Wall clock time and date at job start Tue Mar 31 2020 16:11:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86800 * 120.00006 * 2 1 4 4 H 1.48497 * 109.47262 * 240.00239 * 3 2 1 5 5 H 1.48502 * 109.47362 * 0.02562 * 3 2 1 6 6 H 1.48494 * 109.47174 * 120.00263 * 3 2 1 7 7 C 1.38807 * 119.99955 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99980 * 197.31798 * 7 2 1 9 9 N 1.36932 * 120.00111 * 17.31557 * 7 2 1 10 10 C 1.47202 * 120.85975 * 27.61019 * 9 7 2 11 11 C 1.53188 * 108.97061 * 125.92768 * 10 9 7 12 12 C 1.53128 * 109.28768 * 55.08981 * 11 10 9 13 13 C 1.52497 * 109.60172 * 299.48391 * 12 11 10 14 14 C 1.54159 * 110.05695 * 181.74314 * 13 12 11 15 15 C 1.55037 * 102.73510 * 97.46801 * 14 13 12 16 16 N 1.48158 * 103.31395 * 36.99466 * 15 14 13 17 17 C 1.34781 * 127.02796 * 140.95582 * 16 15 14 18 18 O 1.21284 * 120.00050 * 180.02562 * 17 16 15 19 19 C 1.50699 * 119.99807 * 0.02562 * 17 16 15 20 20 C 1.50288 * 109.47042 * 300.01121 * 19 17 16 21 21 C 1.32311 * 121.60942 * 303.33376 * 20 19 17 22 22 C 1.45201 * 123.00295 * 1.00974 * 21 20 19 23 23 C 1.32940 * 125.19805 * 319.53163 * 22 21 20 24 24 C 1.45205 * 125.19671 * 0.02562 * 23 22 21 25 25 C 1.32289 * 123.02053 * 40.43870 * 24 23 22 26 26 C 1.47608 * 105.94845 * 320.97453 * 16 15 14 27 27 C 1.47032 * 120.68288 * 207.47016 * 9 7 2 28 28 H 0.97002 * 120.00122 * 359.97438 * 1 2 3 29 29 H 1.08996 * 109.51212 * 6.09045 * 10 9 7 30 30 H 1.08996 * 109.64250 * 245.84504 * 10 9 7 31 31 H 1.08994 * 109.50491 * 295.14469 * 11 10 9 32 32 H 1.09005 * 109.53181 * 175.04585 * 11 10 9 33 33 H 1.08996 * 109.44940 * 179.44288 * 12 11 10 34 34 H 1.08995 * 109.42926 * 59.50652 * 12 11 10 35 35 H 1.08999 * 110.76497 * 215.78655 * 14 13 12 36 36 H 1.09005 * 110.75733 * 339.16003 * 14 13 12 37 37 H 1.09004 * 110.65580 * 278.54022 * 15 14 13 38 38 H 1.09008 * 110.79139 * 155.51707 * 15 14 13 39 39 H 1.09000 * 109.46685 * 60.00328 * 19 17 16 40 40 H 1.08002 * 119.20142 * 123.31504 * 20 19 17 41 41 H 1.08003 * 118.51114 * 180.96620 * 21 20 19 42 42 H 1.08001 * 117.40601 * 139.54838 * 22 21 20 43 43 H 1.08001 * 117.40229 * 180.02562 * 23 22 21 44 44 H 1.07997 * 118.48702 * 220.45977 * 24 23 22 45 45 H 1.08009 * 119.19972 * 179.04366 * 25 24 23 46 46 H 1.09003 * 109.97522 * 266.00236 * 26 16 15 47 47 H 1.08997 * 109.97438 * 144.72567 * 26 16 15 48 48 H 1.09001 * 109.58646 * 112.98905 * 27 9 7 49 49 H 1.09005 * 109.58168 * 352.72169 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2852 2.7465 0.0006 6 1 3.1039 1.6964 1.2124 7 6 2.0102 -1.2021 -0.0005 8 1 3.0535 -1.2234 0.2779 9 7 1.3721 -2.3610 -0.3540 10 6 0.2235 -2.3399 -1.2743 11 6 0.4979 -3.3010 -2.4353 12 6 0.8168 -4.6907 -1.8769 13 6 2.0550 -4.6140 -0.9901 14 6 2.4112 -6.0159 -0.4570 15 6 3.5155 -6.4846 -1.4392 16 7 4.2764 -5.2435 -1.7145 17 6 5.6121 -5.1233 -1.8489 18 8 6.1037 -4.0377 -2.0744 19 6 6.4947 -6.3379 -1.7191 20 6 6.3198 -6.9406 -0.3535 21 6 6.5256 -6.2358 0.7471 22 6 6.9111 -4.8360 0.7294 23 6 7.7834 -4.2920 -0.1135 24 6 8.4959 -5.0068 -1.1575 25 6 7.9301 -5.9361 -1.9100 26 6 3.2728 -4.1654 -1.8110 27 6 1.8217 -3.6567 0.1758 28 1 -0.4850 0.8401 0.0004 29 1 0.0853 -1.3303 -1.6611 30 1 -0.6760 -2.6543 -0.7450 31 1 1.3465 -2.9383 -3.0151 32 1 -0.3822 -3.3594 -3.0758 33 1 1.0028 -5.3791 -2.7012 34 1 -0.0288 -5.0481 -1.2893 35 1 2.7989 -5.9557 0.5599 36 1 1.5466 -6.6780 -0.5034 37 1 3.0739 -6.8760 -2.3558 38 1 4.1562 -7.2329 -0.9726 39 1 6.2185 -7.0704 -2.4776 40 1 6.0183 -7.9742 -0.2684 41 1 6.4006 -6.7236 1.7026 42 1 6.4530 -4.1849 1.4592 43 1 7.9776 -3.2343 -0.0139 44 1 9.5356 -4.7691 -1.3272 45 1 8.5142 -6.4184 -2.6800 46 1 2.9857 -4.0161 -2.8519 47 1 3.6787 -3.2410 -1.4001 48 1 1.0580 -4.0658 0.8373 49 1 2.7508 -3.5223 0.7298 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001040224822.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:11:26 Heat of formation + Delta-G solvation = 48.049700 kcal Electronic energy + Delta-G solvation = -29814.006841 eV Core-core repulsion = 26128.663234 eV Total energy + Delta-G solvation = -3685.343607 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 328.189 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -40.58328 -39.08218 -36.87999 -35.72196 -33.21792 -32.36472 -32.23431 -30.88874 -30.45921 -28.77076 -26.96295 -25.33225 -24.98616 -23.61831 -23.10568 -22.08884 -20.47599 -20.21523 -18.31439 -17.95623 -17.53100 -17.23933 -16.58689 -16.11707 -15.66379 -15.09898 -14.78831 -14.50523 -14.20738 -14.00799 -13.70561 -13.56987 -13.18807 -12.88120 -12.78414 -12.53322 -12.45660 -12.21828 -12.12697 -11.93371 -11.81886 -11.61474 -11.12863 -11.06975 -10.92378 -10.81549 -10.59177 -10.41819 -10.23948 -10.18595 -10.11702 -9.84915 -9.70344 -9.46333 -9.37056 -9.22467 -8.43428 -8.36483 -8.12202 -6.63170 -5.74674 -3.16194 1.26394 1.98280 2.85655 3.21701 3.34942 3.42920 3.47815 3.51658 4.52552 4.59576 4.69682 4.84531 4.87562 4.89239 5.06901 5.10739 5.14859 5.18656 5.40482 5.41131 5.47242 5.51335 5.58987 5.59109 5.70705 5.81634 5.91160 5.97267 5.99335 6.04057 6.09670 6.21267 6.29199 6.40684 6.42249 6.47254 6.54779 6.58936 6.68484 6.71391 6.73855 6.82198 6.83924 6.88984 6.93146 6.95634 7.41718 7.70231 7.84507 7.86662 8.47727 8.48440 9.25212 9.88403 10.45182 11.33686 Molecular weight = 328.19amu Principal moments of inertia in cm(-1) A = 0.013307 B = 0.004467 C = 0.003724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2103.582518 B = 6267.377897 C = 7517.219270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.004 3.996 3 Si 0.899 3.101 4 H -0.283 1.283 5 H -0.291 1.291 6 H -0.283 1.283 7 C -0.248 4.248 8 H 0.064 0.936 9 N -0.589 5.589 10 C 0.169 3.831 11 C -0.146 4.146 12 C -0.093 4.093 13 C -0.083 4.083 14 C -0.124 4.124 15 C 0.098 3.902 16 N -0.616 5.616 17 C 0.538 3.462 18 O -0.529 6.529 19 C -0.042 4.042 20 C -0.149 4.149 21 C -0.102 4.102 22 C -0.145 4.145 23 C -0.076 4.076 24 C -0.099 4.099 25 C -0.132 4.132 26 C 0.128 3.872 27 C 0.163 3.837 28 H 0.253 0.747 29 H 0.087 0.913 30 H 0.017 0.983 31 H 0.055 0.945 32 H 0.049 0.951 33 H 0.045 0.955 34 H 0.058 0.942 35 H 0.073 0.927 36 H 0.077 0.923 37 H 0.066 0.934 38 H 0.078 0.922 39 H 0.101 0.899 40 H 0.120 0.880 41 H 0.117 0.883 42 H 0.113 0.887 43 H 0.113 0.887 44 H 0.115 0.885 45 H 0.118 0.882 46 H 0.059 0.941 47 H 0.086 0.914 48 H 0.019 0.981 49 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.921 -18.062 -2.592 20.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.194 4.194 3 Si 0.729 3.271 4 H -0.210 1.210 5 H -0.217 1.217 6 H -0.209 1.209 7 C -0.378 4.378 8 H 0.081 0.919 9 N -0.311 5.311 10 C 0.044 3.956 11 C -0.185 4.185 12 C -0.131 4.131 13 C -0.086 4.086 14 C -0.162 4.162 15 C -0.025 4.025 16 N -0.350 5.350 17 C 0.325 3.675 18 O -0.405 6.405 19 C -0.063 4.063 20 C -0.167 4.167 21 C -0.120 4.120 22 C -0.163 4.163 23 C -0.094 4.094 24 C -0.117 4.117 25 C -0.151 4.151 26 C 0.006 3.994 27 C 0.036 3.964 28 H 0.063 0.937 29 H 0.105 0.895 30 H 0.035 0.965 31 H 0.074 0.926 32 H 0.067 0.933 33 H 0.064 0.936 34 H 0.076 0.924 35 H 0.091 0.909 36 H 0.095 0.905 37 H 0.085 0.915 38 H 0.097 0.903 39 H 0.119 0.881 40 H 0.138 0.862 41 H 0.135 0.865 42 H 0.131 0.869 43 H 0.131 0.869 44 H 0.133 0.867 45 H 0.135 0.865 46 H 0.077 0.923 47 H 0.105 0.895 48 H 0.037 0.963 49 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 10.176 -17.261 -2.709 20.220 hybrid contribution 0.277 0.822 -0.011 0.867 sum 10.453 -16.439 -2.720 19.670 Atomic orbital electron populations 1.70023 1.05199 1.25494 1.54033 1.24974 0.95221 0.98256 1.00992 0.86421 0.78964 0.83508 0.78235 1.20994 1.21659 1.20947 1.19101 0.92548 0.84828 1.41303 0.91878 1.44094 1.35558 1.01058 1.50391 1.20814 0.88430 0.98518 0.87863 1.22248 1.00123 0.96110 1.00067 1.21381 0.96375 0.97601 0.97696 1.21603 0.94362 0.94836 0.97795 1.22719 0.97849 0.96709 0.98960 1.22616 0.93597 0.87646 0.98652 1.48842 1.05012 1.10485 1.70651 1.19970 0.80705 0.90197 0.76587 1.90715 1.73034 1.28237 1.48502 1.19151 0.93532 0.96347 0.97273 1.22802 1.02226 0.99873 0.91823 1.21107 0.98667 0.93979 0.98205 1.21030 0.98930 0.94670 1.01639 1.21040 0.95696 0.99171 0.93533 1.21017 0.99174 0.95518 0.95997 1.22666 0.94534 0.98160 0.99717 1.22058 0.86830 0.91035 0.99443 1.20836 0.97520 0.86517 0.91532 0.93682 0.89517 0.96519 0.92606 0.93259 0.93599 0.92375 0.90865 0.90457 0.91537 0.90338 0.88101 0.86192 0.86488 0.86890 0.86906 0.86679 0.86456 0.92283 0.89519 0.96333 0.92967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.30 11.18 55.49 0.62 -25.68 16 2 C 0.00 0.11 4.92 -17.43 -0.09 0.03 16 3 Si 0.90 22.32 29.59 -169.99 -5.03 17.29 16 4 H -0.28 -7.08 7.11 56.52 0.40 -6.67 16 5 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 6 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 7 C -0.25 -6.87 9.60 -15.06 -0.14 -7.01 16 8 H 0.06 1.76 7.89 -52.49 -0.41 1.35 16 9 N -0.59 -14.53 2.78 -172.35 -0.48 -15.01 16 10 C 0.17 3.99 5.33 -3.56 -0.02 3.97 16 11 C -0.15 -2.74 5.87 -26.57 -0.16 -2.90 16 12 C -0.09 -1.47 4.40 -26.92 -0.12 -1.59 16 13 C -0.08 -1.36 0.62 -154.05 -0.09 -1.46 16 14 C -0.12 -1.55 6.15 -25.05 -0.15 -1.70 16 15 C 0.10 1.11 6.77 -2.05 -0.01 1.10 16 16 N -0.62 -9.31 3.29 -169.83 -0.56 -9.86 16 17 C 0.54 8.50 5.58 -10.98 -0.06 8.44 16 18 O -0.53 -10.45 14.01 5.55 0.08 -10.38 16 19 C -0.04 -0.49 2.44 -94.49 -0.23 -0.72 16 20 C -0.15 -1.52 6.78 -36.43 -0.25 -1.77 16 21 C -0.10 -1.15 9.58 -38.75 -0.37 -1.52 16 22 C -0.14 -1.97 8.53 -38.65 -0.33 -2.30 16 23 C -0.08 -1.07 7.35 -38.65 -0.28 -1.35 16 24 C -0.10 -1.24 9.09 -38.74 -0.35 -1.59 16 25 C -0.13 -1.54 8.77 -36.44 -0.32 -1.86 16 26 C 0.13 2.29 5.57 -3.14 -0.02 2.27 16 27 C 0.16 3.34 4.81 -3.93 -0.02 3.32 16 28 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 29 H 0.09 2.32 6.02 -51.93 -0.31 2.01 16 30 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.06 1.10 6.65 -51.93 -0.35 0.75 16 32 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 34 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 35 H 0.07 0.94 7.84 -51.93 -0.41 0.53 16 36 H 0.08 0.83 7.83 -51.93 -0.41 0.43 16 37 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.08 0.73 5.43 -51.92 -0.28 0.44 16 39 H 0.10 0.95 8.14 -51.93 -0.42 0.52 16 40 H 0.12 0.89 7.83 -52.49 -0.41 0.48 16 41 H 0.12 1.09 8.06 -52.48 -0.42 0.67 16 42 H 0.11 1.57 8.06 -52.49 -0.42 1.15 16 43 H 0.11 1.61 8.06 -52.49 -0.42 1.18 16 44 H 0.12 1.18 8.06 -52.49 -0.42 0.76 16 45 H 0.12 1.07 8.06 -52.48 -0.42 0.64 16 46 H 0.06 1.08 6.54 -51.93 -0.34 0.74 16 47 H 0.09 1.92 7.52 -51.93 -0.39 1.53 16 48 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 49 H 0.05 1.11 7.93 -51.93 -0.41 0.70 16 LS Contribution 371.41 15.07 5.60 5.60 Total: -1.00 -31.98 371.41 -10.72 -42.70 By element: Atomic # 1 Polarization: 9.90 SS G_CDS: -7.93 Total: 1.97 kcal Atomic # 6 Polarization: -3.62 SS G_CDS: -3.02 Total: -6.64 kcal Atomic # 7 Polarization: -50.13 SS G_CDS: -0.42 Total: -50.55 kcal Atomic # 8 Polarization: -10.45 SS G_CDS: 0.08 Total: -10.38 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -5.03 Total: 17.29 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -31.98 -10.72 -42.70 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001040224822.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.754 kcal (2) G-P(sol) polarization free energy of solvation -31.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.704 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds