Wall clock time and date at job start Tue Mar 31 2020 16:07:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86802 * 119.99844 * 2 1 4 4 H 1.48498 * 109.47063 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47088 * 299.99266 * 3 2 1 6 6 H 1.48494 * 109.47297 * 59.99430 * 3 2 1 7 7 C 1.38811 * 119.99930 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99881 * 180.02562 * 7 2 1 9 9 N 1.36936 * 120.00051 * 0.02562 * 7 2 1 10 10 C 1.47582 * 134.49273 * 359.97438 * 9 7 2 11 11 C 1.53948 * 86.11652 * 155.35841 * 10 9 7 12 12 C 1.47577 * 134.49006 * 179.97438 * 9 7 2 13 13 H 1.09009 * 113.87061 * 90.32999 * 12 9 7 14 14 C 1.53001 * 113.77620 * 318.94498 * 12 9 7 15 15 N 1.46493 * 109.46944 * 78.50088 * 14 12 9 16 16 C 1.34783 * 120.00015 * 180.02562 * 15 14 12 17 17 O 1.21550 * 119.99952 * 0.02562 * 16 15 14 18 18 C 1.47847 * 119.99972 * 180.02562 * 16 15 14 19 19 C 1.39278 * 119.84909 * 325.95300 * 18 16 15 20 20 C 1.37942 * 119.61452 * 180.19041 * 19 18 16 21 21 C 1.38075 * 119.86454 * 359.34869 * 20 19 18 22 22 C 1.39095 * 120.85630 * 359.93057 * 21 20 19 23 23 C 1.37173 * 119.87937 * 1.29967 * 22 21 20 24 24 C 1.50875 * 123.39310 * 177.98248 * 23 22 21 25 25 C 1.52794 * 111.54347 * 29.67064 * 24 23 22 26 26 C 1.52988 * 108.33149 * 268.43171 * 25 24 23 27 27 C 1.52563 * 109.64412 * 60.85129 * 26 25 24 28 28 C 1.50598 * 117.50627 * 182.09649 * 22 21 20 29 29 H 0.97000 * 120.00265 * 0.02562 * 1 2 3 30 30 H 1.08999 * 113.76866 * 41.05714 * 10 9 7 31 31 H 1.09001 * 113.87010 * 269.67105 * 10 9 7 32 32 H 1.09001 * 113.74073 * 269.26055 * 11 10 9 33 33 H 1.08994 * 113.83792 * 137.96267 * 11 10 9 34 34 H 1.09004 * 109.46489 * 318.50946 * 14 12 9 35 35 H 1.08998 * 109.47427 * 198.50570 * 14 12 9 36 36 H 0.97002 * 120.00298 * 0.02562 * 15 14 12 37 37 H 1.08000 * 120.19094 * 0.20857 * 19 18 16 38 38 H 1.07998 * 120.07020 * 179.37813 * 20 19 18 39 39 H 1.08001 * 119.57379 * 179.91093 * 21 20 19 40 40 H 1.08998 * 109.06148 * 269.14487 * 24 23 22 41 41 H 1.08999 * 109.06935 * 150.20084 * 24 23 22 42 42 H 1.09002 * 109.68580 * 148.72586 * 25 24 23 43 43 H 1.08996 * 109.69307 * 28.14757 * 25 24 23 44 44 H 1.08992 * 109.43173 * 180.89268 * 26 25 24 45 45 H 1.08996 * 109.43525 * 300.80785 * 26 25 24 46 46 H 1.09003 * 109.81438 * 152.56802 * 27 26 25 47 47 H 1.09002 * 109.81422 * 273.46240 * 27 26 25 48 48 H 1.08997 * 109.16857 * 350.35903 * 28 22 21 49 49 H 1.09003 * 109.16603 * 109.55967 * 28 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3465 0.0006 5 1 1.8915 2.3964 -1.2126 6 1 1.8913 2.3965 1.2124 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0010 9 7 1.3255 -2.3880 0.0005 10 6 -0.1034 -2.7574 0.0005 11 6 0.3470 -4.0829 -0.6399 12 6 1.7201 -3.8101 0.0005 13 1 1.8326 -4.2367 0.9974 14 6 2.9025 -4.1221 -0.9191 15 7 4.1496 -3.7188 -0.2648 16 6 5.3287 -3.8989 -0.8925 17 8 5.3572 -4.3956 -2.0015 18 6 6.5874 -3.4924 -0.2320 19 6 6.6051 -2.3737 0.5974 20 6 7.7830 -1.9964 1.2081 21 6 8.9308 -2.7364 1.0044 22 6 8.9177 -3.8636 0.1895 23 6 7.7591 -4.2354 -0.4440 24 6 7.6660 -5.4159 -1.3789 25 6 8.6672 -6.5079 -1.0053 26 6 9.9594 -6.2638 -1.7870 27 6 10.5366 -4.9024 -1.4117 28 6 10.2001 -4.6421 0.0584 29 1 -0.4850 0.8400 -0.0004 30 1 -0.7169 -2.1391 -0.6547 31 1 -0.5290 -2.8733 0.9973 32 1 0.3590 -4.0620 -1.7296 33 1 -0.1584 -4.9607 -0.2372 34 1 2.7894 -3.5744 -1.8547 35 1 2.9298 -5.1920 -1.1254 36 1 4.1269 -3.3222 0.6201 37 1 5.7018 -1.8050 0.7617 38 1 7.8074 -1.1244 1.8447 39 1 9.8508 -2.4360 1.4837 40 1 7.8677 -5.0809 -2.3964 41 1 6.6575 -5.8270 -1.3340 42 1 8.2594 -7.4846 -1.2656 43 1 8.8720 -6.4680 0.0645 44 1 10.6820 -7.0432 -1.5455 45 1 9.7463 -6.2853 -2.8557 46 1 11.6182 -4.9096 -1.5467 47 1 10.0909 -4.1274 -2.0353 48 1 11.0110 -4.0759 0.5166 49 1 10.0942 -5.5959 0.5754 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001038373844.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:07:59 Heat of formation + Delta-G solvation = 14.693605 kcal Electronic energy + Delta-G solvation = -28367.545105 eV Core-core repulsion = 24680.755069 eV Total energy + Delta-G solvation = -3686.790036 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 328.189 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.74611 -40.27547 -39.42517 -37.64707 -35.59629 -34.22832 -33.78629 -32.20196 -31.00276 -29.89435 -29.00673 -26.45184 -25.54375 -25.30899 -24.85187 -23.36309 -21.71480 -21.28439 -20.79721 -20.51670 -18.90273 -18.12882 -17.43045 -17.16139 -16.83956 -16.77204 -16.33287 -16.11091 -15.64040 -15.54670 -15.15535 -15.04507 -14.67271 -14.63800 -14.18264 -14.00774 -13.71051 -13.37716 -13.35962 -13.21763 -13.05427 -12.98829 -12.86127 -12.69203 -12.58985 -12.29487 -12.07689 -11.85891 -11.58824 -11.57837 -11.53196 -11.51712 -11.38663 -11.19038 -10.86144 -10.70717 -10.11352 -9.73893 -9.54636 -8.89587 -7.88065 -5.19648 -0.07374 0.36998 1.41469 1.43235 1.51492 1.77188 2.17962 2.46057 2.74946 3.31064 3.37283 3.65401 3.68953 3.76304 3.95156 3.97574 4.01797 4.09773 4.12888 4.20479 4.29502 4.32653 4.36303 4.52563 4.57578 4.60885 4.68267 4.73279 4.76876 4.83762 4.87314 4.93820 5.03525 5.04627 5.07391 5.08628 5.17430 5.30481 5.32699 5.34670 5.38519 5.40609 5.43457 5.46927 5.55443 5.60506 5.66808 5.73398 5.97284 5.97297 6.49978 6.94761 7.15283 7.64255 8.59046 9.28963 Molecular weight = 328.19amu Principal moments of inertia in cm(-1) A = 0.015248 B = 0.003383 C = 0.002909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1835.910757 B = 8273.494132 C = 9622.742436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C -0.070 4.070 3 Si 0.964 3.036 4 H -0.265 1.265 5 H -0.299 1.299 6 H -0.292 1.292 7 C -0.212 4.212 8 H 0.083 0.917 9 N -0.629 5.629 10 C 0.150 3.850 11 C -0.130 4.130 12 C 0.132 3.868 13 H 0.070 0.930 14 C 0.133 3.867 15 N -0.706 5.706 16 C 0.551 3.449 17 O -0.572 6.572 18 C -0.156 4.156 19 C -0.100 4.100 20 C -0.130 4.130 21 C -0.091 4.091 22 C -0.088 4.088 23 C -0.033 4.033 24 C -0.076 4.076 25 C -0.122 4.122 26 C -0.119 4.119 27 C -0.117 4.117 28 C -0.081 4.081 29 H 0.245 0.755 30 H 0.039 0.961 31 H 0.023 0.977 32 H 0.077 0.923 33 H 0.095 0.905 34 H 0.042 0.958 35 H 0.081 0.919 36 H 0.406 0.594 37 H 0.120 0.880 38 H 0.149 0.851 39 H 0.158 0.842 40 H 0.064 0.936 41 H 0.058 0.942 42 H 0.068 0.932 43 H 0.080 0.920 44 H 0.081 0.919 45 H 0.055 0.945 46 H 0.087 0.913 47 H 0.045 0.955 48 H 0.091 0.909 49 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.367 -12.892 3.186 25.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.603 5.603 2 C -0.263 4.263 3 Si 0.794 3.206 4 H -0.190 1.190 5 H -0.227 1.227 6 H -0.219 1.219 7 C -0.340 4.340 8 H 0.101 0.899 9 N -0.356 5.356 10 C 0.025 3.975 11 C -0.169 4.169 12 C 0.026 3.974 13 H 0.088 0.912 14 C 0.008 3.992 15 N -0.356 5.356 16 C 0.340 3.660 17 O -0.454 6.454 18 C -0.159 4.159 19 C -0.119 4.119 20 C -0.148 4.148 21 C -0.109 4.109 22 C -0.088 4.088 23 C -0.034 4.034 24 C -0.113 4.113 25 C -0.159 4.159 26 C -0.157 4.157 27 C -0.154 4.154 28 C -0.117 4.117 29 H 0.054 0.946 30 H 0.057 0.943 31 H 0.041 0.959 32 H 0.096 0.904 33 H 0.113 0.887 34 H 0.061 0.939 35 H 0.099 0.901 36 H 0.241 0.759 37 H 0.138 0.862 38 H 0.167 0.833 39 H 0.176 0.824 40 H 0.082 0.918 41 H 0.077 0.923 42 H 0.087 0.913 43 H 0.099 0.901 44 H 0.099 0.901 45 H 0.074 0.926 46 H 0.105 0.895 47 H 0.064 0.936 48 H 0.110 0.890 49 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 21.393 -12.922 2.401 25.108 hybrid contribution -0.676 1.805 0.234 1.941 sum 20.716 -11.118 2.635 23.658 Atomic orbital electron populations 1.70000 1.06245 1.25100 1.59005 1.25495 0.96417 1.00432 1.03926 0.85210 0.78414 0.80488 0.76537 1.18963 1.22684 1.21870 1.19311 0.90597 0.83088 1.41022 0.89924 1.46425 1.03300 0.99924 1.85906 1.22164 0.87065 0.91769 0.96487 1.23564 0.94958 0.97890 1.00441 1.22671 0.93254 0.84742 0.96724 0.91230 1.21576 0.82408 0.99418 0.95773 1.45915 1.05736 1.62600 1.21324 1.18698 0.84326 0.77884 0.85135 1.90703 1.87873 1.46080 1.20721 1.20056 0.93599 0.99839 1.02392 1.21396 0.99842 0.95485 0.95178 1.21317 0.92107 1.01047 1.00345 1.21816 0.99157 0.93485 0.96415 1.19863 0.94859 0.96873 0.97225 1.19858 0.91233 0.95969 0.96357 1.20616 1.00319 0.93172 0.97213 1.21799 0.95222 0.97373 1.01518 1.21628 0.96634 0.97777 0.99646 1.21547 1.01489 0.97004 0.95385 1.20779 0.92686 1.00446 0.97833 0.94580 0.94289 0.95913 0.90405 0.88677 0.93945 0.90062 0.75852 0.86195 0.83301 0.82403 0.91763 0.92315 0.91303 0.90143 0.90066 0.92576 0.89453 0.93599 0.89034 0.88917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.64 11.38 21.65 0.25 -57.39 16 2 C -0.07 -3.98 5.50 84.86 0.47 -3.51 16 3 Si 0.96 46.04 29.55 68.60 2.03 48.07 16 4 H -0.27 -11.84 7.11 99.48 0.71 -11.14 16 5 H -0.30 -14.60 7.11 99.48 0.71 -13.90 16 6 H -0.29 -13.83 7.11 99.48 0.71 -13.12 16 7 C -0.21 -11.43 10.51 84.03 0.88 -10.55 16 8 H 0.08 4.27 7.80 -2.91 -0.02 4.25 16 9 N -0.63 -30.70 3.57 -694.08 -2.48 -33.18 16 10 C 0.15 6.96 7.51 86.48 0.65 7.61 16 11 C -0.13 -4.54 7.86 31.26 0.25 -4.29 16 12 C 0.13 4.92 4.33 45.10 0.20 5.12 16 13 H 0.07 2.40 8.14 -2.38 -0.02 2.38 16 14 C 0.13 4.81 5.54 86.38 0.48 5.29 16 15 N -0.71 -24.72 5.43 -465.97 -2.53 -27.25 16 16 C 0.55 19.96 6.87 86.79 0.60 20.55 16 17 O -0.57 -23.67 14.25 -3.87 -0.06 -23.73 16 18 C -0.16 -4.83 5.82 -19.97 -0.12 -4.94 16 19 C -0.10 -2.80 9.31 22.45 0.21 -2.59 16 20 C -0.13 -2.82 10.04 22.16 0.22 -2.60 16 21 C -0.09 -1.66 9.56 22.44 0.21 -1.44 16 22 C -0.09 -1.80 5.14 -19.94 -0.10 -1.90 16 23 C -0.03 -0.89 5.54 -19.54 -0.11 -0.99 16 24 C -0.08 -2.00 4.01 29.83 0.12 -1.88 16 25 C -0.12 -2.23 5.62 30.52 0.17 -2.06 16 26 C -0.12 -1.75 5.63 30.45 0.17 -1.58 16 27 C -0.12 -1.66 5.75 30.46 0.18 -1.49 16 28 C -0.08 -1.10 5.17 29.83 0.15 -0.95 16 29 H 0.25 14.51 8.31 -92.71 -0.77 13.74 16 30 H 0.04 2.06 7.15 -2.39 -0.02 2.04 16 31 H 0.02 1.07 8.14 -2.39 -0.02 1.05 16 32 H 0.08 2.72 8.10 -2.39 -0.02 2.70 16 33 H 0.09 2.60 8.14 -2.39 -0.02 2.58 16 34 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 35 H 0.08 2.62 8.14 -2.39 -0.02 2.60 16 36 H 0.41 13.54 7.54 -92.71 -0.70 12.84 16 37 H 0.12 3.54 7.50 -2.91 -0.02 3.51 16 38 H 0.15 2.51 8.06 -2.91 -0.02 2.49 16 39 H 0.16 1.76 7.81 -2.91 -0.02 1.73 16 40 H 0.06 1.87 7.68 -2.39 -0.02 1.85 16 41 H 0.06 1.84 5.86 -2.39 -0.01 1.82 16 42 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 43 H 0.08 1.33 5.38 -2.39 -0.01 1.32 16 44 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 45 H 0.06 0.90 8.04 -2.39 -0.02 0.89 16 46 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 47 H 0.05 0.86 7.79 -2.39 -0.02 0.84 16 48 H 0.09 0.85 7.71 -2.39 -0.02 0.83 16 49 H 0.09 1.12 5.76 -2.39 -0.01 1.11 16 Total: -1.00 -70.70 380.87 2.09 -68.62 By element: Atomic # 1 Polarization: 26.83 SS G_CDS: 0.25 Total: 27.08 kcal Atomic # 6 Polarization: -6.84 SS G_CDS: 4.63 Total: -2.21 kcal Atomic # 7 Polarization: -113.06 SS G_CDS: -4.76 Total: -117.82 kcal Atomic # 8 Polarization: -23.67 SS G_CDS: -0.06 Total: -23.73 kcal Atomic # 14 Polarization: 46.04 SS G_CDS: 2.03 Total: 48.07 kcal Total: -70.70 2.09 -68.62 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038373844.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.310 kcal (2) G-P(sol) polarization free energy of solvation -70.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.616 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds