Wall clock time and date at job start Tue Mar 31 2020 14:53:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 F 1.39904 * 109.47083 * 2 1 4 4 F 1.39902 * 109.47035 * 119.99801 * 2 1 3 5 5 C 1.53001 * 109.47231 * 239.99718 * 2 1 3 6 6 C 1.50707 * 115.54858 * 28.14948 * 5 2 1 7 7 O 1.21279 * 119.99638 * 260.12667 * 6 5 2 8 8 N 1.34773 * 120.00035 * 80.12331 * 6 5 2 9 9 C 1.46600 * 119.75080 * 354.77881 * 8 6 5 10 10 C 1.53882 * 110.71216 * 227.71288 * 9 8 6 11 11 C 1.51983 * 107.28830 * 308.19641 * 10 9 8 12 12 H 1.09000 * 111.01338 * 302.66050 * 11 10 9 13 13 C 1.53705 * 115.00380 * 175.44740 * 11 10 9 14 14 C 1.55298 * 101.81531 * 206.53878 * 13 11 10 15 15 N 1.48162 * 107.04136 * 22.44021 * 14 13 11 16 16 C 1.36934 * 126.39440 * 184.99882 * 15 14 13 17 17 H 1.08001 * 119.99953 * 180.02562 * 16 15 14 18 18 C 1.38813 * 120.00313 * 0.03224 * 16 15 14 19 19 N 1.31621 * 119.99751 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 119.99907 * 179.97438 * 18 16 15 21 21 H 1.48496 * 109.47322 * 59.99988 * 20 18 16 22 22 H 1.48501 * 109.46838 * 179.97438 * 20 18 16 23 23 H 1.48501 * 109.46934 * 299.99610 * 20 18 16 24 24 C 1.45502 * 107.20617 * 5.00588 * 15 14 13 25 25 H 1.08998 * 109.57536 * 86.62618 * 24 15 14 26 26 C 1.47794 * 119.75219 * 174.50336 * 8 6 5 27 27 C 1.52998 * 117.49890 * 242.44088 * 5 2 1 28 28 C 1.53001 * 117.49968 * 173.81591 * 5 2 1 29 29 H 1.09002 * 109.46672 * 54.69357 * 1 2 3 30 30 H 1.08995 * 109.46853 * 174.69523 * 1 2 3 31 31 H 1.08993 * 109.46960 * 294.69745 * 1 2 3 32 32 H 1.08994 * 109.22933 * 348.03637 * 9 8 6 33 33 H 1.09003 * 109.22939 * 107.39830 * 9 8 6 34 34 H 1.09006 * 109.89064 * 67.63933 * 10 9 8 35 35 H 1.09001 * 109.89520 * 188.74563 * 10 9 8 36 36 H 1.09008 * 110.95828 * 324.66574 * 13 11 10 37 37 H 1.08996 * 110.96280 * 88.36688 * 13 11 10 38 38 H 1.08993 * 109.92043 * 141.78898 * 14 13 11 39 39 H 1.08999 * 109.91473 * 262.89876 * 14 13 11 40 40 H 0.96996 * 119.99828 * 179.97438 * 19 18 16 41 41 H 1.09003 * 110.06608 * 247.99159 * 26 8 6 42 42 H 1.08999 * 110.06209 * 9.55216 * 26 8 6 43 43 H 1.08996 * 117.49912 * 359.97438 * 27 5 2 44 44 H 1.09005 * 117.49532 * 145.02151 * 27 5 2 45 45 H 1.08995 * 117.49783 * 214.97756 * 28 5 2 46 46 H 1.09004 * 117.49688 * 0.02562 * 28 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 9 1.9964 1.3190 0.0000 4 9 1.9964 -0.6595 1.1423 5 6 2.0401 -0.7213 -1.2492 6 6 1.1264 -0.6721 -2.4467 7 8 0.4173 -1.6207 -2.7078 8 7 1.0974 0.4261 -3.2274 9 6 1.8691 1.6121 -2.8438 10 6 1.0039 2.8806 -2.9449 11 6 0.3820 2.8938 -4.3316 12 1 1.1497 2.8607 -5.1047 13 6 -0.6117 4.0382 -4.5871 14 6 -1.5293 3.4247 -5.6795 15 7 -1.4085 1.9520 -5.5711 16 6 -1.9752 1.0266 -6.4064 17 1 -1.8189 -0.0274 -6.2300 18 6 -2.7503 1.4431 -7.4800 19 7 -2.9410 2.7276 -7.6948 20 14 -3.5227 0.1807 -8.6198 21 1 -4.4312 -0.6988 -7.8413 22 1 -4.2963 0.8776 -9.6786 23 1 -2.4549 -0.6401 -9.2454 24 6 -0.5755 1.6726 -4.4113 25 1 -1.1962 1.6370 -3.5160 26 6 0.2926 0.4237 -4.4670 27 6 2.8675 -1.9916 -1.0431 28 6 3.5476 -0.7029 -1.5096 29 1 -0.3633 0.5940 -0.8387 30 1 -0.3633 -1.0232 -0.0950 31 1 -0.3633 0.4294 0.9336 32 1 2.2185 1.4966 -1.8179 33 1 2.7292 1.7104 -3.5062 34 1 0.2205 2.8565 -2.1873 35 1 1.6256 3.7655 -2.8088 36 1 -1.1796 4.2700 -3.6860 37 1 -0.0985 4.9242 -4.9607 38 1 -2.5627 3.7261 -5.5087 39 1 -1.2043 3.7553 -6.6660 40 1 -3.4823 3.0187 -8.4452 41 1 0.9471 0.4584 -5.3380 42 1 -0.3342 -0.4673 -4.5042 43 1 3.0489 -2.3132 -0.0176 44 1 2.7511 -2.7921 -1.7738 45 1 3.8786 -0.6556 -2.5470 46 1 4.1762 -0.1772 -0.7907 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001042238721.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:53:17 Heat of formation + Delta-G solvation = -70.222931 kcal Electronic energy + Delta-G solvation = -30580.701034 eV Core-core repulsion = 26335.999211 eV Total energy + Delta-G solvation = -4244.701823 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 328.170 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -49.37133 -47.33800 -40.55004 -38.63010 -36.65327 -35.40029 -32.91044 -31.70089 -31.25001 -29.49643 -28.50778 -25.36003 -24.67890 -23.98524 -22.91540 -22.20171 -22.07135 -20.08581 -19.60350 -18.92431 -17.85557 -17.69831 -16.73645 -16.54473 -16.18691 -15.62855 -14.96417 -14.86368 -14.54631 -14.44459 -14.11695 -14.10207 -13.74727 -13.63702 -13.27827 -13.09115 -12.94089 -12.72252 -12.65053 -12.43593 -12.07856 -11.96818 -11.86333 -11.81908 -11.54502 -11.29669 -10.96945 -10.90815 -10.79691 -10.76083 -10.65862 -10.17557 -9.98637 -9.85579 -9.76698 -9.64934 -9.48348 -8.63493 -8.48151 -6.86884 -5.72670 -3.06628 2.39462 2.84791 3.13139 3.41702 3.43333 3.46155 3.47420 3.82824 3.94470 4.24791 4.29148 4.50165 4.62561 4.70026 4.97218 4.98887 5.12111 5.22192 5.25032 5.29561 5.39275 5.45457 5.53137 5.57441 5.63051 5.69420 5.72580 5.73720 5.79086 5.88343 6.02268 6.08715 6.11073 6.18049 6.33609 6.45703 6.55514 6.66656 6.73817 7.03088 7.46543 7.54200 7.59867 7.80179 8.16169 8.22598 9.18029 9.81054 10.47758 11.39512 Molecular weight = 328.17amu Principal moments of inertia in cm(-1) A = 0.018741 B = 0.003883 C = 0.003504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1493.709099 B = 7209.490668 C = 7990.050046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.335 3.665 3 F -0.187 7.187 4 F -0.192 7.192 5 C -0.219 4.219 6 C 0.554 3.446 7 O -0.527 6.527 8 N -0.595 5.595 9 C 0.087 3.913 10 C -0.117 4.117 11 C -0.112 4.112 12 H 0.077 0.923 13 C -0.138 4.138 14 C 0.177 3.823 15 N -0.591 5.591 16 C -0.230 4.230 17 H 0.078 0.922 18 C -0.005 4.005 19 N -0.921 5.921 20 Si 0.910 3.090 21 H -0.285 1.285 22 H -0.290 1.290 23 H -0.285 1.285 24 C 0.158 3.842 25 H 0.024 0.976 26 C 0.114 3.886 27 C -0.125 4.125 28 C -0.146 4.146 29 H 0.092 0.908 30 H 0.096 0.904 31 H 0.086 0.914 32 H 0.099 0.901 33 H 0.063 0.937 34 H 0.066 0.934 35 H 0.073 0.927 36 H 0.055 0.945 37 H 0.059 0.941 38 H 0.037 0.963 39 H 0.056 0.944 40 H 0.253 0.747 41 H 0.072 0.928 42 H 0.093 0.907 43 H 0.115 0.885 44 H 0.112 0.888 45 H 0.110 0.890 46 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.609 -1.900 15.450 20.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.254 4.254 2 C 0.299 3.701 3 F -0.168 7.168 4 F -0.173 7.173 5 C -0.223 4.223 6 C 0.339 3.661 7 O -0.404 6.404 8 N -0.328 5.328 9 C -0.036 4.036 10 C -0.155 4.155 11 C -0.132 4.132 12 H 0.095 0.905 13 C -0.177 4.177 14 C 0.053 3.947 15 N -0.317 5.317 16 C -0.358 4.358 17 H 0.096 0.904 18 C -0.201 4.201 19 N -0.568 5.568 20 Si 0.740 3.260 21 H -0.211 1.211 22 H -0.216 1.216 23 H -0.211 1.211 24 C 0.049 3.951 25 H 0.041 0.959 26 C -0.008 4.008 27 C -0.162 4.162 28 C -0.183 4.183 29 H 0.111 0.889 30 H 0.115 0.885 31 H 0.105 0.895 32 H 0.117 0.883 33 H 0.081 0.919 34 H 0.085 0.915 35 H 0.092 0.908 36 H 0.074 0.926 37 H 0.078 0.922 38 H 0.055 0.945 39 H 0.074 0.926 40 H 0.063 0.937 41 H 0.090 0.910 42 H 0.111 0.889 43 H 0.133 0.867 44 H 0.130 0.870 45 H 0.129 0.871 46 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 13.071 -2.368 15.094 20.107 hybrid contribution -0.367 -0.368 -0.584 0.782 sum 12.704 -2.736 14.510 19.478 Atomic orbital electron populations 1.22823 0.90381 1.06518 1.05654 1.19992 0.93998 0.74712 0.81404 1.92908 1.90618 1.37382 1.95868 1.92998 1.90599 1.80934 1.52783 1.22453 0.96031 1.07737 0.96124 1.18917 0.81978 0.82989 0.82211 1.90726 1.41550 1.36290 1.71785 1.48247 1.47629 1.12928 1.23989 1.22178 0.93919 0.85086 1.02421 1.21764 0.99355 0.96387 0.98001 1.22275 0.97417 0.97870 0.95643 0.90491 1.22733 0.97823 0.96874 1.00224 1.21538 0.96014 0.82056 0.95082 1.44159 1.56193 1.02386 1.28915 1.18984 1.24470 0.87814 1.04523 0.90374 1.24775 1.00343 0.96182 0.98825 1.69932 1.43258 1.12455 1.31190 0.86228 0.79085 0.80252 0.80405 1.21111 1.21605 1.21116 1.21038 0.90488 0.91677 0.91865 0.95908 1.21909 0.93762 1.01356 0.83727 1.23139 0.97873 0.90733 1.04449 1.23178 0.90067 1.00974 1.04115 0.88887 0.88479 0.89484 0.88345 0.91877 0.91548 0.90804 0.92576 0.92219 0.94459 0.92620 0.93698 0.90974 0.88913 0.86698 0.86951 0.87149 0.87171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.20 8.47 37.16 0.31 -1.88 16 2 C 0.34 3.75 2.18 -26.73 -0.06 3.69 16 3 F -0.19 -2.09 14.28 2.25 0.03 -2.06 16 4 F -0.19 -2.13 15.62 2.25 0.04 -2.10 16 5 C -0.22 -2.53 1.11 -155.66 -0.17 -2.70 16 6 C 0.55 8.33 5.03 -10.98 -0.06 8.27 16 7 O -0.53 -9.82 16.37 5.56 0.09 -9.73 16 8 N -0.60 -8.93 3.00 -172.49 -0.52 -9.45 16 9 C 0.09 1.06 5.79 -3.53 -0.02 1.04 16 10 C -0.12 -1.52 5.72 -26.79 -0.15 -1.67 16 11 C -0.11 -1.87 2.61 -89.51 -0.23 -2.11 16 12 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 13 C -0.14 -2.48 6.54 -25.15 -0.16 -2.65 16 14 C 0.18 4.20 5.45 -1.91 -0.01 4.19 16 15 N -0.59 -14.70 3.35 -162.66 -0.54 -15.25 16 16 C -0.23 -6.30 9.88 -15.06 -0.15 -6.45 16 17 H 0.08 2.09 7.42 -52.49 -0.39 1.71 16 18 C 0.00 -0.13 5.49 -17.43 -0.10 -0.23 16 19 N -0.92 -26.76 10.44 55.49 0.58 -26.18 16 20 Si 0.91 22.17 29.55 -169.99 -5.02 17.14 16 21 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 22 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 23 H -0.28 -6.84 7.11 56.52 0.40 -6.43 16 24 C 0.16 3.19 2.77 -67.61 -0.19 3.00 16 25 H 0.02 0.50 7.93 -51.93 -0.41 0.09 16 26 C 0.11 2.12 5.73 -3.74 -0.02 2.09 16 27 C -0.12 -1.20 9.55 -26.73 -0.26 -1.46 16 28 C -0.15 -1.31 8.79 -26.73 -0.24 -1.54 16 29 H 0.09 1.17 7.45 -51.93 -0.39 0.78 16 30 H 0.10 1.13 8.14 -51.93 -0.42 0.70 16 31 H 0.09 0.81 8.14 -51.93 -0.42 0.38 16 32 H 0.10 1.09 2.97 -51.93 -0.15 0.94 16 33 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.07 0.89 7.98 -51.93 -0.41 0.48 16 35 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.06 0.95 8.12 -51.92 -0.42 0.53 16 37 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 38 H 0.04 0.98 7.77 -51.93 -0.40 0.57 16 39 H 0.06 1.46 7.20 -51.93 -0.37 1.08 16 40 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 41 H 0.07 1.35 8.14 -51.93 -0.42 0.92 16 42 H 0.09 1.93 6.74 -51.93 -0.35 1.58 16 43 H 0.11 0.96 7.18 -51.93 -0.37 0.59 16 44 H 0.11 1.13 8.14 -51.93 -0.42 0.70 16 45 H 0.11 0.95 8.14 -51.93 -0.42 0.53 16 46 H 0.11 0.83 8.14 -51.93 -0.42 0.41 16 LS Contribution 359.54 15.07 5.42 5.42 Total: -1.00 -30.80 359.54 -8.47 -39.27 By element: Atomic # 1 Polarization: 8.36 SS G_CDS: -7.04 Total: 1.32 kcal Atomic # 6 Polarization: 3.11 SS G_CDS: -1.50 Total: 1.61 kcal Atomic # 7 Polarization: -50.39 SS G_CDS: -0.48 Total: -50.88 kcal Atomic # 8 Polarization: -9.82 SS G_CDS: 0.09 Total: -9.73 kcal Atomic # 9 Polarization: -4.22 SS G_CDS: 0.07 Total: -4.15 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.02 Total: 17.14 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -30.80 -8.47 -39.27 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042238721.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.951 kcal (2) G-P(sol) polarization free energy of solvation -30.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.272 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds