Wall clock time and date at job start Tue Mar 31 2020 16:08:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86804 * 120.00443 * 2 1 4 4 H 1.48495 * 109.47199 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.46840 * 300.00216 * 3 2 1 6 6 H 1.48498 * 109.46827 * 59.99745 * 3 2 1 7 7 C 1.38819 * 120.00208 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00156 * 179.97438 * 7 2 1 9 9 N 1.36938 * 119.99405 * 359.97438 * 7 2 1 10 10 C 1.47068 * 136.06182 * 359.94877 * 9 7 2 11 11 C 1.53497 * 87.98687 * 207.15510 * 10 9 7 12 12 C 1.47067 * 136.05485 * 180.02562 * 9 7 2 13 13 H 1.09002 * 113.46849 * 267.68665 * 12 9 7 14 14 C 1.53003 * 113.47021 * 38.06426 * 12 9 7 15 15 N 1.46508 * 109.46948 * 285.49705 * 14 12 9 16 16 C 1.34774 * 119.99650 * 179.97438 * 15 14 12 17 17 O 1.21547 * 119.99986 * 0.02562 * 16 15 14 18 18 C 1.47847 * 119.99649 * 180.02562 * 16 15 14 19 19 C 1.38968 * 119.77922 * 325.85829 * 18 16 15 20 20 C 1.37940 * 119.59880 * 180.11607 * 19 18 16 21 21 C 1.38074 * 119.85778 * 359.26759 * 20 19 18 22 22 C 1.39066 * 120.86535 * 0.12406 * 21 20 19 23 23 C 1.37120 * 119.80306 * 1.18732 * 22 21 20 24 24 C 1.50858 * 123.33805 * 177.70988 * 23 22 21 25 25 C 1.52791 * 111.57513 * 29.65800 * 24 23 22 26 26 C 1.52983 * 108.27062 * 268.38486 * 25 24 23 27 27 C 1.52559 * 109.69304 * 60.81591 * 26 25 24 28 28 C 1.50599 * 117.56298 * 181.63007 * 22 21 20 29 29 H 0.96997 * 119.99955 * 359.97438 * 1 2 3 30 30 H 1.09000 * 113.46705 * 321.93736 * 10 9 7 31 31 H 1.09006 * 113.46606 * 92.37366 * 10 9 7 32 32 H 1.09002 * 114.20404 * 220.34649 * 11 10 9 33 33 H 1.08999 * 114.20478 * 87.51771 * 11 10 9 34 34 H 1.08995 * 109.47275 * 165.49776 * 14 12 9 35 35 H 1.09000 * 109.46785 * 45.49229 * 14 12 9 36 36 H 0.96997 * 119.99657 * 359.97438 * 15 14 12 37 37 H 1.08002 * 120.21228 * 0.16920 * 19 18 16 38 38 H 1.08004 * 120.07506 * 179.24071 * 20 19 18 39 39 H 1.08005 * 119.56682 * 180.10241 * 21 20 19 40 40 H 1.09005 * 109.06036 * 269.11942 * 24 23 22 41 41 H 1.08998 * 109.06364 * 150.19761 * 24 23 22 42 42 H 1.09000 * 109.70452 * 148.68924 * 25 24 23 43 43 H 1.08999 * 109.70264 * 28.07778 * 25 24 23 44 44 H 1.08992 * 109.43430 * 300.74240 * 26 25 24 45 45 H 1.09007 * 109.39283 * 180.85528 * 26 25 24 46 46 H 1.09001 * 109.82171 * 273.50505 * 27 26 25 47 47 H 1.09007 * 109.87777 * 152.60884 * 27 26 25 48 48 H 1.08998 * 109.15709 * 109.88009 * 28 22 21 49 49 H 1.09000 * 109.16132 * 350.64993 * 28 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 -0.0878 -2.7949 0.0008 11 6 0.3424 -4.0921 0.6996 12 6 1.6798 -3.8154 -0.0005 13 1 1.7452 -4.2464 -0.9996 14 6 2.8990 -4.1406 0.8648 15 7 4.1154 -3.6902 0.1835 16 6 5.3187 -3.8726 0.7625 17 8 5.3948 -4.4111 1.8495 18 6 6.5462 -3.4176 0.0753 19 6 6.6227 -3.4750 -1.3111 20 6 7.7705 -3.0518 -1.9482 21 6 8.8271 -2.5611 -1.2070 22 6 8.7530 -2.4888 0.1798 23 6 7.6276 -2.9316 0.8261 24 6 7.4819 -2.9370 2.3277 25 6 8.2931 -1.8155 2.9749 26 6 9.6780 -2.3646 3.3228 27 6 10.3823 -2.8264 2.0507 28 6 9.9336 -1.9066 0.9114 29 1 -0.4850 0.8400 0.0004 30 1 -0.7220 -2.1588 0.6184 31 1 -0.4947 -2.9541 -0.9979 32 1 -0.1729 -4.9839 0.3429 33 1 0.3842 -4.0215 1.7865 34 1 2.9517 -5.2169 1.0285 35 1 2.8100 -3.6309 1.8241 36 1 4.0546 -3.2608 -0.6841 37 1 5.7882 -3.8479 -1.8864 38 1 7.8429 -3.1044 -3.0245 39 1 9.7230 -2.2295 -1.7108 40 1 7.8272 -3.8955 2.7154 41 1 6.4302 -2.8090 2.5837 42 1 7.7933 -1.4771 3.8825 43 1 8.3920 -0.9839 2.2773 44 1 9.5729 -3.2075 4.0056 45 1 10.2680 -1.5822 3.8003 46 1 10.1029 -3.8559 1.8265 47 1 11.4625 -2.7562 2.1789 48 1 9.6561 -0.9363 1.3232 49 1 10.7588 -1.7752 0.2115 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001038373847.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:08:03 Heat of formation + Delta-G solvation = 35.772306 kcal Electronic energy + Delta-G solvation = -28556.021142 eV Core-core repulsion = 24870.145147 eV Total energy + Delta-G solvation = -3685.875995 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 328.189 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.66089 -38.98990 -37.99931 -36.75052 -34.11174 -32.81345 -32.23101 -31.29420 -29.97118 -28.05653 -27.48775 -25.61178 -24.61819 -23.58823 -23.48140 -21.75430 -20.65755 -20.01830 -19.74564 -19.20239 -17.41611 -16.53673 -16.31926 -15.88472 -15.61169 -15.35665 -15.19227 -14.63757 -14.39619 -14.09430 -13.83641 -13.79061 -13.40078 -13.28914 -13.14191 -12.80925 -12.50998 -12.41889 -12.16633 -11.93960 -11.82415 -11.54029 -11.19376 -11.11739 -10.99092 -10.85030 -10.79404 -10.71507 -10.64088 -10.57032 -10.39250 -9.98388 -9.83712 -9.53528 -9.20617 -8.84387 -8.83291 -8.61300 -8.46467 -6.91728 -5.78710 -3.11224 0.99169 1.34452 3.02760 3.36493 3.42673 3.44602 3.51680 3.85012 4.41772 4.53250 4.61797 4.76231 4.83844 4.87339 4.96336 5.01878 5.13787 5.20578 5.21345 5.38324 5.41187 5.44566 5.54357 5.57965 5.63171 5.67967 5.71275 5.77904 5.84891 5.90016 5.91933 6.08199 6.09978 6.13781 6.14639 6.25341 6.30357 6.33328 6.38434 6.39120 6.43448 6.58076 6.64512 6.71078 6.88406 6.91497 7.21337 7.37537 7.56519 7.89781 7.95901 8.53894 9.01482 9.68651 10.60938 11.38526 Molecular weight = 328.19amu Principal moments of inertia in cm(-1) A = 0.012281 B = 0.003728 C = 0.003404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2279.374944 B = 7509.854252 C = 8223.601171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.006 4.006 3 Si 0.906 3.094 4 H -0.279 1.279 5 H -0.290 1.290 6 H -0.290 1.290 7 C -0.213 4.213 8 H 0.081 0.919 9 N -0.601 5.601 10 C 0.151 3.849 11 C -0.161 4.161 12 C 0.127 3.873 13 H 0.048 0.952 14 C 0.121 3.879 15 N -0.706 5.706 16 C 0.553 3.447 17 O -0.542 6.542 18 C -0.128 4.128 19 C -0.088 4.088 20 C -0.130 4.130 21 C -0.101 4.101 22 C -0.087 4.087 23 C -0.018 4.018 24 C -0.083 4.083 25 C -0.129 4.129 26 C -0.121 4.121 27 C -0.116 4.116 28 C -0.083 4.083 29 H 0.252 0.748 30 H 0.072 0.928 31 H 0.025 0.975 32 H 0.058 0.942 33 H 0.080 0.920 34 H 0.060 0.940 35 H 0.072 0.928 36 H 0.403 0.597 37 H 0.127 0.873 38 H 0.126 0.874 39 H 0.122 0.878 40 H 0.082 0.918 41 H 0.088 0.912 42 H 0.066 0.934 43 H 0.072 0.928 44 H 0.062 0.938 45 H 0.059 0.941 46 H 0.066 0.934 47 H 0.065 0.935 48 H 0.083 0.917 49 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.520 -7.337 -0.308 18.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.203 4.203 3 Si 0.736 3.264 4 H -0.204 1.204 5 H -0.217 1.217 6 H -0.217 1.217 7 C -0.340 4.340 8 H 0.098 0.902 9 N -0.327 5.327 10 C 0.026 3.974 11 C -0.200 4.200 12 C 0.019 3.981 13 H 0.065 0.935 14 C -0.003 4.003 15 N -0.356 5.356 16 C 0.339 3.661 17 O -0.422 6.422 18 C -0.131 4.131 19 C -0.107 4.107 20 C -0.148 4.148 21 C -0.119 4.119 22 C -0.087 4.087 23 C -0.019 4.019 24 C -0.120 4.120 25 C -0.166 4.166 26 C -0.159 4.159 27 C -0.154 4.154 28 C -0.120 4.120 29 H 0.063 0.937 30 H 0.090 0.910 31 H 0.043 0.957 32 H 0.077 0.923 33 H 0.098 0.902 34 H 0.078 0.922 35 H 0.090 0.910 36 H 0.238 0.762 37 H 0.145 0.855 38 H 0.144 0.856 39 H 0.140 0.860 40 H 0.100 0.900 41 H 0.106 0.894 42 H 0.085 0.915 43 H 0.091 0.909 44 H 0.081 0.919 45 H 0.078 0.922 46 H 0.084 0.916 47 H 0.083 0.917 48 H 0.101 0.899 49 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 17.571 -7.343 0.472 19.049 hybrid contribution 0.289 1.171 -0.815 1.455 sum 17.860 -6.172 -0.342 18.899 Atomic orbital electron populations 1.69831 1.04963 1.25156 1.56521 1.24757 0.95613 0.97382 1.02538 0.86133 0.78858 0.84049 0.77315 1.20436 1.21744 1.21678 1.18899 0.90028 0.81323 1.43775 0.90158 1.45683 1.02602 0.98554 1.85858 1.22029 0.88712 0.90187 0.96490 1.23656 0.96874 0.99059 1.00390 1.22417 0.92037 0.87823 0.95827 0.93489 1.21835 0.83010 0.98225 0.97231 1.45937 1.05784 1.60418 1.23433 1.18266 0.83422 0.79193 0.85173 1.90725 1.87138 1.43708 1.20623 1.20031 0.95167 1.04074 0.93864 1.21167 0.98305 0.98124 0.93094 1.20972 0.93632 1.00255 0.99959 1.21367 0.98668 0.98581 0.93283 1.19483 0.95151 1.00538 0.93554 1.19689 0.91277 0.94933 0.96013 1.20739 1.02375 0.99212 0.89669 1.21819 0.95348 0.98597 1.00845 1.21641 0.96243 1.00657 0.97348 1.21558 0.99535 0.99723 0.94565 1.20731 0.94660 0.99487 0.97150 0.93740 0.90976 0.95749 0.92331 0.90187 0.92184 0.90995 0.76174 0.85518 0.85598 0.86017 0.90018 0.89366 0.91510 0.90928 0.91894 0.92232 0.91558 0.91654 0.89867 0.91459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.90 11.51 55.49 0.64 -26.26 16 2 C -0.01 -0.17 5.50 -17.43 -0.10 -0.27 16 3 Si 0.91 22.12 29.55 -169.99 -5.02 17.09 16 4 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 5 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 6 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 7 C -0.21 -5.71 10.55 -15.06 -0.16 -5.87 16 8 H 0.08 2.10 7.50 -52.49 -0.39 1.70 16 9 N -0.60 -14.57 3.65 -177.00 -0.65 -15.22 16 10 C 0.15 3.45 7.39 -8.51 -0.06 3.38 16 11 C -0.16 -2.91 8.03 -26.23 -0.21 -3.12 16 12 C 0.13 2.43 4.10 -72.41 -0.30 2.13 16 13 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 14 C 0.12 2.20 5.52 -4.04 -0.02 2.18 16 15 N -0.71 -12.33 5.23 -61.25 -0.32 -12.65 16 16 C 0.55 9.77 6.87 -12.33 -0.08 9.69 16 17 O -0.54 -10.78 14.24 5.32 0.08 -10.70 16 18 C -0.13 -1.99 5.81 -104.91 -0.61 -2.59 16 19 C -0.09 -1.16 9.30 -39.42 -0.37 -1.53 16 20 C -0.13 -1.48 10.04 -39.75 -0.40 -1.88 16 21 C -0.10 -1.11 9.56 -39.33 -0.38 -1.49 16 22 C -0.09 -1.06 5.13 -104.77 -0.54 -1.59 16 23 C -0.02 -0.26 5.54 -104.16 -0.58 -0.84 16 24 C -0.08 -1.19 4.01 -27.91 -0.11 -1.30 16 25 C -0.13 -1.50 5.63 -26.85 -0.15 -1.65 16 26 C -0.12 -1.15 5.62 -26.97 -0.15 -1.30 16 27 C -0.12 -1.05 5.76 -26.88 -0.15 -1.21 16 28 C -0.08 -0.80 5.18 -27.85 -0.14 -0.94 16 29 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 30 H 0.07 1.84 7.12 -51.93 -0.37 1.47 16 31 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.08 1.44 8.12 -51.93 -0.42 1.02 16 34 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 35 H 0.07 1.48 8.14 -51.93 -0.42 1.06 16 36 H 0.40 6.81 7.44 -40.82 -0.30 6.51 16 37 H 0.13 1.48 7.50 -52.49 -0.39 1.09 16 38 H 0.13 1.11 8.06 -52.48 -0.42 0.69 16 39 H 0.12 1.02 7.81 -52.48 -0.41 0.61 16 40 H 0.08 1.17 7.68 -51.93 -0.40 0.78 16 41 H 0.09 1.51 5.86 -51.93 -0.30 1.21 16 42 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 43 H 0.07 0.85 5.38 -51.93 -0.28 0.57 16 44 H 0.06 0.59 8.04 -51.93 -0.42 0.17 16 45 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 46 H 0.07 0.67 7.79 -51.93 -0.40 0.27 16 47 H 0.06 0.48 8.14 -51.92 -0.42 0.06 16 48 H 0.08 0.80 5.75 -51.93 -0.30 0.50 16 49 H 0.07 0.53 7.71 -51.93 -0.40 0.13 16 LS Contribution 380.27 15.07 5.73 5.73 Total: -1.00 -31.39 380.27 -11.79 -43.18 By element: Atomic # 1 Polarization: 14.76 SS G_CDS: -7.74 Total: 7.02 kcal Atomic # 6 Polarization: -3.69 SS G_CDS: -4.51 Total: -8.20 kcal Atomic # 7 Polarization: -53.80 SS G_CDS: -0.33 Total: -54.13 kcal Atomic # 8 Polarization: -10.78 SS G_CDS: 0.08 Total: -10.70 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -31.39 -11.79 -43.18 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038373847.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.956 kcal (2) G-P(sol) polarization free energy of solvation -31.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.183 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds