096 * 26 8 6 43 43 H 1.09001 * 117.49457 * 214.96756 * 27 5 2 44 44 H 1.08998 * 117.49710 * 359.97438 * 27 5 2 45 45 H 1.08995 * 117.50081 * 252.51204 * 28 27 5 46 46 H 1.09004 * 117.51903 * 107.47866 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 9 1.9964 1.3190 0.0000 4 9 1.9963 -0.6595 -1.1423 5 6 2.0401 -0.7212 1.2492 6 6 1.5346 -0.1824 2.5627 7 8 0.5771 -0.6967 3.1009 8 7 2.1465 0.8709 3.1394 9 6 3.3680 1.4177 2.5410 10 6 3.2768 2.9505 2.4300 11 6 2.8766 3.4792 3.7923 12 1 3.5704 3.0904 4.5377 13 6 1.4471 2.9562 4.1034 14 1 0.7588 3.1629 3.2837 15 6 1.1107 3.8023 5.3421 16 6 1.7258 5.1775 4.9655 17 7 2.7680 4.9218 3.9439 18 6 3.4931 5.8668 3.2684 19 1 4.2312 5.5630 2.5409 20 6 3.2793 7.2154 3.5186 21 7 2.3794 7.5857 4.4048 22 14 4.2678 8.5046 2.5966 23 1 5.2070 7.8335 1.6623 24 1 3.3459 9.3798 1.8288 25 1 5.0370 9.3254 3.5660 26 6 1.5803 1.4630 4.3685 27 6 2.2756 -2.2296 1.1480 28 6 3.4671 -1.2720 1.2138 29 1 -0.3632 0.4490 0.9244 30 1 -0.3634 0.5761 -0.8509 31 1 -0.3633 -1.0250 -0.0733 32 1 3.5024 0.9926 1.5463 33 1 4.2224 1.1526 3.1636 34 1 2.5244 3.2245 1.6904 35 1 4.2451 3.3608 2.1429 36 1 0.0322 3.8820 5.4786 37 1 1.5858 3.3938 6.2340 38 1 2.1740 5.6375 5.8462 39 1 0.9566 5.8320 4.5556 40 1 2.2297 8.5280 4.5794 41 1 2.2512 1.2910 5.2100 42 1 0.6011 1.0310 4.5750 43 1 2.0649 -2.8322 2.0315 44 1 2.0668 -2.7085 0.1914 45 1 4.0423 -1.1209 0.3004 46 1 4.0404 -1.2443 2.1405 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036822174.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:53:31 Heat of formation + Delta-G solvation = -90.861626 kcal Electronic energy + Delta-G solvation = -30556.531555 eV Core-core repulsion = 26310.934771 eV Total energy + Delta-G solvation = -4245.596784 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 328.170 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -50.13109 -48.11609 -41.75929 -40.04165 -37.69366 -36.85360 -34.50283 -33.05705 -32.35235 -31.38162 -29.78540 -26.89331 -26.30082 -24.99018 -24.03203 -23.33106 -23.05739 -21.85531 -21.05823 -20.06318 -18.99677 -18.49513 -18.18078 -17.49416 -17.23791 -16.98948 -16.71886 -16.11391 -15.99016 -15.66075 -15.42601 -15.19671 -14.80368 -14.72790 -14.40301 -14.30940 -14.16218 -14.05852 -13.76212 -13.53387 -13.33773 -13.28685 -13.13222 -13.09833 -12.76697 -12.72384 -12.53607 -12.49451 -12.11227 -11.97925 -11.82877 -11.67257 -11.62853 -11.53565 -11.38974 -11.04067 -10.80460 -10.71250 -9.76964 -8.86627 -7.83073 -5.17179 1.25638 1.46002 1.46450 1.56417 1.77191 2.33888 2.50655 2.59198 3.00672 3.11838 3.31560 3.36013 3.48450 3.50584 3.79986 3.82619 3.87502 3.90677 4.00083 4.19813 4.20853 4.36747 4.42252 4.50616 4.54291 4.60531 4.63766 4.64530 4.68835 4.79090 4.82676 4.86465 4.88914 4.89473 5.02151 5.06437 5.08144 5.21918 5.43274 5.52848 5.54624 5.66515 5.77329 6.21523 6.26112 6.96284 7.10357 7.80409 8.48705 9.28913 Molecular weight = 328.17amu Principal moments of inertia in cm(-1) A = 0.017276 B = 0.003955 C = 0.003541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1620.317968 B = 7078.140640 C = 7904.385002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.332 3.668 3 F -0.201 7.201 4 F -0.190 7.190 5 C -0.237 4.237 6 C 0.558 3.442 7 O -0.561 6.561 8 N -0.597 5.597 9 C 0.117 3.883 10 C -0.120 4.120 11 C 0.158 3.842 12 H 0.025 0.975 13 C -0.109 4.109 14 H 0.060 0.940 15 C -0.120 4.120 16 C 0.181 3.819 17 N -0.615 5.615 18 C -0.227 4.227 19 H 0.086 0.914 20 C -0.069 4.069 21 N -0.954 5.954 22 Si 0.972 3.028 23 H -0.264 1.264 24 H -0.296 1.296 25 H -0.294 1.294 26 C 0.135 3.865 27 C -0.110 4.110 28 C -0.139 4.139 29 H 0.072 0.928 30 H 0.092 0.908 31 H 0.108 0.892 32 H 0.102 0.898 33 H 0.087 0.913 34 H 0.050 0.950 35 H 0.071 0.929 36 H 0.078 0.922 37 H 0.081 0.919 38 H 0.005 0.995 39 H 0.016 0.984 40 H 0.244 0.756 41 H 0.089 0.911 42 H 0.091 0.909 43 H 0.113 0.887 44 H 0.128 0.872 45 H 0.124 0.876 46 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.324 -21.688 -6.892 22.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C 0.295 3.705 3 F -0.182 7.182 4 F -0.171 7.171 5 C -0.241 4.241 6 C 0.345 3.655 7 O -0.440 6.440 8 N -0.328 5.328 9 C -0.006 4.006 10 C -0.159 4.159 11 C 0.051 3.949 12 H 0.042 0.958 13 C -0.129 4.129 14 H 0.078 0.922 15 C -0.158 4.158 16 C 0.056 3.944 17 N -0.340 5.340 18 C -0.356 4.356 19 H 0.103 0.897 20 C -0.261 4.261 21 N -0.603 5.603 22 Si 0.801 3.199 23 H -0.188 1.188 24 H -0.224 1.224 25 H -0.221 1.221 26 C 0.013 3.987 27 C -0.147 4.147 28 C -0.176 4.176 29 H 0.091 0.909 30 H 0.111 0.889 31 H 0.127 0.873 32 H 0.120 0.880 33 H 0.105 0.895 34 H 0.069 0.931 35 H 0.090 0.910 36 H 0.096 0.904 37 H 0.099 0.901 38 H 0.023 0.977 39 H 0.035 0.965 40 H 0.054 0.946 41 H 0.107 0.893 42 H 0.109 0.891 43 H 0.132 0.868 44 H 0.146 0.854 45 H 0.142 0.858 46 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -0.090 -21.698 -6.645 22.693 hybrid contribution 0.315 1.843 -0.361 1.904 sum 0.225 -19.855 -7.006 21.056 Atomic orbital electron populations 1.22721 0.90122 1.06740 1.05021 1.20092 0.94349 0.74617 0.81433 1.93052 1.90573 1.37950 1.96657 1.93003 1.90663 1.80853 1.52604 1.22247 1.06990 1.02112 0.92783 1.19301 0.82022 0.79572 0.84626 1.90674 1.28545 1.59609 1.65136 1.48291 1.27242 1.30552 1.26722 1.21948 0.85770 0.92756 1.00128 1.21761 1.01844 0.94922 0.97397 1.20870 0.94498 0.83965 0.95565 0.95791 1.22457 0.97890 0.94281 0.98319 0.92160 1.22576 1.00957 0.95166 0.97148 1.21317 0.89925 0.92863 0.90287 1.44493 1.43216 1.00893 1.45371 1.19428 1.13873 0.86464 1.15883 0.89662 1.25590 1.00796 0.99034 1.00727 1.70169 1.37623 1.14615 1.37931 0.85089 0.77833 0.79197 0.77758 1.18772 1.22362 1.22113 1.21547 1.00329 0.90730 0.86052 1.23220 0.98701 0.86802 1.05963 1.23420 0.88233 0.99743 1.06223 0.90913 0.88925 0.87332 0.87970 0.89510 0.93138 0.91032 0.90376 0.90088 0.97694 0.96545 0.94643 0.89310 0.89051 0.86838 0.85402 0.85761 0.86181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.73 9.22 71.98 0.66 -3.07 16 2 C 0.33 7.12 2.09 30.60 0.06 7.18 16 3 F -0.20 -5.39 14.72 44.97 0.66 -4.73 16 4 F -0.19 -3.80 15.64 44.97 0.70 -3.10 16 5 C -0.24 -4.70 0.82 -52.93 -0.04 -4.75 16 6 C 0.56 14.39 5.74 87.66 0.50 14.89 16 7 O -0.56 -17.37 16.27 -3.04 -0.05 -17.42 16 8 N -0.60 -15.67 3.00 -818.05 -2.45 -18.12 16 9 C 0.12 2.88 5.03 86.68 0.44 3.31 16 10 C -0.12 -4.02 5.48 30.43 0.17 -3.86 16 11 C 0.16 6.15 2.57 45.51 0.12 6.27 16 12 H 0.02 0.94 7.92 -2.39 -0.02 0.92 16 13 C -0.11 -3.75 2.86 -9.99 -0.03 -3.78 16 14 H 0.06 2.32 8.12 -2.38 -0.02 2.30 16 15 C -0.12 -4.32 6.54 31.63 0.21 -4.11 16 16 C 0.18 8.96 5.46 86.85 0.47 9.44 16 17 N -0.62 -31.08 3.35 -669.93 -2.24 -33.33 16 18 C -0.23 -12.54 9.88 84.03 0.83 -11.71 16 19 H 0.09 4.46 7.21 -2.91 -0.02 4.44 16 20 C -0.07 -3.93 5.49 84.86 0.47 -3.47 16 21 N -0.95 -57.91 10.43 21.65 0.23 -57.68 16 22 Si 0.97 45.99 29.55 68.60 2.03 48.02 16 23 H -0.26 -11.61 7.11 99.48 0.71 -10.90 16 24 H -0.30 -14.15 7.11 99.48 0.71 -13.44 16 25 H -0.29 -13.93 7.11 99.48 0.71 -13.22 16 26 C 0.14 3.75 5.94 85.89 0.51 4.26 16 27 C -0.11 -1.55 9.61 30.59 0.29 -1.25 16 28 C -0.14 -1.95 7.70 30.60 0.24 -1.71 16 29 H 0.07 1.72 7.18 -2.39 -0.02 1.71 16 30 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 31 H 0.11 1.73 8.14 -2.39 -0.02 1.71 16 32 H 0.10 2.25 3.74 -2.39 -0.01 2.24 16 33 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 34 H 0.05 1.89 7.83 -2.38 -0.02 1.87 16 35 H 0.07 2.44 7.62 -2.39 -0.02 2.42 16 36 H 0.08 2.56 8.14 -2.39 -0.02 2.54 16 37 H 0.08 2.58 8.11 -2.39 -0.02 2.56 16 38 H 0.00 0.27 7.77 -2.38 -0.02 0.25 16 39 H 0.02 0.92 7.20 -2.39 -0.02 0.90 16 40 H 0.24 14.48 8.31 -92.71 -0.77 13.71 16 41 H 0.09 2.20 8.08 -2.39 -0.02 2.18 16 42 H 0.09 2.57 7.03 -2.39 -0.02 2.55 16 43 H 0.11 1.59 8.14 -2.39 -0.02 1.57 16 44 H 0.13 1.41 7.66 -2.39 -0.02 1.39 16 45 H 0.12 1.50 7.91 -2.39 -0.02 1.48 16 46 H 0.12 1.48 7.95 -2.38 -0.02 1.46 16 Total: -1.00 -69.40 359.07 4.75 -64.65 By element: Atomic # 1 Polarization: 13.08 SS G_CDS: 0.98 Total: 14.06 kcal Atomic # 6 Polarization: 2.75 SS G_CDS: 4.90 Total: 7.65 kcal Atomic # 7 Polarization: -104.66 SS G_CDS: -4.47 Total: -109.13 kcal Atomic # 8 Polarization: -17.37 SS G_CDS: -0.05 Total: -17.42 kcal Atomic # 9 Polarization: -9.19 SS G_CDS: 1.37 Total: -7.82 kcal Atomic # 14 Polarization: 45.99 SS G_CDS: 2.03 Total: 48.02 kcal Total: -69.40 4.75 -64.65 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036822174.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.210 kcal (2) G-P(sol) polarization free energy of solvation -69.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.651 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds