Wall clock time and date at job start Tue Mar 31 2020 14:53:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 F 1.39906 * 109.46740 * 2 1 4 4 F 1.39898 * 109.47254 * 240.00460 * 2 1 3 5 5 C 1.53001 * 109.47400 * 120.00245 * 2 1 3 6 6 C 1.50697 * 115.54762 * 304.34578 * 5 2 1 7 7 O 1.21283 * 120.00152 * 102.74660 * 6 5 2 8 8 N 1.34781 * 120.00340 * 282.74533 * 6 5 2 9 9 C 1.46600 * 119.74987 * 354.42095 * 8 6 5 10 10 C 1.53855 * 110.73265 * 132.26037 * 9 8 6 11 11 C 1.51979 * 107.29632 * 51.78975 * 10 9 8 12 12 H 1.09008 * 111.56998 * 56.86618 * 11 10 9 13 13 C 1.53699 * 115.00445 * 184.57964 * 11 10 9 14 14 C 1.55294 * 101.82003 * 153.46043 * 13 11 10 15 15 N 1.48163 * 107.20940 * 337.45089 * 14 13 11 16 16 C 1.36932 * 126.39665 * 175.09284 * 15 14 13 17 17 H 1.08002 * 120.00331 * 180.02562 * 16 15 14 18 18 C 1.38814 * 120.00390 * 0.02856 * 16 15 14 19 19 N 1.31622 * 119.99726 * 359.97438 * 18 16 15 20 20 Si 1.86795 * 120.00558 * 179.97438 * 18 16 15 21 21 H 1.48492 * 109.47073 * 89.99892 * 20 18 16 22 22 H 1.48494 * 109.47420 * 210.00396 * 20 18 16 23 23 H 1.48503 * 109.46918 * 330.00114 * 20 18 16 24 24 C 1.45905 * 106.99308 * 355.18271 * 15 14 13 25 25 H 1.09001 * 108.87491 * 273.46825 * 24 15 14 26 26 C 1.47789 * 119.76226 * 174.40155 * 8 6 5 27 27 C 1.52998 * 117.49867 * 90.01147 * 5 2 1 28 28 C 1.52996 * 117.50143 * 158.67206 * 5 2 1 29 29 H 1.09000 * 109.47403 * 295.71711 * 1 2 3 30 30 H 1.09000 * 109.47086 * 55.72771 * 1 2 3 31 31 H 1.09000 * 109.46909 * 175.71767 * 1 2 3 32 32 H 1.08998 * 109.22812 * 252.57311 * 9 8 6 33 33 H 1.09002 * 109.22919 * 11.93924 * 9 8 6 34 34 H 1.08998 * 109.88226 * 292.35070 * 10 9 8 35 35 H 1.08997 * 109.89862 * 171.24094 * 10 9 8 36 36 H 1.08997 * 110.95689 * 35.32271 * 13 11 10 37 37 H 1.09002 * 110.99004 * 271.60762 * 13 11 10 38 38 H 1.08996 * 109.92181 * 96.90281 * 14 13 11 39 39 H 1.09003 * 109.92005 * 218.01013 * 14 13 11 40 40 H 0.96999 * 120.00412 * 179.97438 * 19 18 16 41 41 H 1.08995 * 110.07010 * 112.03516 * 26 8 6 42 42 H 1.09007 * 110.15186 * 350.51863 * 26 8 6 43 43 H 1.08998 * 117.49748 * 215.00379 * 27 5 2 44 44 H 1.09004 * 117.49819 * 0.02902 * 27 5 2 45 45 H 1.08998 * 117.49730 * 359.97438 * 28 5 2 46 46 H 1.08995 * 117.49742 * 144.99444 * 28 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 9 1.9963 1.3191 0.0000 4 9 1.9964 -0.6594 -1.1423 5 6 2.0401 -0.7213 1.2492 6 6 1.5335 -0.1834 2.5626 7 8 0.6551 -0.7691 3.1595 8 7 2.0566 0.9486 3.0741 9 6 3.1998 1.5852 2.4129 10 6 2.9591 3.0953 2.2431 11 6 2.5681 3.6464 3.6044 12 1 3.3287 3.4345 4.3560 13 6 2.1777 5.1329 3.6157 14 6 1.2247 5.2022 4.8399 15 7 0.7046 3.8339 5.0685 16 6 -0.0942 3.4309 6.1052 17 1 -0.4146 2.4017 6.1716 18 6 -0.4922 4.3453 7.0708 19 7 -0.1013 5.5995 6.9903 20 14 -1.5824 3.7958 8.4846 21 1 -0.7344 3.3446 9.6171 22 1 -2.4325 4.9311 8.9244 23 1 -2.4469 2.6747 8.0362 24 6 1.2067 2.9997 3.9818 25 1 0.5221 3.0718 3.1367 26 6 1.4734 1.5391 4.2969 27 6 2.2758 -2.2296 1.1473 28 6 3.4674 -1.2711 1.2142 29 1 -0.3634 0.4459 0.9259 30 1 -0.3633 0.5787 -0.8492 31 1 -0.3633 -1.0248 -0.0767 32 1 4.0949 1.4301 3.0153 33 1 3.3451 1.1324 1.4321 34 1 2.1530 3.2642 1.5292 35 1 3.8715 3.5795 1.8951 36 1 1.6551 5.4057 2.6988 37 1 3.0526 5.7653 3.7663 38 1 1.7728 5.5428 5.7183 39 1 0.3996 5.8829 4.6302 40 1 -0.3797 6.2386 7.6648 41 1 2.1781 1.4576 5.1244 42 1 0.5407 1.0347 4.5495 43 1 2.0646 -2.8327 2.0302 44 1 2.0680 -2.7079 0.1901 45 1 4.0430 -1.1193 0.3011 46 1 4.0401 -1.2436 2.1412 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001042238722.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:53:20 Heat of formation + Delta-G solvation = -71.320533 kcal Electronic energy + Delta-G solvation = -30649.294106 eV Core-core repulsion = 26404.544688 eV Total energy + Delta-G solvation = -4244.749419 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 328.170 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -49.28451 -47.25632 -40.50594 -38.62332 -36.67600 -35.38240 -32.88824 -31.54362 -31.23263 -29.51242 -28.49869 -25.50712 -24.67395 -23.90418 -22.93678 -22.14214 -22.00680 -20.06353 -19.54599 -19.00847 -17.82586 -17.59748 -16.65280 -16.49975 -16.12439 -15.67256 -14.90443 -14.83135 -14.57128 -14.38306 -14.14378 -13.95598 -13.72563 -13.48990 -13.30151 -13.07891 -12.98713 -12.74996 -12.53350 -12.41812 -12.17812 -11.95896 -11.89632 -11.83339 -11.51297 -11.30097 -10.97208 -10.90723 -10.76539 -10.74961 -10.55189 -10.15140 -9.96648 -9.85328 -9.74779 -9.62730 -9.46639 -8.62534 -8.46489 -6.85322 -5.71524 -3.05229 2.38837 2.87645 3.14861 3.41428 3.44631 3.47267 3.49058 3.85402 4.02671 4.24190 4.28336 4.50867 4.63778 4.72302 4.98751 5.01199 5.13635 5.21968 5.24442 5.31796 5.40450 5.46336 5.50878 5.58046 5.63698 5.71409 5.72621 5.73912 5.81172 5.89504 6.05045 6.10831 6.13697 6.24928 6.34998 6.48482 6.58738 6.68834 6.76015 7.05869 7.48300 7.55598 7.61478 7.81682 8.16896 8.23435 9.19040 9.81792 10.49345 11.40714 Molecular weight = 328.17amu Principal moments of inertia in cm(-1) A = 0.018338 B = 0.003958 C = 0.003592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1526.488306 B = 7072.545295 C = 7792.256998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.334 3.666 3 F -0.186 7.186 4 F -0.195 7.195 5 C -0.216 4.216 6 C 0.552 3.448 7 O -0.529 6.529 8 N -0.592 5.592 9 C 0.100 3.900 10 C -0.116 4.116 11 C -0.112 4.112 12 H 0.076 0.924 13 C -0.138 4.138 14 C 0.177 3.823 15 N -0.593 5.593 16 C -0.228 4.228 17 H 0.079 0.921 18 C -0.006 4.006 19 N -0.921 5.921 20 Si 0.910 3.090 21 H -0.289 1.289 22 H -0.291 1.291 23 H -0.281 1.281 24 C 0.155 3.845 25 H 0.025 0.975 26 C 0.117 3.883 27 C -0.124 4.124 28 C -0.150 4.150 29 H 0.092 0.908 30 H 0.084 0.916 31 H 0.092 0.908 32 H 0.062 0.938 33 H 0.090 0.910 34 H 0.071 0.929 35 H 0.072 0.928 36 H 0.056 0.944 37 H 0.059 0.941 38 H 0.055 0.945 39 H 0.038 0.962 40 H 0.252 0.748 41 H 0.072 0.928 42 H 0.091 0.909 43 H 0.113 0.887 44 H 0.112 0.888 45 H 0.111 0.889 46 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.886 -10.939 -15.722 21.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C 0.298 3.702 3 F -0.166 7.166 4 F -0.176 7.176 5 C -0.220 4.220 6 C 0.337 3.663 7 O -0.405 6.405 8 N -0.325 5.325 9 C -0.022 4.022 10 C -0.155 4.155 11 C -0.132 4.132 12 H 0.095 0.905 13 C -0.176 4.176 14 C 0.052 3.948 15 N -0.318 5.318 16 C -0.356 4.356 17 H 0.097 0.903 18 C -0.202 4.202 19 N -0.568 5.568 20 Si 0.740 3.260 21 H -0.216 1.216 22 H -0.217 1.217 23 H -0.206 1.206 24 C 0.047 3.953 25 H 0.042 0.958 26 C -0.005 4.005 27 C -0.161 4.161 28 C -0.187 4.187 29 H 0.111 0.889 30 H 0.103 0.897 31 H 0.111 0.889 32 H 0.080 0.920 33 H 0.108 0.892 34 H 0.089 0.911 35 H 0.090 0.910 36 H 0.075 0.925 37 H 0.078 0.922 38 H 0.073 0.927 39 H 0.056 0.944 40 H 0.062 0.938 41 H 0.090 0.910 42 H 0.110 0.890 43 H 0.131 0.869 44 H 0.130 0.870 45 H 0.130 0.870 46 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 8.307 -11.096 -15.197 20.569 hybrid contribution -0.423 0.035 0.672 0.795 sum 7.884 -11.061 -14.525 19.887 Atomic orbital electron populations 1.22726 0.90486 1.05802 1.05793 1.20005 0.93987 0.75107 0.81117 1.93016 1.90231 1.36908 1.96478 1.92997 1.90666 1.81049 1.52847 1.22380 1.04519 1.00488 0.94661 1.18926 0.82028 0.80914 0.84386 1.90722 1.30837 1.58128 1.60829 1.48211 1.32455 1.24157 1.27650 1.21967 0.87630 0.94558 0.98088 1.21752 1.02023 0.93718 0.97979 1.22263 0.98403 0.96626 0.95897 0.90533 1.22721 0.99741 0.94844 1.00278 1.21540 0.94048 0.86192 0.92971 1.44274 1.57134 1.04548 1.25839 1.19027 1.22023 0.94747 0.99795 0.90339 1.24774 1.00746 0.95656 0.99034 1.69946 1.49014 1.02008 1.35875 0.86148 0.80079 0.77377 0.82394 1.21591 1.21684 1.20616 1.21073 0.92633 0.89573 0.92057 0.95773 1.21779 0.99402 0.94935 0.84404 1.23099 0.99469 0.88474 1.05077 1.23221 0.89055 1.01429 1.04966 0.88937 0.89671 0.88928 0.92000 0.89212 0.91071 0.90984 0.92546 0.92234 0.92687 0.94427 0.93770 0.90986 0.89033 0.86898 0.86986 0.87030 0.87236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.05 9.22 37.16 0.34 -1.70 16 2 C 0.33 3.77 2.09 -26.73 -0.06 3.72 16 3 F -0.19 -2.30 13.32 2.25 0.03 -2.27 16 4 F -0.19 -2.08 15.64 2.25 0.04 -2.05 16 5 C -0.22 -2.48 0.82 -155.66 -0.13 -2.61 16 6 C 0.55 8.43 5.71 -10.99 -0.06 8.37 16 7 O -0.53 -9.87 16.36 5.55 0.09 -9.77 16 8 N -0.59 -9.14 3.01 -172.76 -0.52 -9.66 16 9 C 0.10 1.27 5.13 -3.54 -0.02 1.25 16 10 C -0.12 -1.57 5.51 -26.81 -0.15 -1.72 16 11 C -0.11 -1.91 2.61 -89.51 -0.23 -2.15 16 12 H 0.08 1.34 8.13 -51.92 -0.42 0.92 16 13 C -0.14 -2.51 6.54 -25.15 -0.16 -2.68 16 14 C 0.18 4.23 5.44 -1.91 -0.01 4.22 16 15 N -0.59 -14.88 3.36 -162.61 -0.55 -15.42 16 16 C -0.23 -6.29 9.90 -15.06 -0.15 -6.43 16 17 H 0.08 2.12 7.45 -52.49 -0.39 1.73 16 18 C -0.01 -0.16 5.49 -17.43 -0.10 -0.26 16 19 N -0.92 -26.91 10.43 55.49 0.58 -26.33 16 20 Si 0.91 22.27 29.55 -169.99 -5.02 17.25 16 21 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 22 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 23 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 24 C 0.16 3.18 2.76 -67.61 -0.19 2.99 16 25 H 0.02 0.54 7.94 -51.93 -0.41 0.13 16 26 C 0.12 2.20 5.69 -3.95 -0.02 2.18 16 27 C -0.12 -1.15 9.55 -26.70 -0.26 -1.40 16 28 C -0.15 -1.31 8.20 -26.70 -0.22 -1.53 16 29 H 0.09 1.19 7.29 -51.93 -0.38 0.81 16 30 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 31 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.09 1.01 3.54 -51.93 -0.18 0.83 16 34 H 0.07 1.03 7.33 -51.93 -0.38 0.65 16 35 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.06 0.98 8.12 -51.93 -0.42 0.56 16 37 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 38 H 0.05 1.45 7.21 -51.93 -0.37 1.08 16 39 H 0.04 0.99 7.76 -51.93 -0.40 0.59 16 40 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 41 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 42 H 0.09 1.93 6.83 -51.93 -0.35 1.58 16 43 H 0.11 1.09 8.14 -51.93 -0.42 0.67 16 44 H 0.11 0.86 7.65 -51.93 -0.40 0.46 16 45 H 0.11 0.83 7.91 -51.93 -0.41 0.42 16 46 H 0.11 0.92 8.14 -51.93 -0.42 0.50 16 LS Contribution 358.28 15.07 5.40 5.40 Total: -1.00 -31.20 358.28 -8.41 -39.61 By element: Atomic # 1 Polarization: 8.04 SS G_CDS: -7.05 Total: 1.00 kcal Atomic # 6 Polarization: 3.65 SS G_CDS: -1.41 Total: 2.25 kcal Atomic # 7 Polarization: -50.92 SS G_CDS: -0.49 Total: -51.41 kcal Atomic # 8 Polarization: -9.87 SS G_CDS: 0.09 Total: -9.77 kcal Atomic # 9 Polarization: -4.38 SS G_CDS: 0.07 Total: -4.31 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.02 Total: 17.25 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -31.20 -8.41 -39.61 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042238722.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.709 kcal (2) G-P(sol) polarization free energy of solvation -31.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.611 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds