Wall clock time and date at job start Tue Mar 31 2020 16:11:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86794 * 119.99963 * 2 1 4 4 H 1.48496 * 109.47455 * 179.97438 * 3 2 1 5 5 H 1.48505 * 109.47077 * 300.00156 * 3 2 1 6 6 H 1.48503 * 109.47292 * 59.99956 * 3 2 1 7 7 C 1.38814 * 120.00007 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99920 * 197.25697 * 7 2 1 9 9 N 1.36935 * 119.99910 * 17.25740 * 7 2 1 10 10 C 1.46932 * 120.67611 * 207.37793 * 9 7 2 11 11 C 1.53188 * 108.89454 * 233.98589 * 10 9 7 12 12 C 1.53128 * 109.28616 * 304.93365 * 11 10 9 13 13 C 1.52500 * 109.60132 * 60.52100 * 12 11 10 14 14 C 1.54164 * 110.05147 * 178.24385 * 13 12 11 15 15 C 1.55045 * 102.73442 * 219.40881 * 14 13 12 16 16 N 1.48166 * 103.31423 * 36.99001 * 15 14 13 17 17 C 1.34771 * 127.02812 * 140.94338 * 16 15 14 18 18 O 1.21284 * 120.00451 * 180.02562 * 17 16 15 19 19 C 1.50700 * 119.99931 * 0.03741 * 17 16 15 20 20 C 1.50295 * 109.46791 * 300.01215 * 19 17 16 21 21 C 1.32316 * 121.60537 * 303.33798 * 20 19 17 22 22 C 1.45202 * 123.00202 * 1.00387 * 21 20 19 23 23 C 1.32943 * 125.20210 * 319.52857 * 22 21 20 24 24 C 1.45198 * 125.19298 * 0.02939 * 23 22 21 25 25 C 1.32294 * 123.03235 * 40.42741 * 24 23 22 26 26 C 1.47612 * 105.94230 * 320.96898 * 16 15 14 27 27 C 1.47032 * 120.68095 * 27.35543 * 9 7 2 28 28 H 0.96995 * 120.00448 * 359.97438 * 1 2 3 29 29 H 1.09000 * 109.56440 * 114.16587 * 10 9 7 30 30 H 1.08992 * 109.56457 * 353.81331 * 10 9 7 31 31 H 1.08998 * 109.50437 * 184.99006 * 11 10 9 32 32 H 1.09003 * 109.50120 * 64.87293 * 11 10 9 33 33 H 1.08996 * 109.44881 * 300.47924 * 12 11 10 34 34 H 1.08999 * 109.42522 * 180.54347 * 12 11 10 35 35 H 1.09004 * 110.75584 * 337.71850 * 14 13 12 36 36 H 1.08995 * 110.75635 * 101.09809 * 14 13 12 37 37 H 1.08996 * 110.64631 * 278.53295 * 15 14 13 38 38 H 1.08997 * 110.79262 * 155.50990 * 15 14 13 39 39 H 1.09003 * 109.46746 * 60.00214 * 19 17 16 40 40 H 1.07997 * 119.20418 * 123.31722 * 20 19 17 41 41 H 1.07993 * 118.50534 * 180.97257 * 21 20 19 42 42 H 1.07999 * 117.39656 * 139.56191 * 22 21 20 43 43 H 1.07992 * 117.40071 * 180.02562 * 23 22 21 44 44 H 1.08009 * 118.48340 * 220.45256 * 24 23 22 45 45 H 1.07993 * 119.20813 * 179.00008 * 25 24 23 46 46 H 1.08996 * 109.97895 * 266.00718 * 26 16 15 47 47 H 1.09010 * 109.96924 * 144.74338 * 26 16 15 48 48 H 1.09007 * 109.58387 * 7.45100 * 27 9 7 49 49 H 1.09003 * 109.58226 * 247.03913 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8914 2.3964 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0538 -1.2231 0.2780 9 7 1.3718 -2.3615 -0.3508 10 6 1.8230 -3.6558 0.1786 11 6 2.0819 -4.6079 -0.9931 12 6 0.8224 -4.6982 -1.8593 13 6 0.4776 -3.3171 -2.4063 14 6 -0.7641 -3.4037 -3.3159 15 6 -0.4103 -2.4314 -4.4706 16 7 1.0441 -2.6411 -4.6598 17 6 1.7134 -2.6786 -5.8290 18 8 2.9126 -2.8601 -5.8358 19 6 0.9719 -2.4948 -7.1279 20 6 -0.0664 -3.5723 -7.2688 21 6 0.2551 -4.8551 -7.2246 22 6 1.6140 -5.3231 -7.0180 23 6 2.7010 -4.7851 -7.5624 24 6 2.7107 -3.6392 -8.4541 25 6 1.9405 -2.5788 -8.2740 26 6 1.6102 -2.8012 -3.3059 27 6 0.2206 -2.3366 -1.2650 28 1 -0.4850 0.8400 0.0004 29 1 1.0520 -4.0743 0.8256 30 1 2.7428 -3.5172 0.7466 31 1 2.3316 -5.5973 -0.6097 32 1 2.9098 -4.2299 -1.5930 33 1 -0.0071 -5.0672 -1.2562 34 1 1.0010 -5.3828 -2.6885 35 1 -0.8974 -4.4181 -3.6921 36 1 -1.6551 -3.0667 -2.7863 37 1 -0.6158 -1.4007 -4.1817 38 1 -0.9572 -2.6917 -5.3768 39 1 0.4859 -1.5191 -7.1339 40 1 -1.1001 -3.2929 -7.4093 41 1 -0.5290 -5.5874 -7.3473 42 1 1.7527 -6.1766 -6.3709 43 1 3.6524 -5.2363 -7.3223 44 1 3.3773 -3.6535 -9.3039 45 1 2.0098 -1.7534 -8.9669 46 1 1.9706 -1.8410 -2.9371 47 1 2.4271 -3.5227 -3.3268 48 1 0.0957 -1.3315 -1.6680 49 1 -0.6802 -2.6309 -0.7263 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001040224816.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:11:22 Heat of formation + Delta-G solvation = 47.090272 kcal Electronic energy + Delta-G solvation = -29918.335292 eV Core-core repulsion = 26232.950081 eV Total energy + Delta-G solvation = -3685.385211 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 328.189 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.50914 -39.01151 -36.86530 -35.67194 -33.21098 -32.50642 -32.27290 -31.15418 -30.00171 -28.68052 -26.95160 -25.34762 -24.97985 -23.63366 -23.10768 -22.10826 -20.38265 -20.12809 -18.23805 -17.96879 -17.54157 -17.22705 -16.75743 -16.13844 -15.49383 -14.96274 -14.74407 -14.47288 -14.15662 -13.99825 -13.80051 -13.37480 -13.13442 -13.00652 -12.67649 -12.52508 -12.47391 -12.37928 -12.18076 -11.84566 -11.70605 -11.48991 -11.12677 -10.95346 -10.93281 -10.89873 -10.65653 -10.35664 -10.25060 -10.20266 -10.11643 -9.78495 -9.71277 -9.43581 -9.37884 -9.21578 -8.48209 -8.29401 -8.09465 -6.67605 -5.80314 -3.20848 1.24651 1.98737 2.90094 3.23677 3.36844 3.42519 3.45543 3.48364 4.49320 4.66085 4.71420 4.88631 4.94314 5.00629 5.07079 5.11528 5.23900 5.26550 5.38454 5.44815 5.54934 5.59638 5.65380 5.70255 5.74153 5.83686 5.87629 5.93294 6.11722 6.14317 6.19167 6.28060 6.32932 6.40199 6.42296 6.49355 6.50420 6.59898 6.69379 6.72610 6.76812 6.79493 6.85387 6.87706 6.96750 7.02984 7.30883 7.60236 7.80363 7.97202 8.43413 8.53989 9.20614 9.83994 10.40798 11.28303 Molecular weight = 328.19amu Principal moments of inertia in cm(-1) A = 0.015067 B = 0.004224 C = 0.003849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1857.960304 B = 6627.832418 C = 7273.189668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.003 3.997 3 Si 0.897 3.103 4 H -0.277 1.277 5 H -0.289 1.289 6 H -0.290 1.290 7 C -0.248 4.248 8 H 0.066 0.934 9 N -0.591 5.591 10 C 0.145 3.855 11 C -0.138 4.138 12 C -0.092 4.092 13 C -0.093 4.093 14 C -0.121 4.121 15 C 0.098 3.902 16 N -0.613 5.613 17 C 0.539 3.461 18 O -0.538 6.538 19 C -0.046 4.046 20 C -0.141 4.141 21 C -0.108 4.108 22 C -0.145 4.145 23 C -0.074 4.074 24 C -0.104 4.104 25 C -0.126 4.126 26 C 0.130 3.870 27 C 0.188 3.812 28 H 0.252 0.748 29 H 0.017 0.983 30 H 0.052 0.948 31 H 0.049 0.951 32 H 0.059 0.941 33 H 0.056 0.944 34 H 0.045 0.955 35 H 0.065 0.935 36 H 0.081 0.919 37 H 0.074 0.926 38 H 0.076 0.924 39 H 0.103 0.897 40 H 0.121 0.879 41 H 0.116 0.884 42 H 0.109 0.891 43 H 0.111 0.889 44 H 0.115 0.885 45 H 0.118 0.882 46 H 0.078 0.922 47 H 0.066 0.934 48 H 0.090 0.910 49 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.977 -9.238 -15.113 17.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.195 4.195 3 Si 0.727 3.273 4 H -0.202 1.202 5 H -0.216 1.216 6 H -0.217 1.217 7 C -0.377 4.377 8 H 0.083 0.917 9 N -0.313 5.313 10 C 0.019 3.981 11 C -0.178 4.178 12 C -0.130 4.130 13 C -0.095 4.095 14 C -0.160 4.160 15 C -0.025 4.025 16 N -0.346 5.346 17 C 0.327 3.673 18 O -0.415 6.415 19 C -0.067 4.067 20 C -0.160 4.160 21 C -0.126 4.126 22 C -0.163 4.163 23 C -0.092 4.092 24 C -0.122 4.122 25 C -0.144 4.144 26 C 0.008 3.992 27 C 0.062 3.938 28 H 0.062 0.938 29 H 0.035 0.965 30 H 0.070 0.930 31 H 0.068 0.932 32 H 0.078 0.922 33 H 0.075 0.925 34 H 0.063 0.937 35 H 0.084 0.916 36 H 0.100 0.900 37 H 0.092 0.908 38 H 0.094 0.906 39 H 0.121 0.879 40 H 0.139 0.861 41 H 0.134 0.866 42 H 0.127 0.873 43 H 0.129 0.871 44 H 0.133 0.867 45 H 0.136 0.864 46 H 0.096 0.904 47 H 0.084 0.916 48 H 0.108 0.892 49 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges -2.349 -9.179 -15.158 17.876 hybrid contribution 0.298 0.910 0.084 0.961 sum -2.051 -8.270 -15.075 17.316 Atomic orbital electron populations 1.70029 1.05149 1.25288 1.54317 1.24973 0.95250 0.98218 1.01051 0.86300 0.79574 0.84184 0.77254 1.20240 1.21598 1.21738 1.19227 0.92711 0.84764 1.41041 0.91657 1.44068 1.35358 1.01418 1.50499 1.20901 0.97448 0.86915 0.92867 1.22093 0.97639 0.98969 0.99062 1.21344 0.98010 0.95371 0.98240 1.21837 0.93291 0.97523 0.96859 1.22676 0.98725 0.98774 0.95831 1.22654 0.81032 1.00050 0.98770 1.48849 1.09235 1.70479 1.06069 1.19882 0.87157 0.76649 0.83639 1.90675 1.14495 1.49714 1.86607 1.19199 0.95189 1.00034 0.92293 1.22843 0.98076 0.92911 1.02134 1.21066 0.96009 0.95915 0.99646 1.20963 0.92180 1.02185 1.01000 1.21003 0.97825 0.95131 0.95246 1.20986 0.98570 0.94222 0.98434 1.22699 0.95166 0.98357 0.98216 1.22087 0.96023 1.02004 0.79081 1.20786 0.88641 0.97338 0.87032 0.93760 0.96531 0.92954 0.93205 0.92220 0.92497 0.93663 0.91635 0.90048 0.90810 0.90583 0.87879 0.86106 0.86569 0.87283 0.87127 0.86701 0.86392 0.90358 0.91596 0.89221 0.96132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.35 11.18 55.49 0.62 -24.73 16 2 C 0.00 0.09 4.92 -17.43 -0.09 0.01 16 3 Si 0.90 21.68 29.59 -169.99 -5.03 16.65 16 4 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 5 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 6 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 7 C -0.25 -6.67 9.59 -15.06 -0.14 -6.81 16 8 H 0.07 1.76 7.89 -52.49 -0.41 1.35 16 9 N -0.59 -14.30 2.80 -172.56 -0.48 -14.78 16 10 C 0.15 3.01 6.50 -3.71 -0.02 2.98 16 11 C -0.14 -2.43 5.87 -26.57 -0.16 -2.59 16 12 C -0.09 -1.53 4.43 -26.92 -0.12 -1.65 16 13 C -0.09 -1.65 0.62 -154.05 -0.09 -1.74 16 14 C -0.12 -1.76 6.15 -25.04 -0.15 -1.92 16 15 C 0.10 1.37 6.77 -2.05 -0.01 1.35 16 16 N -0.61 -10.20 3.29 -169.83 -0.56 -10.75 16 17 C 0.54 8.96 5.58 -10.99 -0.06 8.90 16 18 O -0.54 -10.68 14.01 5.55 0.08 -10.60 16 19 C -0.05 -0.58 2.44 -94.47 -0.23 -0.81 16 20 C -0.14 -1.51 6.78 -36.43 -0.25 -1.76 16 21 C -0.11 -1.20 9.58 -38.74 -0.37 -1.58 16 22 C -0.15 -1.84 8.53 -38.65 -0.33 -2.17 16 23 C -0.07 -0.98 7.35 -38.65 -0.28 -1.26 16 24 C -0.10 -1.28 9.09 -38.75 -0.35 -1.64 16 25 C -0.13 -1.52 8.78 -36.43 -0.32 -1.84 16 26 C 0.13 2.48 5.62 -3.14 -0.02 2.46 16 27 C 0.19 4.19 3.61 -3.93 -0.01 4.18 16 28 H 0.25 6.88 8.31 -40.82 -0.34 6.54 16 29 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.05 1.08 7.93 -51.93 -0.41 0.67 16 31 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.06 1.12 6.58 -51.93 -0.34 0.78 16 33 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 34 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.06 0.87 7.84 -51.93 -0.41 0.46 16 36 H 0.08 1.15 7.79 -51.93 -0.40 0.75 16 37 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 38 H 0.08 0.85 5.43 -51.93 -0.28 0.57 16 39 H 0.10 1.13 8.14 -51.93 -0.42 0.71 16 40 H 0.12 0.99 7.83 -52.49 -0.41 0.58 16 41 H 0.12 1.05 8.06 -52.49 -0.42 0.62 16 42 H 0.11 1.32 8.06 -52.49 -0.42 0.90 16 43 H 0.11 1.42 8.06 -52.49 -0.42 1.00 16 44 H 0.12 1.15 8.06 -52.48 -0.42 0.73 16 45 H 0.12 1.15 8.06 -52.49 -0.42 0.72 16 46 H 0.08 1.78 7.63 -51.93 -0.40 1.38 16 47 H 0.07 1.33 6.34 -51.92 -0.33 1.00 16 48 H 0.09 2.25 6.03 -51.93 -0.31 1.94 16 49 H 0.02 0.49 8.09 -51.93 -0.42 0.07 16 LS Contribution 371.21 15.07 5.59 5.59 Total: -1.00 -30.86 371.21 -10.72 -41.57 By element: Atomic # 1 Polarization: 10.84 SS G_CDS: -7.92 Total: 2.93 kcal Atomic # 6 Polarization: -2.86 SS G_CDS: -3.02 Total: -5.87 kcal Atomic # 7 Polarization: -49.84 SS G_CDS: -0.42 Total: -50.27 kcal Atomic # 8 Polarization: -10.68 SS G_CDS: 0.08 Total: -10.60 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.03 Total: 16.65 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -30.86 -10.72 -41.57 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001040224816.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.663 kcal (2) G-P(sol) polarization free energy of solvation -30.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.573 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds