Wall clock time and date at job start Tue Mar 31 2020 14:53:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 F 1.39908 * 109.46763 * 2 1 4 4 F 1.39904 * 109.47222 * 240.00453 * 2 1 3 5 5 C 1.52993 * 109.47235 * 120.00064 * 2 1 3 6 6 C 1.50702 * 115.55015 * 303.92327 * 5 2 1 7 7 O 1.21280 * 119.99666 * 104.52011 * 6 5 2 8 8 N 1.34771 * 120.00146 * 284.52677 * 6 5 2 9 9 C 1.47156 * 121.21665 * 354.62479 * 8 6 5 10 10 C 1.52840 * 107.97853 * 122.74189 * 9 8 6 11 11 C 1.53096 * 110.57512 * 57.34739 * 10 9 8 12 12 H 1.08994 * 112.49262 * 70.55016 * 11 10 9 13 13 C 1.56030 * 106.38648 * 195.42922 * 11 10 9 14 14 C 1.54504 * 102.61094 * 78.37004 * 13 11 10 15 15 N 1.47439 * 107.14748 * 22.85096 * 14 13 11 16 16 C 1.36941 * 126.05747 * 181.65140 * 15 14 13 17 17 H 1.07996 * 119.99274 * 185.14067 * 16 15 14 18 18 C 1.38810 * 119.99966 * 5.14357 * 16 15 14 19 19 N 1.31614 * 120.00063 * 5.61986 * 18 16 15 20 20 Si 1.86801 * 119.99622 * 185.61840 * 18 16 15 21 21 H 1.48502 * 109.46808 * 94.99943 * 20 18 16 22 22 H 1.48499 * 109.47022 * 214.99472 * 20 18 16 23 23 H 1.48498 * 109.47458 * 334.99697 * 20 18 16 24 24 C 1.46463 * 107.88152 * 1.62002 * 15 14 13 25 25 H 1.08998 * 108.42908 * 89.89073 * 24 15 14 26 26 C 1.45678 * 120.97936 * 174.20286 * 8 6 5 27 27 C 1.53003 * 117.49875 * 89.59482 * 5 2 1 28 28 C 1.53001 * 117.50128 * 158.25803 * 5 2 1 29 29 H 1.08993 * 109.47331 * 295.67466 * 1 2 3 30 30 H 1.09008 * 109.47498 * 55.67305 * 1 2 3 31 31 H 1.08997 * 109.47199 * 175.67196 * 1 2 3 32 32 H 1.08999 * 109.75932 * 3.12123 * 9 8 6 33 33 H 1.08999 * 109.75910 * 242.36272 * 9 8 6 34 34 H 1.08996 * 109.25362 * 297.06542 * 10 9 8 35 35 H 1.08995 * 109.24927 * 177.63005 * 10 9 8 36 36 H 1.08992 * 110.78086 * 196.65118 * 13 11 10 37 37 H 1.08993 * 110.78006 * 319.90413 * 13 11 10 38 38 H 1.09001 * 109.90364 * 142.23169 * 14 13 11 39 39 H 1.09003 * 109.90161 * 263.47640 * 14 13 11 40 40 H 0.97001 * 120.00044 * 180.02562 * 19 18 16 41 41 H 1.09001 * 108.23160 * 112.08797 * 26 8 6 42 42 H 1.09000 * 109.61513 * 353.08535 * 26 8 6 43 43 H 1.09000 * 117.49550 * 215.00340 * 27 5 2 44 44 H 1.08991 * 117.49925 * 0.02562 * 27 5 2 45 45 H 1.09004 * 117.49334 * 359.97115 * 28 5 2 46 46 H 1.08996 * 117.50186 * 144.97236 * 28 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 9 1.9963 1.3191 0.0000 4 9 1.9964 -0.6594 -1.1424 5 6 2.0400 -0.7212 1.2492 6 6 1.5413 -0.1770 2.5630 7 8 0.6841 -0.7732 3.1801 8 7 2.0477 0.9721 3.0523 9 6 3.1682 1.6559 2.3872 10 6 2.7179 3.0756 2.0444 11 6 2.2667 3.8164 3.3060 12 1 3.0987 4.0596 3.9667 13 6 1.4708 5.0676 2.8208 14 6 0.0976 4.4683 2.4432 15 7 -0.0456 3.2053 3.1902 16 6 -1.1064 2.3422 3.1184 17 1 -1.1490 1.4835 3.7718 18 6 -2.1269 2.5713 2.2056 19 7 -2.0230 3.5526 1.3348 20 14 -3.6476 1.4864 2.2134 21 1 -4.7106 2.1302 3.0264 22 1 -4.1318 1.3029 0.8216 23 1 -3.3095 0.1641 2.7983 24 6 1.1481 3.0368 4.0220 25 1 0.9643 3.5075 4.9878 26 6 1.4958 1.5831 4.2541 27 6 2.2664 -2.2312 1.1502 28 6 3.4640 -1.2795 1.2107 29 1 -0.3633 0.4452 0.9261 30 1 -0.3634 0.5795 -0.8487 31 1 -0.3633 -1.0247 -0.0776 32 1 3.4353 1.1234 1.4744 33 1 4.0270 1.6934 3.0574 34 1 1.8884 3.0291 1.3388 35 1 3.5475 3.6154 1.5879 36 1 1.3670 5.7957 3.6252 37 1 1.9510 5.5187 1.9525 38 1 -0.6982 5.1580 2.7244 39 1 0.0605 4.2720 1.3717 40 1 -2.7363 3.7129 0.6973 41 1 2.2425 1.5145 5.0452 42 1 0.5992 1.0440 4.5600 43 1 2.0547 -2.8309 2.0354 44 1 2.0525 -2.7106 0.1950 45 1 4.0373 -1.1334 0.2952 46 1 4.0402 -1.2529 2.1356 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001042238719.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:53:11 Heat of formation + Delta-G solvation = -70.367882 kcal Electronic energy + Delta-G solvation = -32275.729066 eV Core-core repulsion = 28031.020957 eV Total energy + Delta-G solvation = -4244.708109 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 328.170 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -48.80380 -46.77158 -40.22230 -38.50203 -36.34481 -34.98201 -32.83709 -31.15368 -30.95432 -29.20099 -28.37254 -25.30842 -24.57692 -23.66440 -22.81691 -22.28456 -21.86372 -19.96892 -19.12067 -18.44635 -17.44360 -17.15270 -16.53047 -16.13091 -15.78030 -15.39062 -14.88957 -14.44483 -14.40894 -14.23375 -13.90475 -13.67713 -13.53336 -13.12336 -12.94158 -12.76621 -12.69443 -12.38108 -12.00391 -11.97493 -11.86281 -11.69954 -11.55736 -11.48497 -11.35543 -11.20516 -10.81369 -10.74561 -10.69683 -10.61276 -10.19997 -10.08823 -9.83007 -9.77926 -9.63682 -9.51472 -9.30634 -8.55662 -8.10731 -6.75523 -5.63781 -2.98210 2.77460 3.27984 3.42595 3.48470 3.49992 3.54369 3.87382 4.32732 4.50083 4.54623 4.56561 4.61739 5.09156 5.14922 5.20156 5.22895 5.40843 5.43471 5.48218 5.53481 5.60095 5.73235 5.73328 5.79646 5.90007 5.95476 5.95562 6.02944 6.05526 6.09804 6.21922 6.31695 6.33465 6.47217 6.58522 6.61503 6.65594 6.78774 7.07386 7.13105 7.55839 7.72953 7.85596 7.89914 8.30850 8.58475 9.27452 9.88696 10.55160 11.45666 Molecular weight = 328.17amu Principal moments of inertia in cm(-1) A = 0.011303 B = 0.007631 C = 0.006003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2476.671829 B = 3668.447088 C = 4663.256232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.337 3.663 3 F -0.182 7.182 4 F -0.202 7.202 5 C -0.207 4.207 6 C 0.566 3.434 7 O -0.526 6.526 8 N -0.580 5.580 9 C 0.107 3.893 10 C -0.125 4.125 11 C -0.102 4.102 12 H 0.073 0.927 13 C -0.142 4.142 14 C 0.174 3.826 15 N -0.587 5.587 16 C -0.214 4.214 17 H 0.078 0.922 18 C -0.004 4.004 19 N -0.918 5.918 20 Si 0.893 3.107 21 H -0.291 1.291 22 H -0.292 1.292 23 H -0.277 1.277 24 C 0.153 3.847 25 H 0.028 0.972 26 C 0.114 3.886 27 C -0.127 4.127 28 C -0.153 4.153 29 H 0.110 0.890 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.085 0.915 33 H 0.059 0.941 34 H 0.093 0.907 35 H 0.058 0.942 36 H 0.051 0.949 37 H 0.058 0.942 38 H 0.028 0.972 39 H 0.061 0.939 40 H 0.249 0.751 41 H 0.051 0.949 42 H 0.095 0.905 43 H 0.111 0.889 44 H 0.110 0.890 45 H 0.109 0.891 46 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.490 -5.261 -0.916 14.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.249 4.249 2 C 0.300 3.700 3 F -0.163 7.163 4 F -0.183 7.183 5 C -0.211 4.211 6 C 0.351 3.649 7 O -0.402 6.402 8 N -0.311 5.311 9 C -0.016 4.016 10 C -0.163 4.163 11 C -0.121 4.121 12 H 0.091 0.909 13 C -0.180 4.180 14 C 0.049 3.951 15 N -0.312 5.312 16 C -0.342 4.342 17 H 0.096 0.904 18 C -0.200 4.200 19 N -0.566 5.566 20 Si 0.724 3.276 21 H -0.218 1.218 22 H -0.218 1.218 23 H -0.202 1.202 24 C 0.045 3.955 25 H 0.045 0.955 26 C -0.009 4.009 27 C -0.164 4.164 28 C -0.190 4.190 29 H 0.129 0.871 30 H 0.100 0.900 31 H 0.099 0.901 32 H 0.103 0.897 33 H 0.077 0.923 34 H 0.111 0.889 35 H 0.076 0.924 36 H 0.070 0.930 37 H 0.077 0.923 38 H 0.046 0.954 39 H 0.079 0.921 40 H 0.060 0.940 41 H 0.069 0.931 42 H 0.113 0.887 43 H 0.129 0.871 44 H 0.128 0.872 45 H 0.127 0.873 46 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 12.824 -5.584 -0.733 14.006 hybrid contribution -0.803 -0.190 -0.256 0.864 sum 12.021 -5.774 -0.989 13.372 Atomic orbital electron populations 1.22756 0.89908 1.04676 1.07551 1.20022 0.94360 0.75099 0.80505 1.93029 1.90211 1.36584 1.96437 1.92964 1.90786 1.81234 1.53328 1.22370 1.03661 0.99891 0.95211 1.18637 0.81262 0.80846 0.84134 1.90692 1.31122 1.58737 1.59668 1.47421 1.33631 1.22224 1.27829 1.21821 0.87991 0.94363 0.97383 1.21897 1.01982 0.93763 0.98618 1.22385 0.96727 0.96529 0.96501 0.90867 1.23124 0.98923 0.96327 0.99657 1.21275 0.90191 0.86381 0.97205 1.44289 1.16163 1.22007 1.48770 1.18978 0.96018 1.03981 1.15219 0.90382 1.24667 0.98708 0.98722 0.97920 1.69947 1.32849 1.32309 1.21480 0.86356 0.83871 0.80494 0.76921 1.21815 1.21817 1.20205 1.20748 0.88171 0.92065 0.94529 0.95494 1.21251 0.99164 0.95534 0.84996 1.23057 0.99524 0.88986 1.04854 1.23171 0.89322 1.02017 1.04528 0.87087 0.89983 0.90053 0.89677 0.92258 0.88890 0.92375 0.92975 0.92285 0.95379 0.92126 0.94041 0.93072 0.88665 0.87089 0.87186 0.87304 0.87564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.54 9.23 37.16 0.34 -3.19 16 2 C 0.34 5.61 2.09 -26.74 -0.06 5.55 16 3 F -0.18 -3.27 12.23 2.25 0.03 -3.25 16 4 F -0.20 -3.10 15.64 2.25 0.04 -3.06 16 5 C -0.21 -3.18 0.83 -155.66 -0.13 -3.31 16 6 C 0.57 10.53 5.76 -10.99 -0.06 10.47 16 7 O -0.53 -11.58 16.40 5.56 0.09 -11.49 16 8 N -0.58 -10.17 2.95 -174.95 -0.52 -10.69 16 9 C 0.11 1.58 5.37 -3.77 -0.02 1.56 16 10 C -0.12 -2.02 4.57 -26.76 -0.12 -2.14 16 11 C -0.10 -1.69 3.68 -88.42 -0.33 -2.01 16 12 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 13 C -0.14 -2.56 6.32 -24.32 -0.15 -2.72 16 14 C 0.17 4.07 4.67 -2.74 -0.01 4.05 16 15 N -0.59 -14.07 3.19 -164.41 -0.52 -14.59 16 16 C -0.21 -5.72 9.63 -15.06 -0.14 -5.87 16 17 H 0.08 2.16 6.57 -52.49 -0.34 1.82 16 18 C 0.00 -0.11 5.46 -17.43 -0.10 -0.21 16 19 N -0.92 -26.15 10.47 55.49 0.58 -25.57 16 20 Si 0.89 22.42 29.56 -169.99 -5.02 17.40 16 21 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 22 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 23 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 24 C 0.15 3.00 3.01 -68.30 -0.21 2.80 16 25 H 0.03 0.55 8.14 -51.93 -0.42 0.12 16 26 C 0.11 2.11 5.55 -5.36 -0.03 2.08 16 27 C -0.13 -1.58 9.54 -26.69 -0.25 -1.84 16 28 C -0.15 -1.77 8.27 -26.69 -0.22 -1.99 16 29 H 0.11 2.51 7.30 -51.93 -0.38 2.13 16 30 H 0.08 1.49 8.14 -51.92 -0.42 1.07 16 31 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 32 H 0.09 1.20 3.99 -51.93 -0.21 0.99 16 33 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.09 1.87 5.26 -51.93 -0.27 1.60 16 35 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 37 H 0.06 0.98 7.98 -51.93 -0.41 0.57 16 38 H 0.03 0.73 7.96 -51.93 -0.41 0.32 16 39 H 0.06 1.59 6.62 -51.93 -0.34 1.25 16 40 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 41 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 42 H 0.10 2.05 5.56 -51.93 -0.29 1.76 16 43 H 0.11 1.38 8.14 -51.93 -0.42 0.96 16 44 H 0.11 1.23 7.67 -51.93 -0.40 0.83 16 45 H 0.11 1.12 7.90 -51.93 -0.41 0.71 16 46 H 0.11 1.10 8.14 -51.93 -0.42 0.68 16 LS Contribution 352.29 15.07 5.31 5.31 Total: -1.00 -30.28 352.29 -8.35 -38.63 By element: Atomic # 1 Polarization: 10.91 SS G_CDS: -6.83 Total: 4.07 kcal Atomic # 6 Polarization: 4.72 SS G_CDS: -1.49 Total: 3.23 kcal Atomic # 7 Polarization: -50.39 SS G_CDS: -0.46 Total: -50.85 kcal Atomic # 8 Polarization: -11.58 SS G_CDS: 0.09 Total: -11.49 kcal Atomic # 9 Polarization: -6.37 SS G_CDS: 0.06 Total: -6.31 kcal Atomic # 14 Polarization: 22.42 SS G_CDS: -5.02 Total: 17.40 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -30.28 -8.35 -38.63 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042238719.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.735 kcal (2) G-P(sol) polarization free energy of solvation -30.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.633 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds