Wall clock time and date at job start Tue Mar 31 2020 16:11:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86794 * 119.99963 * 2 1 4 4 H 1.48496 * 109.47455 * 179.97438 * 3 2 1 5 5 H 1.48505 * 109.47077 * 300.00156 * 3 2 1 6 6 H 1.48503 * 109.47292 * 59.99956 * 3 2 1 7 7 C 1.38814 * 120.00007 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99920 * 197.25697 * 7 2 1 9 9 N 1.36935 * 119.99910 * 17.25740 * 7 2 1 10 10 C 1.46932 * 120.67611 * 207.37793 * 9 7 2 11 11 C 1.53188 * 108.89454 * 233.98589 * 10 9 7 12 12 C 1.53128 * 109.28616 * 304.93365 * 11 10 9 13 13 C 1.52500 * 109.60132 * 60.52100 * 12 11 10 14 14 C 1.54164 * 110.05147 * 178.24385 * 13 12 11 15 15 C 1.55045 * 102.73442 * 219.40881 * 14 13 12 16 16 N 1.48166 * 103.31423 * 36.99001 * 15 14 13 17 17 C 1.34771 * 127.02812 * 140.94338 * 16 15 14 18 18 O 1.21284 * 120.00451 * 180.02562 * 17 16 15 19 19 C 1.50700 * 119.99931 * 0.03741 * 17 16 15 20 20 C 1.50295 * 109.46791 * 300.01215 * 19 17 16 21 21 C 1.32316 * 121.60537 * 303.33798 * 20 19 17 22 22 C 1.45202 * 123.00202 * 1.00387 * 21 20 19 23 23 C 1.32943 * 125.20210 * 319.52857 * 22 21 20 24 24 C 1.45198 * 125.19298 * 0.02939 * 23 22 21 25 25 C 1.32294 * 123.03235 * 40.42741 * 24 23 22 26 26 C 1.47612 * 105.94230 * 320.96898 * 16 15 14 27 27 C 1.47032 * 120.68095 * 27.35543 * 9 7 2 28 28 H 0.96995 * 120.00448 * 359.97438 * 1 2 3 29 29 H 1.09000 * 109.56440 * 114.16587 * 10 9 7 30 30 H 1.08992 * 109.56457 * 353.81331 * 10 9 7 31 31 H 1.08998 * 109.50437 * 184.99006 * 11 10 9 32 32 H 1.09003 * 109.50120 * 64.87293 * 11 10 9 33 33 H 1.08996 * 109.44881 * 300.47924 * 12 11 10 34 34 H 1.08999 * 109.42522 * 180.54347 * 12 11 10 35 35 H 1.09004 * 110.75584 * 337.71850 * 14 13 12 36 36 H 1.08995 * 110.75635 * 101.09809 * 14 13 12 37 37 H 1.08996 * 110.64631 * 278.53295 * 15 14 13 38 38 H 1.08997 * 110.79262 * 155.50990 * 15 14 13 39 39 H 1.09003 * 109.46746 * 60.00214 * 19 17 16 40 40 H 1.07997 * 119.20418 * 123.31722 * 20 19 17 41 41 H 1.07993 * 118.50534 * 180.97257 * 21 20 19 42 42 H 1.07999 * 117.39656 * 139.56191 * 22 21 20 43 43 H 1.07992 * 117.40071 * 180.02562 * 23 22 21 44 44 H 1.08009 * 118.48340 * 220.45256 * 24 23 22 45 45 H 1.07993 * 119.20813 * 179.00008 * 25 24 23 46 46 H 1.08996 * 109.97895 * 266.00718 * 26 16 15 47 47 H 1.09010 * 109.96924 * 144.74338 * 26 16 15 48 48 H 1.09007 * 109.58387 * 7.45100 * 27 9 7 49 49 H 1.09003 * 109.58226 * 247.03913 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8914 2.3964 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0538 -1.2231 0.2780 9 7 1.3718 -2.3615 -0.3508 10 6 1.8230 -3.6558 0.1786 11 6 2.0819 -4.6079 -0.9931 12 6 0.8224 -4.6982 -1.8593 13 6 0.4776 -3.3171 -2.4063 14 6 -0.7641 -3.4037 -3.3159 15 6 -0.4103 -2.4314 -4.4706 16 7 1.0441 -2.6411 -4.6598 17 6 1.7134 -2.6786 -5.8290 18 8 2.9126 -2.8601 -5.8358 19 6 0.9719 -2.4948 -7.1279 20 6 -0.0664 -3.5723 -7.2688 21 6 0.2551 -4.8551 -7.2246 22 6 1.6140 -5.3231 -7.0180 23 6 2.7010 -4.7851 -7.5624 24 6 2.7107 -3.6392 -8.4541 25 6 1.9405 -2.5788 -8.2740 26 6 1.6102 -2.8012 -3.3059 27 6 0.2206 -2.3366 -1.2650 28 1 -0.4850 0.8400 0.0004 29 1 1.0520 -4.0743 0.8256 30 1 2.7428 -3.5172 0.7466 31 1 2.3316 -5.5973 -0.6097 32 1 2.9098 -4.2299 -1.5930 33 1 -0.0071 -5.0672 -1.2562 34 1 1.0010 -5.3828 -2.6885 35 1 -0.8974 -4.4181 -3.6921 36 1 -1.6551 -3.0667 -2.7863 37 1 -0.6158 -1.4007 -4.1817 38 1 -0.9572 -2.6917 -5.3768 39 1 0.4859 -1.5191 -7.1339 40 1 -1.1001 -3.2929 -7.4093 41 1 -0.5290 -5.5874 -7.3473 42 1 1.7527 -6.1766 -6.3709 43 1 3.6524 -5.2363 -7.3223 44 1 3.3773 -3.6535 -9.3039 45 1 2.0098 -1.7534 -8.9669 46 1 1.9706 -1.8410 -2.9371 47 1 2.4271 -3.5227 -3.3268 48 1 0.0957 -1.3315 -1.6680 49 1 -0.6802 -2.6309 -0.7263 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001040224816.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:11:21 Heat of formation + Delta-G solvation = 30.955672 kcal Electronic energy + Delta-G solvation = -29919.034941 eV Core-core repulsion = 26232.950081 eV Total energy + Delta-G solvation = -3686.084860 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 328.189 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.74910 -40.34848 -38.06415 -37.18111 -34.94036 -33.64004 -33.18852 -32.54113 -31.79046 -30.04766 -28.12757 -27.26268 -26.27635 -24.59877 -24.38129 -23.82983 -21.93314 -21.27136 -19.63039 -19.24743 -18.65639 -18.47800 -18.15521 -17.30724 -16.90995 -16.60013 -16.21726 -15.78116 -15.48163 -15.46140 -15.11934 -14.73564 -14.61526 -14.46475 -14.11063 -13.98883 -13.76405 -13.44300 -13.24550 -13.06666 -13.03641 -12.91108 -12.76675 -12.63609 -12.60460 -12.37137 -12.08352 -11.92069 -11.80119 -11.78506 -11.42133 -11.17858 -11.02833 -11.00748 -10.83365 -10.52657 -10.13617 -9.61775 -9.09695 -8.65193 -7.87874 -5.29955 0.35687 1.09334 1.40534 1.44224 1.53024 1.69630 2.15075 2.31756 2.48852 3.25437 3.50582 3.67931 3.80917 3.86942 3.89836 3.94566 4.01974 4.11762 4.22925 4.28169 4.29291 4.34132 4.38795 4.54204 4.55201 4.59570 4.69407 4.77526 4.78075 4.91859 4.96639 4.98977 5.00880 5.06570 5.13556 5.13921 5.18888 5.24388 5.35238 5.36063 5.51286 5.55248 5.60894 5.66871 5.67575 5.78462 5.85713 5.87498 5.95396 6.39935 6.70606 7.16672 7.25212 7.87954 8.38713 9.18049 Molecular weight = 328.19amu Principal moments of inertia in cm(-1) A = 0.015067 B = 0.004224 C = 0.003849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1857.960304 B = 6627.832418 C = 7273.189668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C -0.040 4.040 3 Si 0.951 3.049 4 H -0.276 1.276 5 H -0.290 1.290 6 H -0.288 1.288 7 C -0.258 4.258 8 H 0.056 0.944 9 N -0.609 5.609 10 C 0.141 3.859 11 C -0.129 4.129 12 C -0.087 4.087 13 C -0.085 4.085 14 C -0.113 4.113 15 C 0.099 3.901 16 N -0.615 5.615 17 C 0.532 3.468 18 O -0.578 6.578 19 C -0.045 4.045 20 C -0.138 4.138 21 C -0.116 4.116 22 C -0.151 4.151 23 C -0.096 4.096 24 C -0.117 4.117 25 C -0.135 4.135 26 C 0.142 3.858 27 C 0.201 3.799 28 H 0.250 0.750 29 H 0.019 0.981 30 H 0.045 0.955 31 H 0.080 0.920 32 H 0.042 0.958 33 H 0.068 0.932 34 H 0.065 0.935 35 H 0.092 0.908 36 H 0.087 0.913 37 H 0.062 0.938 38 H 0.116 0.884 39 H 0.124 0.876 40 H 0.158 0.842 41 H 0.143 0.857 42 H 0.107 0.893 43 H 0.100 0.900 44 H 0.131 0.869 45 H 0.142 0.858 46 H 0.030 0.970 47 H 0.050 0.950 48 H 0.056 0.944 49 H 0.003 0.997 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.723 -10.350 -16.976 20.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.236 4.236 3 Si 0.780 3.220 4 H -0.201 1.201 5 H -0.217 1.217 6 H -0.215 1.215 7 C -0.388 4.388 8 H 0.074 0.926 9 N -0.332 5.332 10 C 0.015 3.985 11 C -0.168 4.168 12 C -0.125 4.125 13 C -0.088 4.088 14 C -0.152 4.152 15 C -0.023 4.023 16 N -0.348 5.348 17 C 0.322 3.678 18 O -0.458 6.458 19 C -0.067 4.067 20 C -0.156 4.156 21 C -0.134 4.134 22 C -0.169 4.169 23 C -0.114 4.114 24 C -0.135 4.135 25 C -0.153 4.153 26 C 0.019 3.981 27 C 0.075 3.925 28 H 0.060 0.940 29 H 0.037 0.963 30 H 0.064 0.936 31 H 0.099 0.901 32 H 0.061 0.939 33 H 0.087 0.913 34 H 0.084 0.916 35 H 0.110 0.890 36 H 0.105 0.895 37 H 0.080 0.920 38 H 0.134 0.866 39 H 0.142 0.858 40 H 0.175 0.825 41 H 0.161 0.839 42 H 0.125 0.875 43 H 0.118 0.882 44 H 0.149 0.851 45 H 0.159 0.841 46 H 0.049 0.951 47 H 0.069 0.931 48 H 0.074 0.926 49 H 0.021 0.979 Dipole moment (debyes) X Y Z Total from point charges -4.109 -10.311 -17.029 20.327 hybrid contribution 0.938 1.229 0.721 1.706 sum -3.171 -9.082 -16.307 18.933 Atomic orbital electron populations 1.70138 1.06052 1.25574 1.55444 1.25535 0.95968 1.00559 1.01513 0.85455 0.78559 0.81031 0.76953 1.20064 1.21730 1.21496 1.19410 0.92598 0.86289 1.40524 0.92623 1.44316 1.35668 1.01887 1.51370 1.21036 0.97024 0.86179 0.94231 1.21976 0.97765 0.99395 0.97665 1.21328 0.97697 0.94657 0.98783 1.21633 0.94662 0.96949 0.95537 1.22678 0.96940 1.00455 0.95086 1.22795 0.79624 0.99460 1.00379 1.48950 1.10336 1.70386 1.05083 1.20780 0.86991 0.75335 0.84706 1.90655 1.16523 1.51326 1.87305 1.19320 0.95599 1.02021 0.89710 1.23082 0.99046 0.91979 1.01464 1.21308 0.95557 0.96878 0.99664 1.21190 0.93237 1.02029 1.00482 1.21125 0.97838 0.96067 0.96352 1.21217 0.99237 0.94135 0.98897 1.22992 0.95012 0.98856 0.98418 1.21673 0.96263 0.98951 0.81179 1.20549 0.87374 0.96795 0.87775 0.94043 0.96256 0.93623 0.90109 0.93904 0.91295 0.91608 0.88987 0.89482 0.91987 0.86614 0.85783 0.82493 0.83940 0.87464 0.88197 0.85090 0.84073 0.95150 0.93134 0.92567 0.97862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.39 11.18 21.65 0.24 -53.14 16 2 C -0.04 -2.22 4.92 84.86 0.42 -1.81 16 3 Si 0.95 45.72 29.59 68.60 2.03 47.75 16 4 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 5 H -0.29 -13.92 7.11 99.48 0.71 -13.21 16 6 H -0.29 -13.67 7.11 99.48 0.71 -12.97 16 7 C -0.26 -14.37 9.59 84.03 0.81 -13.56 16 8 H 0.06 3.13 7.89 -2.91 -0.02 3.11 16 9 N -0.61 -30.33 2.80 -699.87 -1.96 -32.29 16 10 C 0.14 5.87 6.50 86.36 0.56 6.43 16 11 C -0.13 -4.41 5.87 30.70 0.18 -4.23 16 12 C -0.09 -2.71 4.43 30.47 0.13 -2.58 16 13 C -0.09 -2.98 0.62 -51.88 -0.03 -3.02 16 14 C -0.11 -2.98 6.15 31.69 0.19 -2.79 16 15 C 0.10 2.53 6.77 86.76 0.59 3.12 16 16 N -0.62 -19.86 3.29 -809.60 -2.66 -22.52 16 17 C 0.53 17.13 5.58 87.66 0.49 17.61 16 18 O -0.58 -23.21 14.01 -3.04 -0.04 -23.25 16 19 C -0.05 -1.02 2.44 -13.29 -0.03 -1.05 16 20 C -0.14 -2.36 6.78 24.48 0.17 -2.19 16 21 C -0.12 -2.16 9.58 22.98 0.22 -1.94 16 22 C -0.15 -3.60 8.53 22.89 0.20 -3.40 16 23 C -0.10 -2.49 7.35 22.89 0.17 -2.32 16 24 C -0.12 -2.75 9.09 22.99 0.21 -2.54 16 25 C -0.13 -2.96 8.78 24.49 0.21 -2.74 16 26 C 0.14 5.55 5.62 86.36 0.49 6.04 16 27 C 0.20 9.14 3.61 86.16 0.31 9.45 16 28 H 0.25 13.96 8.31 -92.71 -0.77 13.19 16 29 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 30 H 0.05 1.92 7.93 -2.39 -0.02 1.90 16 31 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 32 H 0.04 1.61 6.58 -2.39 -0.02 1.59 16 33 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 34 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 35 H 0.09 2.01 7.84 -2.38 -0.02 1.99 16 36 H 0.09 2.25 7.79 -2.39 -0.02 2.23 16 37 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 38 H 0.12 2.04 5.43 -2.39 -0.01 2.03 16 39 H 0.12 2.26 8.14 -2.39 -0.02 2.25 16 40 H 0.16 1.59 7.83 -2.91 -0.02 1.57 16 41 H 0.14 1.90 8.06 -2.91 -0.02 1.87 16 42 H 0.11 2.48 8.06 -2.91 -0.02 2.46 16 43 H 0.10 2.67 8.06 -2.91 -0.02 2.65 16 44 H 0.13 2.49 8.06 -2.91 -0.02 2.46 16 45 H 0.14 2.35 8.06 -2.91 -0.02 2.33 16 46 H 0.03 1.46 7.63 -2.39 -0.02 1.44 16 47 H 0.05 2.10 6.34 -2.38 -0.02 2.08 16 48 H 0.06 2.93 6.03 -2.38 -0.01 2.92 16 49 H 0.00 0.16 8.09 -2.39 -0.02 0.14 16 Total: -1.00 -70.48 371.21 3.80 -66.68 By element: Atomic # 1 Polarization: 17.37 SS G_CDS: 0.92 Total: 18.28 kcal Atomic # 6 Polarization: -6.79 SS G_CDS: 5.28 Total: -1.51 kcal Atomic # 7 Polarization: -103.57 SS G_CDS: -4.38 Total: -107.96 kcal Atomic # 8 Polarization: -23.21 SS G_CDS: -0.04 Total: -23.25 kcal Atomic # 14 Polarization: 45.72 SS G_CDS: 2.03 Total: 47.75 kcal Total: -70.48 3.80 -66.68 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001040224816.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.635 kcal (2) G-P(sol) polarization free energy of solvation -70.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.680 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds