Wall clock time and date at job start Tue Mar 31 2020 14:53:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 F 1.39906 * 109.46740 * 2 1 4 4 F 1.39898 * 109.47254 * 240.00460 * 2 1 3 5 5 C 1.53001 * 109.47400 * 120.00245 * 2 1 3 6 6 C 1.50697 * 115.54762 * 304.34578 * 5 2 1 7 7 O 1.21283 * 120.00152 * 102.74660 * 6 5 2 8 8 N 1.34781 * 120.00340 * 282.74533 * 6 5 2 9 9 C 1.46600 * 119.74987 * 354.42095 * 8 6 5 10 10 C 1.53855 * 110.73265 * 132.26037 * 9 8 6 11 11 C 1.51979 * 107.29632 * 51.78975 * 10 9 8 12 12 H 1.09008 * 111.56998 * 56.86618 * 11 10 9 13 13 C 1.53699 * 115.00445 * 184.57964 * 11 10 9 14 14 C 1.55294 * 101.82003 * 153.46043 * 13 11 10 15 15 N 1.48163 * 107.20940 * 337.45089 * 14 13 11 16 16 C 1.36932 * 126.39665 * 175.09284 * 15 14 13 17 17 H 1.08002 * 120.00331 * 180.02562 * 16 15 14 18 18 C 1.38814 * 120.00390 * 0.02856 * 16 15 14 19 19 N 1.31622 * 119.99726 * 359.97438 * 18 16 15 20 20 Si 1.86795 * 120.00558 * 179.97438 * 18 16 15 21 21 H 1.48492 * 109.47073 * 89.99892 * 20 18 16 22 22 H 1.48494 * 109.47420 * 210.00396 * 20 18 16 23 23 H 1.48503 * 109.46918 * 330.00114 * 20 18 16 24 24 C 1.45905 * 106.99308 * 355.18271 * 15 14 13 25 25 H 1.09001 * 108.87491 * 273.46825 * 24 15 14 26 26 C 1.47789 * 119.76226 * 174.40155 * 8 6 5 27 27 C 1.52998 * 117.49867 * 90.01147 * 5 2 1 28 28 C 1.52996 * 117.50143 * 158.67206 * 5 2 1 29 29 H 1.09000 * 109.47403 * 295.71711 * 1 2 3 30 30 H 1.09000 * 109.47086 * 55.72771 * 1 2 3 31 31 H 1.09000 * 109.46909 * 175.71767 * 1 2 3 32 32 H 1.08998 * 109.22812 * 252.57311 * 9 8 6 33 33 H 1.09002 * 109.22919 * 11.93924 * 9 8 6 34 34 H 1.08998 * 109.88226 * 292.35070 * 10 9 8 35 35 H 1.08997 * 109.89862 * 171.24094 * 10 9 8 36 36 H 1.08997 * 110.95689 * 35.32271 * 13 11 10 37 37 H 1.09002 * 110.99004 * 271.60762 * 13 11 10 38 38 H 1.08996 * 109.92181 * 96.90281 * 14 13 11 39 39 H 1.09003 * 109.92005 * 218.01013 * 14 13 11 40 40 H 0.96999 * 120.00412 * 179.97438 * 19 18 16 41 41 H 1.08995 * 110.07010 * 112.03516 * 26 8 6 42 42 H 1.09007 * 110.15186 * 350.51863 * 26 8 6 43 43 H 1.08998 * 117.49748 * 215.00379 * 27 5 2 44 44 H 1.09004 * 117.49819 * 0.02902 * 27 5 2 45 45 H 1.08998 * 117.49730 * 359.97438 * 28 5 2 46 46 H 1.08995 * 117.49742 * 144.99444 * 28 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 9 1.9963 1.3191 0.0000 4 9 1.9964 -0.6594 -1.1423 5 6 2.0401 -0.7213 1.2492 6 6 1.5335 -0.1834 2.5626 7 8 0.6551 -0.7691 3.1595 8 7 2.0566 0.9486 3.0741 9 6 3.1998 1.5852 2.4129 10 6 2.9591 3.0953 2.2431 11 6 2.5681 3.6464 3.6044 12 1 3.3287 3.4345 4.3560 13 6 2.1777 5.1329 3.6157 14 6 1.2247 5.2022 4.8399 15 7 0.7046 3.8339 5.0685 16 6 -0.0942 3.4309 6.1052 17 1 -0.4146 2.4017 6.1716 18 6 -0.4922 4.3453 7.0708 19 7 -0.1013 5.5995 6.9903 20 14 -1.5824 3.7958 8.4846 21 1 -0.7344 3.3446 9.6171 22 1 -2.4325 4.9311 8.9244 23 1 -2.4469 2.6747 8.0362 24 6 1.2067 2.9997 3.9818 25 1 0.5221 3.0718 3.1367 26 6 1.4734 1.5391 4.2969 27 6 2.2758 -2.2296 1.1473 28 6 3.4674 -1.2711 1.2142 29 1 -0.3634 0.4459 0.9259 30 1 -0.3633 0.5787 -0.8492 31 1 -0.3633 -1.0248 -0.0767 32 1 4.0949 1.4301 3.0153 33 1 3.3451 1.1324 1.4321 34 1 2.1530 3.2642 1.5292 35 1 3.8715 3.5795 1.8951 36 1 1.6551 5.4057 2.6988 37 1 3.0526 5.7653 3.7663 38 1 1.7728 5.5428 5.7183 39 1 0.3996 5.8829 4.6302 40 1 -0.3797 6.2386 7.6648 41 1 2.1781 1.4576 5.1244 42 1 0.5407 1.0347 4.5495 43 1 2.0646 -2.8327 2.0302 44 1 2.0680 -2.7079 0.1901 45 1 4.0430 -1.1193 0.3011 46 1 4.0401 -1.2436 2.1412 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001042238722.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:53:19 Heat of formation + Delta-G solvation = -89.443046 kcal Electronic energy + Delta-G solvation = -30650.079958 eV Core-core repulsion = 26404.544688 eV Total energy + Delta-G solvation = -4245.535270 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 328.170 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -50.15736 -48.12814 -41.73122 -40.04217 -37.67046 -36.88954 -34.67168 -32.90599 -32.36996 -31.05570 -30.20107 -26.65348 -26.50379 -25.13226 -23.83246 -23.32017 -23.15850 -21.81491 -21.06780 -20.05532 -18.97887 -18.49017 -18.46440 -17.50026 -17.28036 -16.83510 -16.65841 -16.19483 -15.83210 -15.68727 -15.45360 -15.35751 -14.82444 -14.60746 -14.46297 -14.38168 -14.16528 -13.88121 -13.80012 -13.57034 -13.44941 -13.31115 -13.13938 -13.06745 -12.80151 -12.74887 -12.54536 -12.52155 -12.11984 -12.01745 -11.82521 -11.67125 -11.55492 -11.53644 -11.29066 -11.04657 -10.88569 -10.74015 -9.76216 -8.92500 -7.87368 -5.22364 1.24767 1.43048 1.44138 1.52994 1.73738 2.31929 2.47588 2.55905 2.98786 3.09803 3.30831 3.33852 3.47640 3.49588 3.78176 3.82892 3.86122 3.95134 3.99127 4.24865 4.27374 4.28900 4.42444 4.51221 4.53862 4.59773 4.60129 4.62133 4.72595 4.80174 4.85432 4.88493 4.89349 4.90703 5.06399 5.10215 5.14888 5.20693 5.35483 5.47879 5.57742 5.65177 5.77115 6.17081 6.29232 6.96757 7.06401 7.74282 8.42367 9.23560 Molecular weight = 328.17amu Principal moments of inertia in cm(-1) A = 0.018338 B = 0.003958 C = 0.003592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1526.488306 B = 7072.545295 C = 7792.256998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.339 3.661 3 F -0.192 7.192 4 F -0.186 7.186 5 C -0.234 4.234 6 C 0.551 3.449 7 O -0.572 6.572 8 N -0.593 5.593 9 C 0.097 3.903 10 C -0.108 4.108 11 C -0.095 4.095 12 H 0.077 0.923 13 C -0.122 4.122 14 C 0.180 3.820 15 N -0.613 5.613 16 C -0.237 4.237 17 H 0.075 0.925 18 C -0.060 4.060 19 N -0.948 5.948 20 Si 0.972 3.028 21 H -0.283 1.283 22 H -0.292 1.292 23 H -0.275 1.275 24 C 0.149 3.851 25 H 0.008 0.992 26 C 0.130 3.870 27 C -0.117 4.117 28 C -0.129 4.129 29 H 0.064 0.936 30 H 0.098 0.902 31 H 0.104 0.896 32 H 0.084 0.916 33 H 0.111 0.889 34 H 0.063 0.937 35 H 0.109 0.891 36 H 0.068 0.932 37 H 0.086 0.914 38 H 0.023 0.977 39 H -0.001 1.001 40 H 0.247 0.753 41 H 0.068 0.932 42 H 0.059 0.941 43 H 0.105 0.895 44 H 0.132 0.868 45 H 0.134 0.866 46 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.204 -12.304 -17.938 24.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.249 4.249 2 C 0.302 3.698 3 F -0.173 7.173 4 F -0.167 7.167 5 C -0.238 4.238 6 C 0.338 3.662 7 O -0.451 6.451 8 N -0.324 5.324 9 C -0.024 4.024 10 C -0.146 4.146 11 C -0.115 4.115 12 H 0.096 0.904 13 C -0.160 4.160 14 C 0.056 3.944 15 N -0.339 5.339 16 C -0.366 4.366 17 H 0.093 0.907 18 C -0.254 4.254 19 N -0.597 5.597 20 Si 0.800 3.200 21 H -0.210 1.210 22 H -0.218 1.218 23 H -0.200 1.200 24 C 0.041 3.959 25 H 0.025 0.975 26 C 0.007 3.993 27 C -0.154 4.154 28 C -0.166 4.166 29 H 0.083 0.917 30 H 0.117 0.883 31 H 0.123 0.877 32 H 0.102 0.898 33 H 0.129 0.871 34 H 0.082 0.918 35 H 0.128 0.872 36 H 0.086 0.914 37 H 0.105 0.895 38 H 0.042 0.958 39 H 0.018 0.982 40 H 0.056 0.944 41 H 0.086 0.914 42 H 0.077 0.923 43 H 0.123 0.877 44 H 0.150 0.850 45 H 0.152 0.848 46 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 10.661 -12.479 -17.459 23.962 hybrid contribution -1.186 0.425 1.329 1.831 sum 9.475 -12.054 -16.130 22.254 Atomic orbital electron populations 1.22733 0.90697 1.06631 1.04874 1.19894 0.93884 0.74787 0.81197 1.92998 1.90276 1.37474 1.96521 1.93013 1.90552 1.80843 1.52295 1.22206 1.07273 1.02021 0.92301 1.19548 0.81100 0.80221 0.85327 1.90696 1.32673 1.59361 1.62403 1.48248 1.33135 1.24413 1.26636 1.22229 0.87004 0.93828 0.99326 1.21742 1.03428 0.94301 0.95144 1.22189 0.95948 0.95090 0.98240 0.90434 1.22598 0.99255 0.96428 0.97714 1.21357 0.93567 0.85107 0.94390 1.44533 1.57152 1.06003 1.26184 1.19295 1.22137 0.94638 1.00513 0.90705 1.25543 1.02472 0.95833 1.01529 1.70150 1.50228 1.02818 1.36475 0.85180 0.78415 0.76868 0.79524 1.21003 1.21827 1.20034 1.21192 0.94268 0.90535 0.89894 0.97481 1.21329 0.98168 0.93700 0.86142 1.23227 0.99355 0.87058 1.05795 1.23419 0.87794 0.98997 1.06362 0.91729 0.88271 0.87718 0.89818 0.87075 0.91787 0.87243 0.91373 0.89514 0.95849 0.98232 0.94358 0.91391 0.92257 0.87687 0.85021 0.84774 0.86583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.91 9.22 71.98 0.66 -3.24 16 2 C 0.34 6.79 2.09 30.59 0.06 6.86 16 3 F -0.19 -4.20 13.32 44.97 0.60 -3.60 16 4 F -0.19 -3.31 15.64 44.97 0.70 -2.60 16 5 C -0.23 -4.82 0.82 -52.93 -0.04 -4.86 16 6 C 0.55 16.49 5.71 87.66 0.50 16.99 16 7 O -0.57 -21.91 16.36 -3.04 -0.05 -21.96 16 8 N -0.59 -17.74 3.01 -818.88 -2.47 -20.21 16 9 C 0.10 2.14 5.13 86.65 0.44 2.59 16 10 C -0.11 -2.55 5.51 30.55 0.17 -2.38 16 11 C -0.10 -3.09 2.61 -10.08 -0.03 -3.11 16 12 H 0.08 2.55 8.13 -2.38 -0.02 2.53 16 13 C -0.12 -4.31 6.54 31.62 0.21 -4.11 16 14 C 0.18 8.96 5.44 86.85 0.47 9.43 16 15 N -0.61 -32.01 3.36 -668.39 -2.25 -34.26 16 16 C -0.24 -13.61 9.90 84.03 0.83 -12.78 16 17 H 0.08 4.24 7.45 -2.91 -0.02 4.21 16 18 C -0.06 -3.52 5.49 84.86 0.47 -3.05 16 19 N -0.95 -57.68 10.43 21.65 0.23 -57.45 16 20 Si 0.97 47.17 29.55 68.60 2.03 49.19 16 21 H -0.28 -13.41 7.11 99.48 0.71 -12.70 16 22 H -0.29 -14.13 7.11 99.48 0.71 -13.43 16 23 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 24 C 0.15 6.20 2.76 45.52 0.13 6.33 16 25 H 0.01 0.35 7.94 -2.39 -0.02 0.33 16 26 C 0.13 5.02 5.69 85.73 0.49 5.51 16 27 C -0.12 -1.84 9.55 30.62 0.29 -1.54 16 28 C -0.13 -1.75 8.20 30.62 0.25 -1.50 16 29 H 0.06 1.69 7.29 -2.39 -0.02 1.68 16 30 H 0.10 1.69 8.14 -2.39 -0.02 1.67 16 31 H 0.10 1.83 8.14 -2.39 -0.02 1.81 16 32 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 33 H 0.11 2.04 3.54 -2.39 -0.01 2.03 16 34 H 0.06 1.66 7.33 -2.39 -0.02 1.64 16 35 H 0.11 1.90 8.14 -2.39 -0.02 1.88 16 36 H 0.07 2.26 8.12 -2.39 -0.02 2.24 16 37 H 0.09 2.63 8.14 -2.39 -0.02 2.61 16 38 H 0.02 1.29 7.21 -2.39 -0.02 1.27 16 39 H 0.00 -0.03 7.76 -2.39 -0.02 -0.05 16 40 H 0.25 14.63 8.31 -92.71 -0.77 13.86 16 41 H 0.07 2.64 8.14 -2.39 -0.02 2.62 16 42 H 0.06 2.65 6.83 -2.38 -0.02 2.63 16 43 H 0.10 1.85 8.14 -2.39 -0.02 1.83 16 44 H 0.13 1.55 7.65 -2.38 -0.02 1.53 16 45 H 0.13 1.29 7.91 -2.39 -0.02 1.27 16 46 H 0.12 1.48 8.14 -2.39 -0.02 1.46 16 Total: -1.00 -72.26 358.28 4.68 -67.58 By element: Atomic # 1 Polarization: 11.21 SS G_CDS: 0.98 Total: 12.19 kcal Atomic # 6 Polarization: 6.21 SS G_CDS: 4.90 Total: 11.12 kcal Atomic # 7 Polarization: -107.43 SS G_CDS: -4.49 Total: -111.91 kcal Atomic # 8 Polarization: -21.91 SS G_CDS: -0.05 Total: -21.96 kcal Atomic # 9 Polarization: -7.51 SS G_CDS: 1.30 Total: -6.21 kcal Atomic # 14 Polarization: 47.17 SS G_CDS: 2.03 Total: 49.19 kcal Total: -72.26 4.68 -67.58 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042238722.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.864 kcal (2) G-P(sol) polarization free energy of solvation -72.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.579 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds