Wall clock time and date at job start Tue Mar 31 2020 16:08:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86804 * 120.00443 * 2 1 4 4 H 1.48495 * 109.47199 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.46840 * 300.00216 * 3 2 1 6 6 H 1.48498 * 109.46827 * 59.99745 * 3 2 1 7 7 C 1.38819 * 120.00208 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00156 * 179.97438 * 7 2 1 9 9 N 1.36938 * 119.99405 * 359.97438 * 7 2 1 10 10 C 1.47068 * 136.06182 * 359.94877 * 9 7 2 11 11 C 1.53497 * 87.98687 * 207.15510 * 10 9 7 12 12 C 1.47067 * 136.05485 * 180.02562 * 9 7 2 13 13 H 1.09002 * 113.46849 * 267.68665 * 12 9 7 14 14 C 1.53003 * 113.47021 * 38.06426 * 12 9 7 15 15 N 1.46508 * 109.46948 * 285.49705 * 14 12 9 16 16 C 1.34774 * 119.99650 * 179.97438 * 15 14 12 17 17 O 1.21547 * 119.99986 * 0.02562 * 16 15 14 18 18 C 1.47847 * 119.99649 * 180.02562 * 16 15 14 19 19 C 1.38968 * 119.77922 * 325.85829 * 18 16 15 20 20 C 1.37940 * 119.59880 * 180.11607 * 19 18 16 21 21 C 1.38074 * 119.85778 * 359.26759 * 20 19 18 22 22 C 1.39066 * 120.86535 * 0.12406 * 21 20 19 23 23 C 1.37120 * 119.80306 * 1.18732 * 22 21 20 24 24 C 1.50858 * 123.33805 * 177.70988 * 23 22 21 25 25 C 1.52791 * 111.57513 * 29.65800 * 24 23 22 26 26 C 1.52983 * 108.27062 * 268.38486 * 25 24 23 27 27 C 1.52559 * 109.69304 * 60.81591 * 26 25 24 28 28 C 1.50599 * 117.56298 * 181.63007 * 22 21 20 29 29 H 0.96997 * 119.99955 * 359.97438 * 1 2 3 30 30 H 1.09000 * 113.46705 * 321.93736 * 10 9 7 31 31 H 1.09006 * 113.46606 * 92.37366 * 10 9 7 32 32 H 1.09002 * 114.20404 * 220.34649 * 11 10 9 33 33 H 1.08999 * 114.20478 * 87.51771 * 11 10 9 34 34 H 1.08995 * 109.47275 * 165.49776 * 14 12 9 35 35 H 1.09000 * 109.46785 * 45.49229 * 14 12 9 36 36 H 0.96997 * 119.99657 * 359.97438 * 15 14 12 37 37 H 1.08002 * 120.21228 * 0.16920 * 19 18 16 38 38 H 1.08004 * 120.07506 * 179.24071 * 20 19 18 39 39 H 1.08005 * 119.56682 * 180.10241 * 21 20 19 40 40 H 1.09005 * 109.06036 * 269.11942 * 24 23 22 41 41 H 1.08998 * 109.06364 * 150.19761 * 24 23 22 42 42 H 1.09000 * 109.70452 * 148.68924 * 25 24 23 43 43 H 1.08999 * 109.70264 * 28.07778 * 25 24 23 44 44 H 1.08992 * 109.43430 * 300.74240 * 26 25 24 45 45 H 1.09007 * 109.39283 * 180.85528 * 26 25 24 46 46 H 1.09001 * 109.82171 * 273.50505 * 27 26 25 47 47 H 1.09007 * 109.87777 * 152.60884 * 27 26 25 48 48 H 1.08998 * 109.15709 * 109.88009 * 28 22 21 49 49 H 1.09000 * 109.16132 * 350.64993 * 28 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 -0.0878 -2.7949 0.0008 11 6 0.3424 -4.0921 0.6996 12 6 1.6798 -3.8154 -0.0005 13 1 1.7452 -4.2464 -0.9996 14 6 2.8990 -4.1406 0.8648 15 7 4.1154 -3.6902 0.1835 16 6 5.3187 -3.8726 0.7625 17 8 5.3948 -4.4111 1.8495 18 6 6.5462 -3.4176 0.0753 19 6 6.6227 -3.4750 -1.3111 20 6 7.7705 -3.0518 -1.9482 21 6 8.8271 -2.5611 -1.2070 22 6 8.7530 -2.4888 0.1798 23 6 7.6276 -2.9316 0.8261 24 6 7.4819 -2.9370 2.3277 25 6 8.2931 -1.8155 2.9749 26 6 9.6780 -2.3646 3.3228 27 6 10.3823 -2.8264 2.0507 28 6 9.9336 -1.9066 0.9114 29 1 -0.4850 0.8400 0.0004 30 1 -0.7220 -2.1588 0.6184 31 1 -0.4947 -2.9541 -0.9979 32 1 -0.1729 -4.9839 0.3429 33 1 0.3842 -4.0215 1.7865 34 1 2.9517 -5.2169 1.0285 35 1 2.8100 -3.6309 1.8241 36 1 4.0546 -3.2608 -0.6841 37 1 5.7882 -3.8479 -1.8864 38 1 7.8429 -3.1044 -3.0245 39 1 9.7230 -2.2295 -1.7108 40 1 7.8272 -3.8955 2.7154 41 1 6.4302 -2.8090 2.5837 42 1 7.7933 -1.4771 3.8825 43 1 8.3920 -0.9839 2.2773 44 1 9.5729 -3.2075 4.0056 45 1 10.2680 -1.5822 3.8003 46 1 10.1029 -3.8559 1.8265 47 1 11.4625 -2.7562 2.1789 48 1 9.6561 -0.9363 1.3232 49 1 10.7588 -1.7752 0.2115 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001038373847.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:08:02 Heat of formation + Delta-G solvation = 18.447626 kcal Electronic energy + Delta-G solvation = -28556.772397 eV Core-core repulsion = 24870.145147 eV Total energy + Delta-G solvation = -3686.627249 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 328.189 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.75371 -40.36945 -39.52992 -37.66188 -35.58188 -34.26886 -33.78943 -32.20981 -31.00552 -29.96035 -28.95984 -26.46964 -25.55989 -25.41141 -24.79436 -23.25919 -21.71261 -21.29169 -20.90006 -20.55381 -18.89817 -18.12128 -17.45852 -17.13271 -16.88008 -16.78858 -16.30670 -15.96120 -15.87733 -15.50960 -15.12370 -14.97730 -14.78754 -14.55687 -14.18385 -13.96658 -13.75272 -13.49333 -13.36214 -13.21917 -13.06190 -13.01004 -12.82917 -12.72469 -12.60907 -12.32319 -12.08923 -11.86988 -11.65100 -11.60892 -11.59529 -11.55299 -11.30619 -11.09023 -10.88411 -10.69603 -10.09493 -9.72632 -9.53544 -8.90476 -7.89420 -5.20696 -0.04496 0.39077 1.40749 1.42115 1.50865 1.75768 2.20816 2.45175 2.79034 3.32784 3.41409 3.64969 3.68452 3.76586 3.92522 3.93183 4.00678 4.10137 4.11887 4.19159 4.28946 4.32148 4.35017 4.53297 4.55369 4.61031 4.66699 4.72131 4.76683 4.83850 4.87577 4.90783 5.01838 5.04033 5.06210 5.07522 5.14617 5.27640 5.31273 5.33445 5.35745 5.39588 5.43577 5.46986 5.53643 5.57861 5.67184 5.72832 5.95913 5.98687 6.51317 6.92883 7.16329 7.62457 8.62154 9.28277 Molecular weight = 328.19amu Principal moments of inertia in cm(-1) A = 0.012281 B = 0.003728 C = 0.003404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2279.374944 B = 7509.854252 C = 8223.601171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C -0.068 4.068 3 Si 0.964 3.036 4 H -0.269 1.269 5 H -0.290 1.290 6 H -0.297 1.297 7 C -0.205 4.205 8 H 0.082 0.918 9 N -0.629 5.629 10 C 0.144 3.856 11 C -0.134 4.134 12 C 0.133 3.867 13 H 0.070 0.930 14 C 0.131 3.869 15 N -0.706 5.706 16 C 0.550 3.450 17 O -0.573 6.573 18 C -0.158 4.158 19 C -0.095 4.095 20 C -0.128 4.128 21 C -0.095 4.095 22 C -0.091 4.091 23 C -0.040 4.040 24 C -0.076 4.076 25 C -0.126 4.126 26 C -0.117 4.117 27 C -0.113 4.113 28 C -0.083 4.083 29 H 0.246 0.754 30 H 0.036 0.964 31 H 0.024 0.976 32 H 0.101 0.899 33 H 0.078 0.922 34 H 0.080 0.920 35 H 0.041 0.959 36 H 0.406 0.594 37 H 0.136 0.864 38 H 0.157 0.843 39 H 0.157 0.843 40 H 0.071 0.929 41 H 0.049 0.951 42 H 0.061 0.939 43 H 0.074 0.926 44 H 0.059 0.941 45 H 0.078 0.922 46 H 0.051 0.949 47 H 0.089 0.911 48 H 0.084 0.916 49 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.537 -7.791 -1.811 22.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.602 5.602 2 C -0.261 4.261 3 Si 0.793 3.207 4 H -0.194 1.194 5 H -0.217 1.217 6 H -0.224 1.224 7 C -0.333 4.333 8 H 0.100 0.900 9 N -0.355 5.355 10 C 0.018 3.982 11 C -0.173 4.173 12 C 0.027 3.973 13 H 0.088 0.912 14 C 0.006 3.994 15 N -0.355 5.355 16 C 0.339 3.661 17 O -0.455 6.455 18 C -0.161 4.161 19 C -0.114 4.114 20 C -0.146 4.146 21 C -0.112 4.112 22 C -0.091 4.091 23 C -0.041 4.041 24 C -0.113 4.113 25 C -0.163 4.163 26 C -0.155 4.155 27 C -0.150 4.150 28 C -0.120 4.120 29 H 0.055 0.945 30 H 0.054 0.946 31 H 0.042 0.958 32 H 0.119 0.881 33 H 0.097 0.903 34 H 0.098 0.902 35 H 0.059 0.941 36 H 0.242 0.758 37 H 0.154 0.846 38 H 0.175 0.825 39 H 0.175 0.825 40 H 0.089 0.911 41 H 0.068 0.932 42 H 0.080 0.920 43 H 0.093 0.907 44 H 0.078 0.922 45 H 0.097 0.903 46 H 0.070 0.930 47 H 0.108 0.892 48 H 0.102 0.898 49 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 20.608 -7.830 -1.043 22.070 hybrid contribution -0.619 1.229 -0.367 1.424 sum 19.989 -6.601 -1.410 21.098 Atomic orbital electron populations 1.70001 1.06195 1.25132 1.58829 1.25475 0.96394 1.00330 1.03863 0.85213 0.78208 0.80561 0.76687 1.19385 1.21745 1.22430 1.19176 0.90344 0.82557 1.41240 0.90013 1.45989 1.03691 0.99966 1.85865 1.22046 0.87705 0.92055 0.96401 1.23478 0.95668 0.98175 0.99935 1.22568 0.92917 0.84843 0.96982 0.91231 1.21635 0.83182 0.98974 0.95614 1.45912 1.05635 1.60517 1.23462 1.18716 0.84145 0.78434 0.84811 1.90696 1.87631 1.45125 1.22029 1.20021 0.94608 1.06443 0.95056 1.21369 0.99645 0.98243 0.92144 1.21373 0.92727 0.98910 1.01580 1.21826 0.99673 0.96946 0.92795 1.19826 0.95015 0.99702 0.94518 1.19832 0.92256 0.96231 0.95734 1.20588 1.00346 0.99725 0.90626 1.21814 0.96448 0.97729 1.00358 1.21613 0.94925 1.01040 0.97907 1.21549 1.00843 0.98712 0.93945 1.20804 0.94348 0.99176 0.97674 0.94538 0.94576 0.95823 0.88070 0.90334 0.90163 0.94064 0.75832 0.84615 0.82519 0.82496 0.91095 0.93240 0.92024 0.90741 0.92216 0.90335 0.93028 0.89220 0.89792 0.88824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.56 11.51 21.65 0.25 -57.31 16 2 C -0.07 -3.86 5.50 84.86 0.47 -3.39 16 3 Si 0.96 46.40 29.55 68.60 2.03 48.42 16 4 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 5 H -0.29 -13.85 7.11 99.48 0.71 -13.14 16 6 H -0.30 -14.49 7.11 99.48 0.71 -13.78 16 7 C -0.20 -11.13 10.55 84.03 0.89 -10.25 16 8 H 0.08 4.31 7.50 -2.91 -0.02 4.29 16 9 N -0.63 -30.71 3.65 -713.91 -2.61 -33.32 16 10 C 0.14 6.59 7.39 83.18 0.61 7.21 16 11 C -0.13 -4.64 8.03 30.92 0.25 -4.39 16 12 C 0.13 4.95 4.10 41.78 0.17 5.12 16 13 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 14 C 0.13 4.73 5.52 86.38 0.48 5.20 16 15 N -0.71 -24.83 5.23 -465.96 -2.44 -27.26 16 16 C 0.55 20.06 6.87 86.79 0.60 20.66 16 17 O -0.57 -23.91 14.24 -3.86 -0.06 -23.96 16 18 C -0.16 -4.93 5.81 -20.05 -0.12 -5.04 16 19 C -0.10 -2.39 9.30 22.37 0.21 -2.18 16 20 C -0.13 -2.50 10.04 22.16 0.22 -2.28 16 21 C -0.09 -1.74 9.56 22.43 0.21 -1.53 16 22 C -0.09 -2.00 5.13 -19.96 -0.10 -2.10 16 23 C -0.04 -1.14 5.54 -19.57 -0.11 -1.25 16 24 C -0.08 -2.27 4.01 29.83 0.12 -2.15 16 25 C -0.13 -2.94 5.63 30.52 0.17 -2.77 16 26 C -0.12 -2.05 5.62 30.44 0.17 -1.88 16 27 C -0.11 -1.77 5.76 30.50 0.18 -1.59 16 28 C -0.08 -1.34 5.18 29.87 0.15 -1.18 16 29 H 0.25 14.52 8.31 -92.71 -0.77 13.75 16 30 H 0.04 1.90 7.12 -2.39 -0.02 1.89 16 31 H 0.02 1.09 8.14 -2.38 -0.02 1.07 16 32 H 0.10 2.71 8.14 -2.39 -0.02 2.69 16 33 H 0.08 2.76 8.12 -2.39 -0.02 2.74 16 34 H 0.08 2.59 8.14 -2.39 -0.02 2.57 16 35 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 36 H 0.41 13.66 7.44 -92.71 -0.69 12.97 16 37 H 0.14 3.00 7.50 -2.91 -0.02 2.98 16 38 H 0.16 2.07 8.06 -2.91 -0.02 2.04 16 39 H 0.16 1.78 7.81 -2.91 -0.02 1.76 16 40 H 0.07 2.18 7.68 -2.38 -0.02 2.16 16 41 H 0.05 1.83 5.86 -2.39 -0.01 1.82 16 42 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 43 H 0.07 1.69 5.38 -2.39 -0.01 1.68 16 44 H 0.06 1.08 8.04 -2.39 -0.02 1.06 16 45 H 0.08 1.09 8.14 -2.38 -0.02 1.08 16 46 H 0.05 0.97 7.79 -2.39 -0.02 0.95 16 47 H 0.09 0.99 8.14 -2.38 -0.02 0.98 16 48 H 0.08 1.38 5.75 -2.39 -0.01 1.36 16 49 H 0.09 1.03 7.71 -2.39 -0.02 1.01 16 Total: -1.00 -71.43 380.27 2.01 -69.42 By element: Atomic # 1 Polarization: 27.56 SS G_CDS: 0.26 Total: 27.82 kcal Atomic # 6 Polarization: -8.38 SS G_CDS: 4.57 Total: -3.81 kcal Atomic # 7 Polarization: -113.09 SS G_CDS: -4.80 Total: -117.89 kcal Atomic # 8 Polarization: -23.91 SS G_CDS: -0.06 Total: -23.96 kcal Atomic # 14 Polarization: 46.40 SS G_CDS: 2.03 Total: 48.42 kcal Total: -71.43 2.01 -69.42 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038373847.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.865 kcal (2) G-P(sol) polarization free energy of solvation -71.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.417 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds