Wall clock time and date at job start Tue Mar 31 2020 14:53:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 F 1.39902 * 109.47279 * 2 1 4 4 F 1.39902 * 109.47012 * 240.00377 * 2 1 3 5 5 C 1.52999 * 109.47302 * 120.00368 * 2 1 3 6 6 C 1.50705 * 115.55080 * 304.86716 * 5 2 1 7 7 O 1.21279 * 119.99846 * 102.21323 * 6 5 2 8 8 N 1.34775 * 119.99637 * 282.22059 * 6 5 2 9 9 C 1.46946 * 120.44151 * 174.85590 * 8 6 5 10 10 C 1.53596 * 108.52275 * 125.76025 * 9 8 6 11 11 H 1.08998 * 110.60011 * 172.17806 * 10 9 8 12 12 C 1.53368 * 109.19804 * 294.10327 * 10 9 8 13 13 C 1.54670 * 108.58293 * 60.06460 * 12 10 9 14 14 C 1.53018 * 109.72358 * 60.85009 * 13 12 10 15 15 C 1.53364 * 109.24505 * 299.33134 * 14 13 12 16 16 H 1.09005 * 111.08712 * 177.85038 * 15 14 13 17 17 C 1.46949 * 120.44407 * 354.87817 * 8 6 5 18 18 N 1.47565 * 107.98554 * 56.39301 * 15 14 13 19 19 C 1.36942 * 121.60954 * 122.26908 * 18 15 14 20 20 H 1.07995 * 119.99742 * 158.80960 * 19 18 15 21 21 C 1.38811 * 119.99922 * 338.81216 * 19 18 15 22 22 N 1.31621 * 119.99838 * 327.28836 * 21 19 18 23 23 Si 1.86799 * 119.99935 * 147.28959 * 21 19 18 24 24 H 1.48500 * 109.47317 * 89.99744 * 23 21 19 25 25 H 1.48506 * 109.47209 * 209.99958 * 23 21 19 26 26 H 1.48503 * 109.47189 * 329.99700 * 23 21 19 27 27 C 1.52996 * 117.51802 * 90.56294 * 5 2 1 28 28 C 1.52992 * 59.99998 * 107.48391 * 27 5 2 29 29 H 1.09003 * 109.46949 * 305.48191 * 1 2 3 30 30 H 1.09003 * 109.47647 * 65.48014 * 1 2 3 31 31 H 1.09001 * 109.47349 * 185.48374 * 1 2 3 32 32 H 1.08994 * 109.63240 * 6.05130 * 9 8 6 33 33 H 1.09000 * 109.78855 * 245.56457 * 9 8 6 34 34 H 1.09006 * 109.50136 * 180.51772 * 12 10 9 35 35 H 1.08997 * 109.50395 * 300.64404 * 12 10 9 36 36 H 1.08995 * 109.52190 * 300.72732 * 13 12 10 37 37 H 1.09004 * 109.33588 * 180.84964 * 13 12 10 38 38 H 1.08999 * 109.50822 * 179.39877 * 14 13 12 39 39 H 1.08995 * 109.54528 * 59.28903 * 14 13 12 40 40 H 1.08991 * 109.62666 * 353.93005 * 17 8 6 41 41 H 1.08993 * 109.62367 * 114.31144 * 17 8 6 42 42 H 0.96996 * 120.00282 * 356.33639 * 22 21 19 43 43 H 1.08999 * 117.50267 * 214.97304 * 27 5 2 44 44 H 1.08998 * 117.49932 * 359.97438 * 27 5 2 45 45 H 1.09007 * 117.50226 * 252.51222 * 28 27 5 46 46 H 1.09005 * 117.52278 * 107.48072 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 9 1.9963 1.3190 0.0000 4 9 1.9963 -0.6594 -1.1423 5 6 2.0400 -0.7213 1.2492 6 6 1.5238 -0.1913 2.5621 7 8 0.6406 -0.7801 3.1486 8 7 2.0438 0.9372 3.0844 9 6 1.4732 1.5246 4.3045 10 6 2.5995 1.7009 5.3339 11 1 2.2437 2.2595 6.1996 12 6 3.1161 0.3205 5.7576 13 6 3.6542 -0.4102 4.5050 14 6 4.8071 0.3903 3.8957 15 6 4.2971 1.7762 3.4819 16 1 5.1047 2.3867 3.0777 17 6 3.1885 1.5968 2.4410 18 7 3.7063 2.4182 4.6720 19 6 4.1594 3.6242 5.1363 20 1 3.5271 4.2324 5.7660 21 6 5.4313 4.0649 4.7975 22 7 6.4048 3.1958 4.6255 23 14 5.7615 5.8912 4.5857 24 1 6.1765 6.4734 5.8873 25 1 6.8444 6.0861 3.5884 26 1 4.5260 6.5661 4.1131 27 6 2.2882 -2.2273 1.1440 28 6 3.4715 -1.2604 1.2187 29 1 -0.3633 0.5965 0.8369 30 1 -0.3634 0.4265 -0.9350 31 1 -0.3634 -1.0230 0.0982 32 1 0.7091 0.8603 4.7080 33 1 1.0314 2.4944 4.0754 34 1 3.9097 0.4396 6.4953 35 1 2.2992 -0.2566 6.1908 36 1 2.8550 -0.5109 3.7707 37 1 4.0111 -1.3999 4.7901 38 1 5.1905 -0.1330 3.0197 39 1 5.6037 0.5002 4.6315 40 1 3.5523 0.9798 1.6195 41 1 2.8827 2.5709 2.0596 42 1 6.2470 2.2525 4.7871 43 1 2.0783 -2.8348 2.0243 44 1 2.0877 -2.7047 0.1848 45 1 4.0499 -1.1015 0.3085 46 1 4.0402 -1.2312 2.1482 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001039918693.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:53:35 Heat of formation + Delta-G solvation = -51.615720 kcal Electronic energy + Delta-G solvation = -32045.798676 eV Core-core repulsion = 27801.903722 eV Total energy + Delta-G solvation = -4243.894954 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 328.170 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -49.12854 -47.10185 -41.10705 -38.36260 -36.59283 -34.19437 -32.94862 -32.14998 -31.44549 -30.24902 -27.14790 -25.93652 -24.92726 -23.67898 -22.79712 -22.39659 -21.48774 -21.12035 -19.47613 -18.56308 -17.84339 -17.44445 -16.93506 -16.38275 -15.94840 -15.47675 -15.06626 -14.63215 -14.35201 -14.17305 -13.86412 -13.77658 -13.59702 -13.37586 -13.26531 -13.10561 -12.95659 -12.69347 -12.60411 -12.37607 -12.29937 -12.16334 -11.76819 -11.75511 -11.52394 -11.14336 -10.82075 -10.75305 -10.68870 -10.40076 -10.34723 -10.32987 -10.19469 -9.98242 -9.73509 -9.60945 -9.25575 -8.47503 -8.02698 -6.88413 -6.20265 -3.20110 2.49645 3.00974 3.33067 3.47248 3.52362 3.58278 3.67148 3.95203 4.14617 4.39320 4.44675 4.52362 4.74259 4.82343 4.99061 5.22986 5.27881 5.38037 5.43309 5.51817 5.52153 5.56549 5.61523 5.64167 5.67954 5.70531 5.73606 5.82047 5.89817 6.02413 6.13855 6.18758 6.26080 6.30061 6.35570 6.47605 6.61163 6.75445 6.80313 6.88664 7.03647 7.11670 7.67417 7.88434 8.27597 8.48536 9.00036 9.76046 10.22561 11.12686 Molecular weight = 328.17amu Principal moments of inertia in cm(-1) A = 0.016585 B = 0.005183 C = 0.004732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1687.828302 B = 5401.382899 C = 5915.558288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.335 3.665 3 F -0.188 7.188 4 F -0.194 7.194 5 C -0.218 4.218 6 C 0.557 3.443 7 O -0.542 6.542 8 N -0.577 5.577 9 C 0.100 3.900 10 C 0.155 3.845 11 H 0.079 0.921 12 C -0.124 4.124 13 C -0.140 4.140 14 C -0.128 4.128 15 C 0.155 3.845 16 H 0.109 0.891 17 C 0.092 3.908 18 N -0.585 5.585 19 C -0.352 4.352 20 H 0.061 0.939 21 C -0.021 4.021 22 N -0.908 5.908 23 Si 1.057 2.943 24 H -0.295 1.295 25 H -0.286 1.286 26 H -0.293 1.293 27 C -0.125 4.125 28 C -0.157 4.157 29 H 0.088 0.912 30 H 0.083 0.917 31 H 0.092 0.908 32 H 0.083 0.917 33 H 0.067 0.933 34 H 0.058 0.942 35 H 0.046 0.954 36 H 0.083 0.917 37 H 0.035 0.965 38 H 0.047 0.953 39 H 0.065 0.935 40 H 0.079 0.921 41 H 0.069 0.931 42 H 0.273 0.727 43 H 0.111 0.889 44 H 0.111 0.889 45 H 0.112 0.888 46 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.646 -8.777 -8.449 14.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C 0.298 3.702 3 F -0.169 7.169 4 F -0.175 7.175 5 C -0.222 4.222 6 C 0.344 3.656 7 O -0.421 6.421 8 N -0.308 5.308 9 C -0.023 4.023 10 C 0.047 3.953 11 H 0.097 0.903 12 C -0.163 4.163 13 C -0.178 4.178 14 C -0.167 4.167 15 C 0.047 3.953 16 H 0.126 0.874 17 C -0.032 4.032 18 N -0.307 5.307 19 C -0.481 4.481 20 H 0.079 0.921 21 C -0.223 4.223 22 N -0.549 5.549 23 Si 0.887 3.113 24 H -0.223 1.223 25 H -0.212 1.212 26 H -0.219 1.219 27 C -0.162 4.162 28 C -0.193 4.193 29 H 0.107 0.893 30 H 0.102 0.898 31 H 0.111 0.889 32 H 0.102 0.898 33 H 0.085 0.915 34 H 0.077 0.923 35 H 0.065 0.935 36 H 0.101 0.899 37 H 0.054 0.946 38 H 0.066 0.934 39 H 0.084 0.916 40 H 0.097 0.903 41 H 0.087 0.913 42 H 0.085 0.915 43 H 0.129 0.871 44 H 0.129 0.871 45 H 0.130 0.870 46 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -7.915 -7.841 -8.537 14.036 hybrid contribution -0.928 -0.932 0.417 1.380 sum -8.842 -8.773 -8.120 14.869 Atomic orbital electron populations 1.22701 0.90769 1.05902 1.05155 1.19995 0.93706 0.75262 0.81231 1.93070 1.90446 1.36741 1.96608 1.92996 1.90681 1.81081 1.52786 1.22343 1.04788 1.00432 0.94615 1.18622 0.81848 0.80885 0.84261 1.90681 1.31579 1.58179 1.61663 1.48104 1.31980 1.24154 1.26549 1.22284 0.97098 0.97735 0.85227 1.21181 0.88842 0.91929 0.93359 0.90288 1.22228 0.99743 0.97117 0.97197 1.22427 0.99501 0.96975 0.98912 1.22083 0.97854 0.97108 0.99664 1.21200 0.94298 0.92616 0.87153 0.87366 1.22582 0.86973 0.97372 0.96228 1.44504 1.38059 1.21203 1.26913 1.19913 0.99762 0.93955 1.34424 0.92085 1.25656 0.90564 1.05963 1.00160 1.70800 1.31062 1.04685 1.48346 0.83662 0.75333 0.75598 0.76717 1.22292 1.21182 1.21928 1.23074 0.99957 0.88372 1.04835 1.23493 0.89194 1.00791 1.05847 0.89309 0.89812 0.88899 0.89844 0.91506 0.92325 0.93526 0.89945 0.94649 0.93441 0.91636 0.90296 0.91257 0.91528 0.87069 0.87078 0.87009 0.86190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.06 9.03 37.15 0.34 -1.73 16 2 C 0.33 4.34 2.09 -26.73 -0.06 4.28 16 3 F -0.19 -2.79 14.53 2.25 0.03 -2.76 16 4 F -0.19 -2.43 15.65 2.25 0.04 -2.39 16 5 C -0.22 -2.96 0.85 -155.66 -0.13 -3.09 16 6 C 0.56 9.10 3.36 -10.98 -0.04 9.06 16 7 O -0.54 -9.95 16.33 5.56 0.09 -9.86 16 8 N -0.58 -9.99 1.65 -172.53 -0.28 -10.28 16 9 C 0.10 1.80 5.91 -3.49 -0.02 1.78 16 10 C 0.15 3.08 3.58 -66.85 -0.24 2.84 16 11 H 0.08 1.57 8.01 -51.93 -0.42 1.16 16 12 C -0.12 -2.33 5.72 -25.66 -0.15 -2.48 16 13 C -0.14 -2.53 4.70 -25.84 -0.12 -2.65 16 14 C -0.13 -2.46 5.02 -26.53 -0.13 -2.60 16 15 C 0.16 3.28 2.47 -67.09 -0.17 3.12 16 16 H 0.11 2.64 5.89 -51.93 -0.31 2.34 16 17 C 0.09 1.68 4.22 -3.73 -0.02 1.67 16 18 N -0.58 -13.44 2.45 -155.70 -0.38 -13.82 16 19 C -0.35 -9.22 9.58 -15.06 -0.14 -9.36 16 20 H 0.06 1.62 8.01 -52.49 -0.42 1.20 16 21 C -0.02 -0.56 4.64 -17.43 -0.08 -0.64 16 22 N -0.91 -25.55 12.26 55.49 0.68 -24.86 16 23 Si 1.06 24.26 30.02 -169.99 -5.10 19.16 16 24 H -0.30 -6.69 7.11 56.52 0.40 -6.29 16 25 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 26 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 27 C -0.13 -1.42 9.55 -26.74 -0.26 -1.67 16 28 C -0.16 -1.94 7.73 -26.74 -0.21 -2.14 16 29 H 0.09 1.07 7.65 -51.93 -0.40 0.67 16 30 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 32 H 0.08 1.45 6.98 -51.93 -0.36 1.08 16 33 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 34 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 35 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.08 1.44 1.94 -52.45 -0.10 1.34 16 37 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.05 0.81 6.37 -51.93 -0.33 0.48 16 39 H 0.06 1.43 6.61 -51.93 -0.34 1.09 16 40 H 0.08 1.30 4.14 -51.93 -0.22 1.09 16 41 H 0.07 1.34 8.06 -51.93 -0.42 0.92 16 42 H 0.27 7.60 5.45 -40.82 -0.22 7.38 16 43 H 0.11 1.29 8.14 -51.93 -0.42 0.86 16 44 H 0.11 1.05 7.64 -51.93 -0.40 0.65 16 45 H 0.11 1.26 7.93 -51.93 -0.41 0.84 16 46 H 0.12 1.62 4.27 -51.93 -0.22 1.39 16 LS Contribution 338.61 15.07 5.10 5.10 Total: -1.00 -28.96 338.61 -7.57 -36.53 By element: Atomic # 1 Polarization: 13.14 SS G_CDS: -6.32 Total: 6.82 kcal Atomic # 6 Polarization: -2.20 SS G_CDS: -1.42 Total: -3.63 kcal Atomic # 7 Polarization: -48.98 SS G_CDS: 0.01 Total: -48.97 kcal Atomic # 8 Polarization: -9.95 SS G_CDS: 0.09 Total: -9.86 kcal Atomic # 9 Polarization: -5.22 SS G_CDS: 0.07 Total: -5.15 kcal Atomic # 14 Polarization: 24.26 SS G_CDS: -5.10 Total: 19.16 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -28.96 -7.57 -36.53 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039918693.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.087 kcal (2) G-P(sol) polarization free energy of solvation -28.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.529 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds