Wall clock time and date at job start Tue Mar 31 2020 16:07:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86802 * 119.99844 * 2 1 4 4 H 1.48498 * 109.47063 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47088 * 299.99266 * 3 2 1 6 6 H 1.48494 * 109.47297 * 59.99430 * 3 2 1 7 7 C 1.38811 * 119.99930 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99881 * 180.02562 * 7 2 1 9 9 N 1.36936 * 120.00051 * 0.02562 * 7 2 1 10 10 C 1.47582 * 134.49273 * 359.97438 * 9 7 2 11 11 C 1.53948 * 86.11652 * 155.35841 * 10 9 7 12 12 C 1.47577 * 134.49006 * 179.97438 * 9 7 2 13 13 H 1.09009 * 113.87061 * 90.32999 * 12 9 7 14 14 C 1.53001 * 113.77620 * 318.94498 * 12 9 7 15 15 N 1.46493 * 109.46944 * 78.50088 * 14 12 9 16 16 C 1.34783 * 120.00015 * 180.02562 * 15 14 12 17 17 O 1.21550 * 119.99952 * 0.02562 * 16 15 14 18 18 C 1.47847 * 119.99972 * 180.02562 * 16 15 14 19 19 C 1.39278 * 119.84909 * 325.95300 * 18 16 15 20 20 C 1.37942 * 119.61452 * 180.19041 * 19 18 16 21 21 C 1.38075 * 119.86454 * 359.34869 * 20 19 18 22 22 C 1.39095 * 120.85630 * 359.93057 * 21 20 19 23 23 C 1.37173 * 119.87937 * 1.29967 * 22 21 20 24 24 C 1.50875 * 123.39310 * 177.98248 * 23 22 21 25 25 C 1.52794 * 111.54347 * 29.67064 * 24 23 22 26 26 C 1.52988 * 108.33149 * 268.43171 * 25 24 23 27 27 C 1.52563 * 109.64412 * 60.85129 * 26 25 24 28 28 C 1.50598 * 117.50627 * 182.09649 * 22 21 20 29 29 H 0.97000 * 120.00265 * 0.02562 * 1 2 3 30 30 H 1.08999 * 113.76866 * 41.05714 * 10 9 7 31 31 H 1.09001 * 113.87010 * 269.67105 * 10 9 7 32 32 H 1.09001 * 113.74073 * 269.26055 * 11 10 9 33 33 H 1.08994 * 113.83792 * 137.96267 * 11 10 9 34 34 H 1.09004 * 109.46489 * 318.50946 * 14 12 9 35 35 H 1.08998 * 109.47427 * 198.50570 * 14 12 9 36 36 H 0.97002 * 120.00298 * 0.02562 * 15 14 12 37 37 H 1.08000 * 120.19094 * 0.20857 * 19 18 16 38 38 H 1.07998 * 120.07020 * 179.37813 * 20 19 18 39 39 H 1.08001 * 119.57379 * 179.91093 * 21 20 19 40 40 H 1.08998 * 109.06148 * 269.14487 * 24 23 22 41 41 H 1.08999 * 109.06935 * 150.20084 * 24 23 22 42 42 H 1.09002 * 109.68580 * 148.72586 * 25 24 23 43 43 H 1.08996 * 109.69307 * 28.14757 * 25 24 23 44 44 H 1.08992 * 109.43173 * 180.89268 * 26 25 24 45 45 H 1.08996 * 109.43525 * 300.80785 * 26 25 24 46 46 H 1.09003 * 109.81438 * 152.56802 * 27 26 25 47 47 H 1.09002 * 109.81422 * 273.46240 * 27 26 25 48 48 H 1.08997 * 109.16857 * 350.35903 * 28 22 21 49 49 H 1.09003 * 109.16603 * 109.55967 * 28 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3465 0.0006 5 1 1.8915 2.3964 -1.2126 6 1 1.8913 2.3965 1.2124 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0010 9 7 1.3255 -2.3880 0.0005 10 6 -0.1034 -2.7574 0.0005 11 6 0.3470 -4.0829 -0.6399 12 6 1.7201 -3.8101 0.0005 13 1 1.8326 -4.2367 0.9974 14 6 2.9025 -4.1221 -0.9191 15 7 4.1496 -3.7188 -0.2648 16 6 5.3287 -3.8989 -0.8925 17 8 5.3572 -4.3956 -2.0015 18 6 6.5874 -3.4924 -0.2320 19 6 6.6051 -2.3737 0.5974 20 6 7.7830 -1.9964 1.2081 21 6 8.9308 -2.7364 1.0044 22 6 8.9177 -3.8636 0.1895 23 6 7.7591 -4.2354 -0.4440 24 6 7.6660 -5.4159 -1.3789 25 6 8.6672 -6.5079 -1.0053 26 6 9.9594 -6.2638 -1.7870 27 6 10.5366 -4.9024 -1.4117 28 6 10.2001 -4.6421 0.0584 29 1 -0.4850 0.8400 -0.0004 30 1 -0.7169 -2.1391 -0.6547 31 1 -0.5290 -2.8733 0.9973 32 1 0.3590 -4.0620 -1.7296 33 1 -0.1584 -4.9607 -0.2372 34 1 2.7894 -3.5744 -1.8547 35 1 2.9298 -5.1920 -1.1254 36 1 4.1269 -3.3222 0.6201 37 1 5.7018 -1.8050 0.7617 38 1 7.8074 -1.1244 1.8447 39 1 9.8508 -2.4360 1.4837 40 1 7.8677 -5.0809 -2.3964 41 1 6.6575 -5.8270 -1.3340 42 1 8.2594 -7.4846 -1.2656 43 1 8.8720 -6.4680 0.0645 44 1 10.6820 -7.0432 -1.5455 45 1 9.7463 -6.2853 -2.8557 46 1 11.6182 -4.9096 -1.5467 47 1 10.0909 -4.1274 -2.0353 48 1 11.0110 -4.0759 0.5166 49 1 10.0942 -5.5959 0.5754 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001038373844.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:07:59 Heat of formation + Delta-G solvation = 31.738033 kcal Electronic energy + Delta-G solvation = -28366.806003 eV Core-core repulsion = 24680.755069 eV Total energy + Delta-G solvation = -3686.050934 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 328.189 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.66803 -38.95228 -37.84993 -36.76865 -34.12462 -32.85186 -32.20558 -31.30196 -29.99712 -28.00246 -27.52713 -25.64225 -24.65957 -23.63256 -23.38498 -21.87852 -20.66696 -20.03731 -19.80151 -19.08828 -17.42588 -16.56057 -16.29176 -15.89436 -15.62803 -15.39369 -15.22161 -14.68885 -14.34227 -14.05615 -13.99402 -13.73820 -13.45366 -13.31288 -13.08873 -12.90282 -12.57956 -12.43448 -12.18189 -11.94262 -11.80979 -11.45192 -11.20085 -11.11770 -11.03575 -10.90472 -10.77222 -10.75804 -10.69367 -10.55650 -10.43325 -9.99508 -9.75997 -9.63537 -9.28992 -8.85878 -8.82019 -8.62490 -8.48663 -6.91077 -5.78431 -3.10868 0.97474 1.33791 3.03023 3.36030 3.41000 3.44075 3.52759 3.79773 4.40986 4.50512 4.57051 4.71210 4.79004 4.85515 4.98091 4.98240 5.08673 5.17100 5.17762 5.35431 5.38225 5.40729 5.55180 5.59498 5.61621 5.66199 5.68178 5.74976 5.80978 5.87888 5.90830 6.03450 6.07605 6.09169 6.10932 6.15211 6.29305 6.32462 6.36398 6.39420 6.44153 6.60901 6.61441 6.70696 6.87553 6.90789 7.23426 7.39790 7.57849 7.88313 7.96617 8.53010 9.02268 9.69210 10.57661 11.38353 Molecular weight = 328.19amu Principal moments of inertia in cm(-1) A = 0.015248 B = 0.003383 C = 0.002909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1835.910757 B = 8273.494132 C = 9622.742436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.007 4.007 3 Si 0.906 3.094 4 H -0.280 1.280 5 H -0.290 1.290 6 H -0.291 1.291 7 C -0.218 4.218 8 H 0.078 0.922 9 N -0.602 5.602 10 C 0.159 3.841 11 C -0.155 4.155 12 C 0.125 3.875 13 H 0.049 0.951 14 C 0.123 3.877 15 N -0.707 5.707 16 C 0.553 3.447 17 O -0.542 6.542 18 C -0.131 4.131 19 C -0.086 4.086 20 C -0.129 4.129 21 C -0.100 4.100 22 C -0.090 4.090 23 C -0.020 4.020 24 C -0.082 4.082 25 C -0.127 4.127 26 C -0.122 4.122 27 C -0.118 4.118 28 C -0.082 4.082 29 H 0.253 0.747 30 H 0.074 0.926 31 H 0.026 0.974 32 H 0.076 0.924 33 H 0.053 0.947 34 H 0.073 0.927 35 H 0.061 0.939 36 H 0.403 0.597 37 H 0.132 0.868 38 H 0.127 0.873 39 H 0.122 0.878 40 H 0.082 0.918 41 H 0.086 0.914 42 H 0.064 0.936 43 H 0.072 0.928 44 H 0.059 0.941 45 H 0.063 0.937 46 H 0.065 0.935 47 H 0.067 0.933 48 H 0.067 0.933 49 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.976 -11.665 1.830 21.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.204 4.204 3 Si 0.736 3.264 4 H -0.205 1.205 5 H -0.217 1.217 6 H -0.218 1.218 7 C -0.346 4.346 8 H 0.096 0.904 9 N -0.329 5.329 10 C 0.034 3.966 11 C -0.194 4.194 12 C 0.018 3.982 13 H 0.067 0.933 14 C -0.001 4.001 15 N -0.357 5.357 16 C 0.340 3.660 17 O -0.421 6.421 18 C -0.134 4.134 19 C -0.104 4.104 20 C -0.147 4.147 21 C -0.118 4.118 22 C -0.090 4.090 23 C -0.021 4.021 24 C -0.119 4.119 25 C -0.165 4.165 26 C -0.159 4.159 27 C -0.155 4.155 28 C -0.119 4.119 29 H 0.063 0.937 30 H 0.092 0.908 31 H 0.044 0.956 32 H 0.095 0.905 33 H 0.072 0.928 34 H 0.091 0.909 35 H 0.079 0.921 36 H 0.237 0.763 37 H 0.150 0.850 38 H 0.145 0.855 39 H 0.140 0.860 40 H 0.100 0.900 41 H 0.104 0.896 42 H 0.083 0.917 43 H 0.090 0.910 44 H 0.077 0.923 45 H 0.081 0.919 46 H 0.083 0.917 47 H 0.085 0.915 48 H 0.085 0.915 49 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 17.977 -11.662 1.030 21.453 hybrid contribution 0.333 1.490 0.654 1.660 sum 18.311 -10.172 1.684 21.014 Atomic orbital electron populations 1.69823 1.04956 1.25137 1.56674 1.24752 0.95615 0.97387 1.02597 0.86143 0.78760 0.84139 0.77308 1.20517 1.21710 1.21778 1.18965 0.90110 0.81921 1.43602 0.90412 1.46078 1.02303 0.98552 1.85933 1.22194 0.87924 0.89620 0.96897 1.23771 0.96115 0.98969 1.00589 1.22511 0.92368 0.87690 0.95646 0.93329 1.21783 0.82195 0.98754 0.97388 1.45936 1.05920 1.62557 1.21252 1.18262 0.83559 0.78691 0.85487 1.90730 1.87381 1.44614 1.19390 1.20114 0.94086 0.98367 1.00833 1.21392 0.99062 0.95573 0.94392 1.21020 0.92659 1.00334 1.00713 1.21383 0.98280 0.94602 0.97581 1.19484 0.94581 0.96588 0.98355 1.19683 0.90859 0.95857 0.95738 1.20729 1.00817 0.92292 0.98049 1.21815 0.95321 0.98525 1.00806 1.21639 0.97050 0.96916 1.00304 1.21547 1.00322 0.97859 0.95799 1.20694 0.93659 0.99958 0.97554 0.93732 0.90819 0.95580 0.90496 0.92797 0.90853 0.92093 0.76264 0.85012 0.85503 0.86024 0.89967 0.89574 0.91686 0.91001 0.92257 0.91861 0.91652 0.91468 0.91471 0.90006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.83 11.38 55.49 0.63 -26.20 16 2 C -0.01 -0.19 5.50 -17.43 -0.10 -0.29 16 3 Si 0.91 21.92 29.55 -169.99 -5.02 16.90 16 4 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 5 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 6 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 7 C -0.22 -5.81 10.51 -15.06 -0.16 -5.97 16 8 H 0.08 1.99 7.80 -52.49 -0.41 1.58 16 9 N -0.60 -14.55 3.57 -170.73 -0.61 -15.16 16 10 C 0.16 3.62 7.51 -2.97 -0.02 3.60 16 11 C -0.16 -2.82 7.86 -25.80 -0.20 -3.03 16 12 C 0.13 2.40 4.33 -66.86 -0.29 2.11 16 13 H 0.05 0.89 8.14 -51.92 -0.42 0.47 16 14 C 0.12 2.23 5.54 -4.04 -0.02 2.21 16 15 N -0.71 -12.21 5.43 -61.25 -0.33 -12.54 16 16 C 0.55 9.72 6.87 -12.33 -0.08 9.63 16 17 O -0.54 -10.74 14.25 5.32 0.08 -10.67 16 18 C -0.13 -2.01 5.82 -104.78 -0.61 -2.62 16 19 C -0.09 -1.21 9.31 -39.30 -0.37 -1.58 16 20 C -0.13 -1.55 10.04 -39.75 -0.40 -1.95 16 21 C -0.10 -1.09 9.56 -39.32 -0.38 -1.47 16 22 C -0.09 -1.03 5.14 -104.74 -0.54 -1.57 16 23 C -0.02 -0.28 5.54 -104.13 -0.58 -0.85 16 24 C -0.08 -1.06 4.01 -27.90 -0.11 -1.18 16 25 C -0.13 -1.25 5.62 -26.84 -0.15 -1.40 16 26 C -0.12 -1.03 5.63 -26.96 -0.15 -1.18 16 27 C -0.12 -1.01 5.75 -26.94 -0.15 -1.16 16 28 C -0.08 -0.71 5.17 -27.91 -0.14 -0.86 16 29 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 30 H 0.07 1.87 7.15 -51.93 -0.37 1.50 16 31 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.08 1.38 8.10 -51.93 -0.42 0.96 16 33 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 34 H 0.07 1.52 8.14 -51.93 -0.42 1.10 16 35 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 36 H 0.40 6.65 7.54 -40.82 -0.31 6.34 16 37 H 0.13 1.91 7.50 -52.49 -0.39 1.52 16 38 H 0.13 1.26 8.06 -52.49 -0.42 0.84 16 39 H 0.12 1.01 7.81 -52.49 -0.41 0.60 16 40 H 0.08 1.14 7.68 -51.93 -0.40 0.74 16 41 H 0.09 1.29 5.86 -51.93 -0.30 0.98 16 42 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 43 H 0.07 0.68 5.38 -51.93 -0.28 0.40 16 44 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 45 H 0.06 0.55 8.04 -51.93 -0.42 0.13 16 46 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 47 H 0.07 0.68 7.79 -51.93 -0.40 0.27 16 48 H 0.07 0.49 7.71 -51.93 -0.40 0.09 16 49 H 0.08 0.67 5.76 -51.93 -0.30 0.37 16 LS Contribution 380.87 15.07 5.74 5.74 Total: -1.00 -31.16 380.87 -11.73 -42.89 By element: Atomic # 1 Polarization: 14.34 SS G_CDS: -7.76 Total: 6.58 kcal Atomic # 6 Polarization: -3.09 SS G_CDS: -4.46 Total: -7.54 kcal Atomic # 7 Polarization: -53.59 SS G_CDS: -0.31 Total: -53.90 kcal Atomic # 8 Polarization: -10.74 SS G_CDS: 0.08 Total: -10.67 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -31.16 -11.73 -42.89 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038373844.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.630 kcal (2) G-P(sol) polarization free energy of solvation -31.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.892 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds