Wall clock time and date at job start Tue Mar 31 2020 14:53:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 F 1.39896 * 109.47447 * 2 1 4 4 F 1.39903 * 109.46776 * 240.00232 * 2 1 3 5 5 C 1.53004 * 109.47422 * 120.00313 * 2 1 3 6 6 C 1.50702 * 115.54701 * 298.24709 * 5 2 1 7 7 O 1.21279 * 120.00107 * 98.19526 * 6 5 2 8 8 N 1.34830 * 119.99736 * 278.19034 * 6 5 2 9 9 C 1.43669 * 121.09595 * 354.78280 * 8 6 5 10 10 C 1.51845 * 113.75474 * 261.04983 * 9 8 6 11 11 C 1.50271 * 115.96168 * 290.32725 * 10 9 8 12 12 H 1.09297 * 111.96938 * 180.58759 * 11 10 9 13 13 C 1.54090 * 108.69592 * 304.25648 * 11 10 9 14 14 C 1.54234 * 103.65650 * 83.70047 * 13 11 10 15 15 C 1.50782 * 104.61442 * 19.12182 * 14 13 11 16 16 H 1.10228 * 107.93209 * 115.70779 * 15 14 13 17 17 C 1.52046 * 118.30679 * 174.59873 * 8 6 5 18 18 N 1.49177 * 111.55088 * 359.51245 * 15 14 13 19 19 C 1.35819 * 128.73332 * 161.02176 * 18 15 14 20 20 H 1.08001 * 120.00101 * 180.24408 * 19 18 15 21 21 C 1.38815 * 120.00098 * 0.23901 * 19 18 15 22 22 N 1.31619 * 119.99697 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 120.00172 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.46946 * 59.99906 * 23 21 19 25 25 H 1.48501 * 109.47151 * 179.97438 * 23 21 19 26 26 H 1.48496 * 109.46886 * 300.00013 * 23 21 19 27 27 C 1.52996 * 117.51769 * 83.94315 * 5 2 1 28 28 C 1.52995 * 117.49930 * 152.57726 * 5 2 1 29 29 H 1.09006 * 109.47052 * 295.84934 * 1 2 3 30 30 H 1.08996 * 109.47210 * 55.84581 * 1 2 3 31 31 H 1.08998 * 109.47148 * 175.84927 * 1 2 3 32 32 H 1.08283 * 111.27812 * 136.31390 * 9 8 6 33 33 H 1.10245 * 107.87895 * 19.68613 * 9 8 6 34 34 H 1.09492 * 108.03129 * 52.85711 * 10 9 8 35 35 H 1.09613 * 107.79374 * 168.23173 * 10 9 8 36 36 H 1.09178 * 110.85081 * 202.32736 * 13 11 10 37 37 H 1.09144 * 110.90016 * 324.97389 * 13 11 10 38 38 H 1.08518 * 111.66030 * 257.29172 * 14 13 11 39 39 H 1.09907 * 109.32484 * 137.16518 * 14 13 11 40 40 H 1.08415 * 108.56944 * 30.70273 * 17 8 6 41 41 H 1.08523 * 108.42129 * 269.90520 * 17 8 6 42 42 H 0.97006 * 119.99689 * 179.97438 * 22 21 19 43 43 H 1.08998 * 117.50306 * 214.97530 * 27 5 2 44 44 H 1.09007 * 117.49862 * 359.97438 * 27 5 2 45 45 H 1.08999 * 117.50009 * 359.97139 * 28 5 2 46 46 H 1.08995 * 117.49823 * 144.99906 * 28 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 9 1.9964 1.3189 0.0000 4 9 1.9963 -0.6595 -1.1424 5 6 2.0401 -0.7213 1.2492 6 6 1.6501 -0.0977 2.5646 7 8 0.7036 -0.5334 3.1852 8 7 2.3535 0.9445 3.0514 9 6 3.5435 1.4085 2.3936 10 6 4.8281 0.8967 3.0209 11 6 5.1636 1.4495 4.3773 12 1 6.1038 1.0461 4.7621 13 6 5.2022 2.9873 4.2883 14 6 3.7237 3.3982 4.4432 15 6 3.0593 2.1991 5.0709 16 1 2.6977 2.4952 6.0692 17 6 1.8535 1.6237 4.3165 18 7 4.0306 1.0892 5.2949 19 6 3.9221 0.0195 6.1247 20 1 4.7213 -0.7050 6.1792 21 6 2.7842 -0.1426 6.9030 22 7 1.8101 0.7400 6.8363 23 14 2.6353 -1.6134 8.0449 24 1 3.7444 -1.5879 9.0321 25 1 1.3352 -1.5552 8.7602 26 1 2.7082 -2.8660 7.2507 27 6 2.1408 -2.2469 1.1930 28 6 3.4113 -1.3948 1.1657 29 1 -0.3633 0.4481 0.9249 30 1 -0.3633 0.5769 -0.8504 31 1 -0.3633 -1.0249 -0.0744 32 1 3.5661 2.4897 2.3389 33 1 3.5213 1.0405 1.3546 34 1 4.7611 -0.1941 3.0887 35 1 5.6509 1.1262 2.3339 36 1 5.8037 3.4084 5.0962 37 1 5.5920 3.3117 3.3218 38 1 3.2801 3.6649 3.4894 39 1 3.6558 4.2654 5.1150 40 1 1.3471 0.8852 4.9278 41 1 1.1786 2.4244 4.0320 42 1 1.0147 0.6265 7.3799 43 1 1.9249 -2.7997 2.1073 44 1 1.8432 -2.7371 0.2659 45 1 3.9498 -1.3245 0.2206 46 1 4.0313 -1.3869 2.0621 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001045849371.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:53:08 Heat of formation + Delta-G solvation = -53.501244 kcal Electronic energy + Delta-G solvation = -31867.454156 eV Core-core repulsion = 27623.477440 eV Total energy + Delta-G solvation = -4243.976716 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 328.170 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -49.03053 -47.00898 -40.01607 -38.35757 -36.17492 -34.12895 -32.99054 -31.48553 -31.22031 -29.39050 -27.42395 -25.94001 -24.88286 -23.67661 -22.73251 -22.48854 -21.24488 -19.54595 -19.32695 -18.17315 -17.35655 -17.23317 -16.89820 -16.27014 -15.49977 -15.49310 -14.87091 -14.52604 -14.26100 -14.16062 -13.86684 -13.74298 -13.31795 -13.19542 -13.02418 -12.73501 -12.55241 -12.43468 -12.23426 -12.09815 -11.94882 -11.64061 -11.51334 -11.46530 -11.20429 -11.13869 -10.84316 -10.77214 -10.69655 -10.47642 -10.19540 -10.13889 -9.89352 -9.74360 -9.48468 -9.32315 -9.00742 -8.57139 -7.68251 -6.85119 -5.67561 -3.02029 3.02482 3.37368 3.42900 3.47683 3.49441 3.65276 3.85867 4.13693 4.42773 4.48727 4.59431 4.81678 4.96680 5.09190 5.26719 5.31986 5.41214 5.46896 5.50882 5.57810 5.62113 5.63850 5.71366 5.72595 5.88520 5.89851 5.91607 6.03042 6.14441 6.15647 6.24751 6.29225 6.51392 6.53822 6.62860 6.73537 6.81202 7.00701 7.07076 7.24980 7.47809 7.63501 7.97295 8.20915 8.34253 8.88778 9.18039 9.76994 10.55505 11.39867 Molecular weight = 328.17amu Principal moments of inertia in cm(-1) A = 0.013924 B = 0.005926 C = 0.005015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2010.382068 B = 4723.671887 C = 5581.887056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.334 3.666 3 F -0.191 7.191 4 F -0.198 7.198 5 C -0.214 4.214 6 C 0.551 3.449 7 O -0.533 6.533 8 N -0.577 5.577 9 C 0.116 3.884 10 C -0.142 4.142 11 C 0.145 3.855 12 H 0.060 0.940 13 C -0.125 4.125 14 C -0.123 4.123 15 C 0.147 3.853 16 H 0.094 0.906 17 C 0.122 3.878 18 N -0.581 5.581 19 C -0.200 4.200 20 H 0.076 0.924 21 C -0.013 4.013 22 N -0.919 5.919 23 Si 0.913 3.087 24 H -0.288 1.288 25 H -0.290 1.290 26 H -0.288 1.288 27 C -0.128 4.128 28 C -0.153 4.153 29 H 0.093 0.907 30 H 0.079 0.921 31 H 0.090 0.910 32 H 0.069 0.931 33 H 0.063 0.937 34 H 0.056 0.944 35 H 0.049 0.951 36 H 0.059 0.941 37 H 0.060 0.940 38 H 0.061 0.939 39 H 0.054 0.946 40 H 0.144 0.856 41 H 0.026 0.974 42 H 0.254 0.746 43 H 0.111 0.889 44 H 0.106 0.894 45 H 0.105 0.895 46 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.344 1.626 -13.575 13.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C 0.298 3.702 3 F -0.172 7.172 4 F -0.179 7.179 5 C -0.218 4.218 6 C 0.335 3.665 7 O -0.411 6.411 8 N -0.308 5.308 9 C -0.009 4.009 10 C -0.183 4.183 11 C 0.038 3.962 12 H 0.078 0.922 13 C -0.164 4.164 14 C -0.161 4.161 15 C 0.040 3.960 16 H 0.111 0.889 17 C 0.002 3.998 18 N -0.305 5.305 19 C -0.328 4.328 20 H 0.094 0.906 21 C -0.208 4.208 22 N -0.568 5.568 23 Si 0.745 3.255 24 H -0.215 1.215 25 H -0.216 1.216 26 H -0.215 1.215 27 C -0.166 4.166 28 C -0.190 4.190 29 H 0.112 0.888 30 H 0.098 0.902 31 H 0.109 0.891 32 H 0.087 0.913 33 H 0.081 0.919 34 H 0.075 0.925 35 H 0.067 0.933 36 H 0.078 0.922 37 H 0.079 0.921 38 H 0.080 0.920 39 H 0.073 0.927 40 H 0.161 0.839 41 H 0.044 0.956 42 H 0.064 0.936 43 H 0.129 0.871 44 H 0.124 0.876 45 H 0.124 0.876 46 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 1.733 1.305 -13.033 13.213 hybrid contribution 0.148 -0.638 0.270 0.709 sum 1.881 0.666 -12.764 12.919 Atomic orbital electron populations 1.22688 0.90742 1.05637 1.05421 1.20050 0.93776 0.75032 0.81356 1.92995 1.90373 1.37216 1.96609 1.92980 1.90725 1.81113 1.53080 1.22446 1.05941 0.98289 0.95104 1.18756 0.83430 0.80137 0.84198 1.90683 1.29567 1.61365 1.59449 1.48618 1.23960 1.30754 1.27502 1.20667 0.85206 0.99752 0.95300 1.21995 0.96440 1.01554 0.98274 1.21164 0.92750 0.92430 0.89823 0.92226 1.22472 0.96613 0.96923 1.00343 1.21922 0.95903 0.98214 1.00107 1.21046 0.89096 0.86501 0.99307 0.88850 1.24339 0.96321 0.97257 0.81875 1.45249 1.14633 1.24661 1.45957 1.18648 1.01657 0.98573 1.13930 0.90588 1.24604 0.96508 0.98895 1.00763 1.69643 1.08123 1.36061 1.42975 0.86158 0.76769 0.82134 0.80483 1.21545 1.21606 1.21538 1.23020 1.00001 0.88979 1.04580 1.23329 0.89767 1.01038 1.04823 0.88810 0.90162 0.89075 0.91280 0.91891 0.92506 0.93266 0.92234 0.92124 0.92039 0.92685 0.83926 0.95554 0.93569 0.87066 0.87608 0.87628 0.86677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.37 9.28 37.16 0.34 -2.02 16 2 C 0.33 4.78 2.06 -26.73 -0.06 4.73 16 3 F -0.19 -2.92 14.59 2.25 0.03 -2.89 16 4 F -0.20 -2.67 15.63 2.25 0.04 -2.64 16 5 C -0.21 -3.40 0.76 -155.66 -0.12 -3.52 16 6 C 0.55 11.22 5.89 -10.96 -0.06 11.16 16 7 O -0.53 -12.87 16.41 5.56 0.09 -12.78 16 8 N -0.58 -11.66 2.90 -171.78 -0.50 -12.16 16 9 C 0.12 1.98 4.02 -6.13 -0.02 1.95 16 10 C -0.14 -2.41 4.66 -28.68 -0.13 -2.54 16 11 C 0.15 2.74 4.00 -66.66 -0.27 2.47 16 12 H 0.06 1.12 8.17 -51.76 -0.42 0.70 16 13 C -0.12 -2.02 6.13 -25.52 -0.16 -2.17 16 14 C -0.12 -2.16 5.60 -27.20 -0.15 -2.32 16 15 C 0.15 3.24 2.18 -67.33 -0.15 3.09 16 16 H 0.09 2.40 6.52 -51.23 -0.33 2.07 16 17 C 0.12 2.78 5.63 -0.67 0.00 2.77 16 18 N -0.58 -13.60 2.55 -154.84 -0.40 -13.99 16 19 C -0.20 -5.27 10.35 -15.57 -0.16 -5.44 16 20 H 0.08 1.98 7.83 -52.49 -0.41 1.56 16 21 C -0.01 -0.35 5.37 -17.43 -0.09 -0.44 16 22 N -0.92 -25.47 7.95 55.49 0.44 -25.03 16 23 Si 0.91 22.29 29.55 -169.99 -5.02 17.26 16 24 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 25 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 26 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 27 C -0.13 -1.81 9.62 -26.73 -0.26 -2.07 16 28 C -0.15 -2.16 7.95 -26.73 -0.21 -2.37 16 29 H 0.09 1.36 7.42 -51.93 -0.39 0.97 16 30 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.09 1.04 8.14 -51.93 -0.42 0.61 16 32 H 0.07 1.14 5.08 -52.33 -0.27 0.87 16 33 H 0.06 1.00 3.86 -51.22 -0.20 0.81 16 34 H 0.06 1.05 5.78 -51.65 -0.30 0.75 16 35 H 0.05 0.69 8.19 -51.58 -0.42 0.27 16 36 H 0.06 0.94 8.16 -51.83 -0.42 0.52 16 37 H 0.06 0.83 7.96 -51.85 -0.41 0.42 16 38 H 0.06 1.00 6.06 -52.20 -0.32 0.68 16 39 H 0.05 0.91 8.22 -51.41 -0.42 0.49 16 40 H 0.14 3.89 4.60 -52.26 -0.24 3.65 16 41 H 0.03 0.57 8.10 -52.20 -0.42 0.15 16 42 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 43 H 0.11 1.72 8.14 -51.93 -0.42 1.30 16 44 H 0.11 1.23 7.83 -51.92 -0.41 0.82 16 45 H 0.11 1.29 7.73 -51.93 -0.40 0.89 16 46 H 0.12 1.79 5.65 -51.93 -0.29 1.50 16 LS Contribution 344.29 15.07 5.19 5.19 Total: -1.00 -29.56 344.29 -8.11 -37.67 By element: Atomic # 1 Polarization: 12.56 SS G_CDS: -6.48 Total: 6.08 kcal Atomic # 6 Polarization: 4.78 SS G_CDS: -1.50 Total: 3.28 kcal Atomic # 7 Polarization: -50.72 SS G_CDS: -0.45 Total: -51.18 kcal Atomic # 8 Polarization: -12.87 SS G_CDS: 0.09 Total: -12.78 kcal Atomic # 9 Polarization: -5.59 SS G_CDS: 0.07 Total: -5.53 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -5.02 Total: 17.26 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -29.56 -8.11 -37.67 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045849371.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.834 kcal (2) G-P(sol) polarization free energy of solvation -29.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.667 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds