Wall clock time and date at job start Tue Mar 31 2020 14:53:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 F 1.39904 * 109.47083 * 2 1 4 4 F 1.39902 * 109.47035 * 119.99801 * 2 1 3 5 5 C 1.53001 * 109.47231 * 239.99718 * 2 1 3 6 6 C 1.50707 * 115.54858 * 28.14948 * 5 2 1 7 7 O 1.21279 * 119.99638 * 260.12667 * 6 5 2 8 8 N 1.34773 * 120.00035 * 80.12331 * 6 5 2 9 9 C 1.46600 * 119.75080 * 354.77881 * 8 6 5 10 10 C 1.53882 * 110.71216 * 227.71288 * 9 8 6 11 11 C 1.51983 * 107.28830 * 308.19641 * 10 9 8 12 12 H 1.09000 * 111.01338 * 302.66050 * 11 10 9 13 13 C 1.53705 * 115.00380 * 175.44740 * 11 10 9 14 14 C 1.55298 * 101.81531 * 206.53878 * 13 11 10 15 15 N 1.48162 * 107.04136 * 22.44021 * 14 13 11 16 16 C 1.36934 * 126.39440 * 184.99882 * 15 14 13 17 17 H 1.08001 * 119.99953 * 180.02562 * 16 15 14 18 18 C 1.38813 * 120.00313 * 0.03224 * 16 15 14 19 19 N 1.31621 * 119.99751 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 119.99907 * 179.97438 * 18 16 15 21 21 H 1.48496 * 109.47322 * 59.99988 * 20 18 16 22 22 H 1.48501 * 109.46838 * 179.97438 * 20 18 16 23 23 H 1.48501 * 109.46934 * 299.99610 * 20 18 16 24 24 C 1.45502 * 107.20617 * 5.00588 * 15 14 13 25 25 H 1.08998 * 109.57536 * 86.62618 * 24 15 14 26 26 C 1.47794 * 119.75219 * 174.50336 * 8 6 5 27 27 C 1.52998 * 117.49890 * 242.44088 * 5 2 1 28 28 C 1.53001 * 117.49968 * 173.81591 * 5 2 1 29 29 H 1.09002 * 109.46672 * 54.69357 * 1 2 3 30 30 H 1.08995 * 109.46853 * 174.69523 * 1 2 3 31 31 H 1.08993 * 109.46960 * 294.69745 * 1 2 3 32 32 H 1.08994 * 109.22933 * 348.03637 * 9 8 6 33 33 H 1.09003 * 109.22939 * 107.39830 * 9 8 6 34 34 H 1.09006 * 109.89064 * 67.63933 * 10 9 8 35 35 H 1.09001 * 109.89520 * 188.74563 * 10 9 8 36 36 H 1.09008 * 110.95828 * 324.66574 * 13 11 10 37 37 H 1.08996 * 110.96280 * 88.36688 * 13 11 10 38 38 H 1.08993 * 109.92043 * 141.78898 * 14 13 11 39 39 H 1.08999 * 109.91473 * 262.89876 * 14 13 11 40 40 H 0.96996 * 119.99828 * 179.97438 * 19 18 16 41 41 H 1.09003 * 110.06608 * 247.99159 * 26 8 6 42 42 H 1.08999 * 110.06209 * 9.55216 * 26 8 6 43 43 H 1.08996 * 117.49912 * 359.97438 * 27 5 2 44 44 H 1.09005 * 117.49532 * 145.02151 * 27 5 2 45 45 H 1.08995 * 117.49783 * 214.97756 * 28 5 2 46 46 H 1.09004 * 117.49688 * 0.02562 * 28 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 9 1.9964 1.3190 0.0000 4 9 1.9964 -0.6595 1.1423 5 6 2.0401 -0.7213 -1.2492 6 6 1.1264 -0.6721 -2.4467 7 8 0.4173 -1.6207 -2.7078 8 7 1.0974 0.4261 -3.2274 9 6 1.8691 1.6121 -2.8438 10 6 1.0039 2.8806 -2.9449 11 6 0.3820 2.8938 -4.3316 12 1 1.1497 2.8607 -5.1047 13 6 -0.6117 4.0382 -4.5871 14 6 -1.5293 3.4247 -5.6795 15 7 -1.4085 1.9520 -5.5711 16 6 -1.9752 1.0266 -6.4064 17 1 -1.8189 -0.0274 -6.2300 18 6 -2.7503 1.4431 -7.4800 19 7 -2.9410 2.7276 -7.6948 20 14 -3.5227 0.1807 -8.6198 21 1 -4.4312 -0.6988 -7.8413 22 1 -4.2963 0.8776 -9.6786 23 1 -2.4549 -0.6401 -9.2454 24 6 -0.5755 1.6726 -4.4113 25 1 -1.1962 1.6370 -3.5160 26 6 0.2926 0.4237 -4.4670 27 6 2.8675 -1.9916 -1.0431 28 6 3.5476 -0.7029 -1.5096 29 1 -0.3633 0.5940 -0.8387 30 1 -0.3633 -1.0232 -0.0950 31 1 -0.3633 0.4294 0.9336 32 1 2.2185 1.4966 -1.8179 33 1 2.7292 1.7104 -3.5062 34 1 0.2205 2.8565 -2.1873 35 1 1.6256 3.7655 -2.8088 36 1 -1.1796 4.2700 -3.6860 37 1 -0.0985 4.9242 -4.9607 38 1 -2.5627 3.7261 -5.5087 39 1 -1.2043 3.7553 -6.6660 40 1 -3.4823 3.0187 -8.4452 41 1 0.9471 0.4584 -5.3380 42 1 -0.3342 -0.4673 -4.5042 43 1 3.0489 -2.3132 -0.0176 44 1 2.7511 -2.7921 -1.7738 45 1 3.8786 -0.6556 -2.5470 46 1 4.1762 -0.1772 -0.7907 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001042238721.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:53:16 Heat of formation + Delta-G solvation = -87.835205 kcal Electronic energy + Delta-G solvation = -30581.464760 eV Core-core repulsion = 26335.999211 eV Total energy + Delta-G solvation = -4245.465549 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 328.170 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -50.23313 -48.19379 -41.76355 -40.03755 -37.65088 -36.88619 -34.66881 -32.90715 -32.55973 -31.01260 -30.18404 -26.58570 -26.43041 -25.17720 -23.79388 -23.37694 -23.22791 -21.81047 -21.10562 -19.96267 -18.97574 -18.61335 -18.47872 -17.51878 -17.38803 -16.76696 -16.71591 -16.22455 -15.72566 -15.71100 -15.49921 -15.35543 -14.96822 -14.62130 -14.52087 -14.44541 -14.11850 -13.90209 -13.77144 -13.65843 -13.44295 -13.27904 -13.11150 -13.06589 -12.78137 -12.71669 -12.53810 -12.50255 -12.11570 -12.02871 -11.84769 -11.68399 -11.58868 -11.53882 -11.29801 -11.04163 -10.90234 -10.73047 -9.75995 -8.91844 -7.86972 -5.21977 1.26484 1.43234 1.45705 1.51923 1.71404 2.28923 2.47952 2.53457 2.96208 3.01015 3.31086 3.33882 3.45322 3.50494 3.78307 3.79912 3.83586 3.95833 3.99135 4.24935 4.28616 4.30333 4.40747 4.49730 4.53209 4.56063 4.59377 4.60473 4.74873 4.80656 4.84238 4.85634 4.89962 4.90679 5.04359 5.09855 5.14007 5.21408 5.35972 5.47910 5.57899 5.65618 5.77693 6.18015 6.29162 6.97324 7.07092 7.75591 8.42722 9.23734 Molecular weight = 328.17amu Principal moments of inertia in cm(-1) A = 0.018741 B = 0.003883 C = 0.003504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1493.709099 B = 7209.490668 C = 7990.050046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.343 3.657 3 F -0.183 7.183 4 F -0.188 7.188 5 C -0.236 4.236 6 C 0.554 3.446 7 O -0.572 6.572 8 N -0.593 5.593 9 C 0.084 3.916 10 C -0.109 4.109 11 C -0.095 4.095 12 H 0.078 0.922 13 C -0.122 4.122 14 C 0.181 3.819 15 N -0.612 5.612 16 C -0.238 4.238 17 H 0.075 0.925 18 C -0.060 4.060 19 N -0.948 5.948 20 Si 0.971 3.029 21 H -0.282 1.282 22 H -0.291 1.291 23 H -0.277 1.277 24 C 0.150 3.850 25 H 0.008 0.992 26 C 0.128 3.872 27 C -0.122 4.122 28 C -0.124 4.124 29 H 0.075 0.925 30 H 0.086 0.914 31 H 0.106 0.894 32 H 0.118 0.882 33 H 0.084 0.916 34 H 0.063 0.937 35 H 0.111 0.889 36 H 0.068 0.932 37 H 0.086 0.914 38 H -0.001 1.001 39 H 0.023 0.977 40 H 0.247 0.753 41 H 0.069 0.931 42 H 0.060 0.940 43 H 0.130 0.870 44 H 0.104 0.896 45 H 0.116 0.884 46 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.414 -1.470 17.412 23.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.255 4.255 2 C 0.306 3.694 3 F -0.164 7.164 4 F -0.169 7.169 5 C -0.240 4.240 6 C 0.341 3.659 7 O -0.452 6.452 8 N -0.325 5.325 9 C -0.037 4.037 10 C -0.147 4.147 11 C -0.115 4.115 12 H 0.096 0.904 13 C -0.160 4.160 14 C 0.056 3.944 15 N -0.337 5.337 16 C -0.367 4.367 17 H 0.093 0.907 18 C -0.253 4.253 19 N -0.596 5.596 20 Si 0.799 3.201 21 H -0.209 1.209 22 H -0.217 1.217 23 H -0.203 1.203 24 C 0.042 3.958 25 H 0.026 0.974 26 C 0.004 3.996 27 C -0.160 4.160 28 C -0.161 4.161 29 H 0.094 0.906 30 H 0.105 0.895 31 H 0.125 0.875 32 H 0.136 0.864 33 H 0.103 0.897 34 H 0.082 0.918 35 H 0.129 0.871 36 H 0.087 0.913 37 H 0.104 0.896 38 H 0.017 0.983 39 H 0.042 0.958 40 H 0.056 0.944 41 H 0.087 0.913 42 H 0.078 0.922 43 H 0.148 0.852 44 H 0.122 0.878 45 H 0.134 0.866 46 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 15.921 -1.929 17.098 23.443 hybrid contribution -1.269 -0.539 -1.152 1.796 sum 14.653 -2.468 15.946 21.796 Atomic orbital electron populations 1.22809 0.90960 1.05763 1.05963 1.19784 0.93579 0.74753 0.81262 1.92906 1.90527 1.37135 1.95830 1.93007 1.90505 1.80910 1.52510 1.22295 0.96895 1.10111 0.94710 1.19480 0.81624 0.82033 0.82734 1.90703 1.43462 1.37905 1.73091 1.48263 1.47258 1.14233 1.22745 1.22436 0.93855 0.83361 1.04038 1.21771 0.99751 0.98298 0.94907 1.22189 0.96318 0.94671 0.98319 0.90405 1.22606 0.97078 0.97816 0.98547 1.21355 0.95259 0.82050 0.95738 1.44418 1.56963 1.02667 1.29686 1.19264 1.24213 0.88402 1.04850 0.90692 1.25536 1.01347 0.97926 1.00502 1.70139 1.44033 1.13959 1.31502 0.85272 0.78261 0.78123 0.78432 1.20876 1.21688 1.20256 1.21178 0.90761 0.94534 0.89308 0.97410 1.21466 0.93500 0.99041 0.85572 1.23245 0.97005 0.90465 1.05240 1.23371 0.87777 0.99765 1.05157 0.90560 0.89467 0.87549 0.86445 0.89739 0.91790 0.87095 0.91293 0.89562 0.98291 0.95826 0.94360 0.91252 0.92162 0.85155 0.87794 0.86565 0.84777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -4.18 8.47 71.98 0.61 -3.57 16 2 C 0.34 6.75 2.18 30.60 0.07 6.82 16 3 F -0.18 -3.39 14.28 44.97 0.64 -2.75 16 4 F -0.19 -3.60 15.62 44.97 0.70 -2.90 16 5 C -0.24 -4.90 1.11 -52.93 -0.06 -4.96 16 6 C 0.55 16.30 5.03 87.66 0.44 16.74 16 7 O -0.57 -21.90 16.37 -3.03 -0.05 -21.95 16 8 N -0.59 -17.16 3.00 -818.03 -2.46 -19.61 16 9 C 0.08 1.78 5.79 86.66 0.50 2.28 16 10 C -0.11 -2.44 5.72 30.56 0.17 -2.27 16 11 C -0.10 -3.00 2.61 -10.07 -0.03 -3.03 16 12 H 0.08 2.49 8.14 -2.39 -0.02 2.47 16 13 C -0.12 -4.23 6.54 31.62 0.21 -4.02 16 14 C 0.18 8.86 5.45 86.85 0.47 9.33 16 15 N -0.61 -31.55 3.35 -668.55 -2.24 -33.79 16 16 C -0.24 -13.58 9.88 84.03 0.83 -12.75 16 17 H 0.08 4.20 7.42 -2.91 -0.02 4.18 16 18 C -0.06 -3.45 5.49 84.86 0.47 -2.99 16 19 N -0.95 -57.33 10.44 21.65 0.23 -57.10 16 20 Si 0.97 46.89 29.55 68.60 2.03 48.92 16 21 H -0.28 -13.42 7.11 99.48 0.71 -12.71 16 22 H -0.29 -13.98 7.11 99.48 0.71 -13.27 16 23 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 24 C 0.15 6.12 2.77 45.73 0.13 6.25 16 25 H 0.01 0.37 7.93 -2.39 -0.02 0.35 16 26 C 0.13 4.81 5.73 85.87 0.49 5.30 16 27 C -0.12 -2.06 9.55 30.60 0.29 -1.77 16 28 C -0.12 -1.74 8.79 30.60 0.27 -1.47 16 29 H 0.08 1.88 7.45 -2.39 -0.02 1.86 16 30 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 31 H 0.11 1.78 8.14 -2.39 -0.02 1.76 16 32 H 0.12 2.11 2.97 -2.39 -0.01 2.10 16 33 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 34 H 0.06 1.51 7.98 -2.38 -0.02 1.49 16 35 H 0.11 1.80 8.14 -2.39 -0.02 1.78 16 36 H 0.07 2.22 8.12 -2.38 -0.02 2.20 16 37 H 0.09 2.56 8.14 -2.39 -0.02 2.54 16 38 H 0.00 -0.07 7.77 -2.39 -0.02 -0.08 16 39 H 0.02 1.29 7.20 -2.39 -0.02 1.27 16 40 H 0.25 14.59 8.31 -92.71 -0.77 13.82 16 41 H 0.07 2.62 8.14 -2.39 -0.02 2.60 16 42 H 0.06 2.65 6.74 -2.39 -0.02 2.63 16 43 H 0.13 1.79 7.18 -2.39 -0.02 1.77 16 44 H 0.10 1.95 8.14 -2.38 -0.02 1.93 16 45 H 0.12 1.55 8.14 -2.39 -0.02 1.53 16 46 H 0.13 1.31 8.14 -2.38 -0.02 1.29 16 Total: -1.00 -71.19 359.54 4.70 -66.49 By element: Atomic # 1 Polarization: 11.82 SS G_CDS: 0.98 Total: 12.80 kcal Atomic # 6 Polarization: 5.03 SS G_CDS: 4.86 Total: 9.89 kcal Atomic # 7 Polarization: -106.04 SS G_CDS: -4.47 Total: -110.51 kcal Atomic # 8 Polarization: -21.90 SS G_CDS: -0.05 Total: -21.95 kcal Atomic # 9 Polarization: -6.99 SS G_CDS: 1.34 Total: -5.64 kcal Atomic # 14 Polarization: 46.89 SS G_CDS: 2.03 Total: 48.92 kcal Total: -71.19 4.70 -66.49 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042238721.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.344 kcal (2) G-P(sol) polarization free energy of solvation -71.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.491 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds