Wall clock time and date at job start Tue Mar 31 2020 14:53:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 F 1.39896 * 109.47447 * 2 1 4 4 F 1.39903 * 109.46776 * 240.00232 * 2 1 3 5 5 C 1.53004 * 109.47422 * 120.00313 * 2 1 3 6 6 C 1.50702 * 115.54701 * 298.24709 * 5 2 1 7 7 O 1.21279 * 120.00107 * 98.19526 * 6 5 2 8 8 N 1.34830 * 119.99736 * 278.19034 * 6 5 2 9 9 C 1.43669 * 121.09595 * 354.78280 * 8 6 5 10 10 C 1.51845 * 113.75474 * 261.04983 * 9 8 6 11 11 C 1.50271 * 115.96168 * 290.32725 * 10 9 8 12 12 H 1.09297 * 111.96938 * 180.58759 * 11 10 9 13 13 C 1.54090 * 108.69592 * 304.25648 * 11 10 9 14 14 C 1.54234 * 103.65650 * 83.70047 * 13 11 10 15 15 C 1.50782 * 104.61442 * 19.12182 * 14 13 11 16 16 H 1.10228 * 107.93209 * 115.70779 * 15 14 13 17 17 C 1.52046 * 118.30679 * 174.59873 * 8 6 5 18 18 N 1.49177 * 111.55088 * 359.51245 * 15 14 13 19 19 C 1.35819 * 128.73332 * 161.02176 * 18 15 14 20 20 H 1.08001 * 120.00101 * 180.24408 * 19 18 15 21 21 C 1.38815 * 120.00098 * 0.23901 * 19 18 15 22 22 N 1.31619 * 119.99697 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 120.00172 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.46946 * 59.99906 * 23 21 19 25 25 H 1.48501 * 109.47151 * 179.97438 * 23 21 19 26 26 H 1.48496 * 109.46886 * 300.00013 * 23 21 19 27 27 C 1.52996 * 117.51769 * 83.94315 * 5 2 1 28 28 C 1.52995 * 117.49930 * 152.57726 * 5 2 1 29 29 H 1.09006 * 109.47052 * 295.84934 * 1 2 3 30 30 H 1.08996 * 109.47210 * 55.84581 * 1 2 3 31 31 H 1.08998 * 109.47148 * 175.84927 * 1 2 3 32 32 H 1.08283 * 111.27812 * 136.31390 * 9 8 6 33 33 H 1.10245 * 107.87895 * 19.68613 * 9 8 6 34 34 H 1.09492 * 108.03129 * 52.85711 * 10 9 8 35 35 H 1.09613 * 107.79374 * 168.23173 * 10 9 8 36 36 H 1.09178 * 110.85081 * 202.32736 * 13 11 10 37 37 H 1.09144 * 110.90016 * 324.97389 * 13 11 10 38 38 H 1.08518 * 111.66030 * 257.29172 * 14 13 11 39 39 H 1.09907 * 109.32484 * 137.16518 * 14 13 11 40 40 H 1.08415 * 108.56944 * 30.70273 * 17 8 6 41 41 H 1.08523 * 108.42129 * 269.90520 * 17 8 6 42 42 H 0.97006 * 119.99689 * 179.97438 * 22 21 19 43 43 H 1.08998 * 117.50306 * 214.97530 * 27 5 2 44 44 H 1.09007 * 117.49862 * 359.97438 * 27 5 2 45 45 H 1.08999 * 117.50009 * 359.97139 * 28 5 2 46 46 H 1.08995 * 117.49823 * 144.99906 * 28 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 9 1.9964 1.3189 0.0000 4 9 1.9963 -0.6595 -1.1424 5 6 2.0401 -0.7213 1.2492 6 6 1.6501 -0.0977 2.5646 7 8 0.7036 -0.5334 3.1852 8 7 2.3535 0.9445 3.0514 9 6 3.5435 1.4085 2.3936 10 6 4.8281 0.8967 3.0209 11 6 5.1636 1.4495 4.3773 12 1 6.1038 1.0461 4.7621 13 6 5.2022 2.9873 4.2883 14 6 3.7237 3.3982 4.4432 15 6 3.0593 2.1991 5.0709 16 1 2.6977 2.4952 6.0692 17 6 1.8535 1.6237 4.3165 18 7 4.0306 1.0892 5.2949 19 6 3.9221 0.0195 6.1247 20 1 4.7213 -0.7050 6.1792 21 6 2.7842 -0.1426 6.9030 22 7 1.8101 0.7400 6.8363 23 14 2.6353 -1.6134 8.0449 24 1 3.7444 -1.5879 9.0321 25 1 1.3352 -1.5552 8.7602 26 1 2.7082 -2.8660 7.2507 27 6 2.1408 -2.2469 1.1930 28 6 3.4113 -1.3948 1.1657 29 1 -0.3633 0.4481 0.9249 30 1 -0.3633 0.5769 -0.8504 31 1 -0.3633 -1.0249 -0.0744 32 1 3.5661 2.4897 2.3389 33 1 3.5213 1.0405 1.3546 34 1 4.7611 -0.1941 3.0887 35 1 5.6509 1.1262 2.3339 36 1 5.8037 3.4084 5.0962 37 1 5.5920 3.3117 3.3218 38 1 3.2801 3.6649 3.4894 39 1 3.6558 4.2654 5.1150 40 1 1.3471 0.8852 4.9278 41 1 1.1786 2.4244 4.0320 42 1 1.0147 0.6265 7.3799 43 1 1.9249 -2.7997 2.1073 44 1 1.8432 -2.7371 0.2659 45 1 3.9498 -1.3245 0.2206 46 1 4.0313 -1.3869 2.0621 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001045849371.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:53:07 Heat of formation + Delta-G solvation = -69.892715 kcal Electronic energy + Delta-G solvation = -31868.164944 eV Core-core repulsion = 27623.477440 eV Total energy + Delta-G solvation = -4244.687504 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 328.170 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -50.14306 -48.11734 -41.52908 -39.86967 -37.57326 -35.76441 -34.80359 -33.05442 -32.29326 -31.21998 -28.95682 -27.53181 -26.28125 -25.34970 -24.15421 -23.63464 -22.58015 -21.11427 -20.98968 -19.49143 -18.71952 -18.62705 -18.43826 -17.38513 -17.08232 -16.82549 -16.73413 -16.02279 -15.92465 -15.64796 -15.38454 -14.87566 -14.60123 -14.47566 -14.33526 -14.19955 -14.10433 -13.68638 -13.54826 -13.50585 -13.30238 -13.10472 -13.01213 -12.84080 -12.72558 -12.65201 -12.62101 -12.39138 -12.26353 -12.03675 -11.71788 -11.52991 -11.39526 -11.31853 -11.23736 -10.88606 -10.68430 -10.35331 -9.33253 -8.77168 -7.72342 -5.04682 1.42099 1.44842 1.49574 1.54470 2.02976 2.37952 2.51121 2.62285 3.00209 3.23526 3.38605 3.48075 3.50724 3.64073 3.85245 3.92112 3.95578 4.11313 4.12348 4.25719 4.43051 4.43706 4.52066 4.56312 4.61188 4.65073 4.73545 4.78544 4.85145 4.88594 4.91807 4.94910 5.01313 5.15353 5.17964 5.28203 5.35031 5.42737 5.48989 5.57958 5.71720 5.84963 6.08064 6.29378 6.76166 7.15243 7.33144 7.80399 8.60958 9.31495 Molecular weight = 328.17amu Principal moments of inertia in cm(-1) A = 0.013924 B = 0.005926 C = 0.005015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2010.382068 B = 4723.671887 C = 5581.887056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.341 3.659 3 F -0.196 7.196 4 F -0.187 7.187 5 C -0.225 4.225 6 C 0.542 3.458 7 O -0.585 6.585 8 N -0.578 5.578 9 C 0.110 3.890 10 C -0.138 4.138 11 C 0.136 3.864 12 H 0.060 0.940 13 C -0.112 4.112 14 C -0.118 4.118 15 C 0.157 3.843 16 H 0.046 0.954 17 C 0.122 3.878 18 N -0.602 5.602 19 C -0.199 4.199 20 H 0.074 0.926 21 C -0.066 4.066 22 N -0.932 5.932 23 Si 0.959 3.041 24 H -0.278 1.278 25 H -0.301 1.301 26 H -0.294 1.294 27 C -0.122 4.122 28 C -0.138 4.138 29 H 0.068 0.932 30 H 0.104 0.896 31 H 0.103 0.897 32 H 0.084 0.916 33 H 0.081 0.919 34 H 0.038 0.962 35 H 0.093 0.907 36 H 0.063 0.937 37 H 0.101 0.899 38 H 0.081 0.919 39 H 0.064 0.936 40 H 0.098 0.902 41 H 0.028 0.972 42 H 0.240 0.760 43 H 0.089 0.911 44 H 0.138 0.862 45 H 0.136 0.864 46 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.528 2.224 -16.781 17.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C 0.305 3.695 3 F -0.177 7.177 4 F -0.168 7.168 5 C -0.229 4.229 6 C 0.329 3.671 7 O -0.466 6.466 8 N -0.307 5.307 9 C -0.013 4.013 10 C -0.178 4.178 11 C 0.031 3.969 12 H 0.078 0.922 13 C -0.150 4.150 14 C -0.156 4.156 15 C 0.051 3.949 16 H 0.064 0.936 17 C 0.001 3.999 18 N -0.326 5.326 19 C -0.329 4.329 20 H 0.092 0.908 21 C -0.258 4.258 22 N -0.583 5.583 23 Si 0.791 3.209 24 H -0.205 1.205 25 H -0.228 1.228 26 H -0.221 1.221 27 C -0.159 4.159 28 C -0.174 4.174 29 H 0.087 0.913 30 H 0.123 0.877 31 H 0.121 0.879 32 H 0.102 0.898 33 H 0.100 0.900 34 H 0.056 0.944 35 H 0.111 0.889 36 H 0.082 0.918 37 H 0.119 0.881 38 H 0.099 0.901 39 H 0.083 0.917 40 H 0.116 0.884 41 H 0.047 0.953 42 H 0.050 0.950 43 H 0.107 0.893 44 H 0.156 0.844 45 H 0.154 0.846 46 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 3.982 1.922 -16.275 16.865 hybrid contribution -0.505 -0.840 1.263 1.599 sum 3.477 1.082 -15.011 15.447 Atomic orbital electron populations 1.22696 0.89780 1.06729 1.05163 1.19940 0.94344 0.74532 0.80728 1.92981 1.90494 1.37603 1.96606 1.93000 1.90686 1.80886 1.52241 1.22277 1.07925 0.99293 0.93430 1.19460 0.82562 0.79672 0.85450 1.90650 1.31747 1.62819 1.61360 1.48620 1.24947 1.30631 1.26524 1.20897 0.83908 1.00709 0.95790 1.21900 0.97698 1.00210 0.97981 1.21480 0.91072 0.94674 0.89707 0.92236 1.22437 0.95435 0.94364 1.02809 1.21843 0.96677 0.96131 1.00910 1.20979 0.89007 0.87623 0.97337 0.93596 1.23856 0.96739 0.96252 0.83051 1.45440 1.16574 1.24189 1.46350 1.18833 1.01083 0.99288 1.13680 0.90779 1.25195 0.96981 1.00941 1.02711 1.69894 1.07936 1.37044 1.43385 0.85413 0.76282 0.79942 0.79278 1.20458 1.22752 1.22094 1.23110 0.99904 0.87803 1.05094 1.23393 0.89002 0.99515 1.05520 0.91303 0.87686 0.87866 0.89795 0.90042 0.94378 0.88872 0.91846 0.88052 0.90077 0.91744 0.88399 0.95350 0.95036 0.89264 0.84443 0.84644 0.88255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -4.38 9.28 71.98 0.67 -3.71 16 2 C 0.34 8.84 2.06 30.60 0.06 8.90 16 3 F -0.20 -5.39 14.59 44.97 0.66 -4.74 16 4 F -0.19 -4.29 15.63 44.97 0.70 -3.59 16 5 C -0.23 -6.82 0.76 -52.93 -0.04 -6.86 16 6 C 0.54 22.38 5.89 87.65 0.52 22.90 16 7 O -0.58 -29.69 16.41 -3.03 -0.05 -29.74 16 8 N -0.58 -23.25 2.90 -815.75 -2.36 -25.61 16 9 C 0.11 3.47 4.02 86.52 0.35 3.82 16 10 C -0.14 -4.23 4.66 29.33 0.14 -4.10 16 11 C 0.14 4.81 4.00 43.76 0.17 4.99 16 12 H 0.06 2.11 8.17 -2.23 -0.02 2.09 16 13 C -0.11 -3.20 6.13 31.38 0.19 -3.00 16 14 C -0.12 -3.87 5.60 30.29 0.17 -3.70 16 15 C 0.16 7.02 2.18 43.90 0.10 7.12 16 16 H 0.05 2.48 6.52 -1.73 -0.01 2.47 16 17 C 0.12 5.79 5.63 85.42 0.48 6.27 16 18 N -0.60 -28.33 2.55 -643.80 -1.64 -29.97 16 19 C -0.20 -10.78 10.35 84.21 0.87 -9.91 16 20 H 0.07 3.93 7.83 -2.91 -0.02 3.90 16 21 C -0.07 -3.72 5.37 84.86 0.46 -3.26 16 22 N -0.93 -54.80 7.95 21.65 0.17 -54.63 16 23 Si 0.96 47.66 29.55 68.60 2.03 49.69 16 24 H -0.28 -13.19 7.11 99.48 0.71 -12.48 16 25 H -0.30 -15.32 7.11 99.48 0.71 -14.62 16 26 H -0.29 -14.64 7.11 99.48 0.71 -13.94 16 27 C -0.12 -3.23 9.62 30.59 0.29 -2.94 16 28 C -0.14 -3.52 7.95 30.59 0.24 -3.28 16 29 H 0.07 1.99 7.42 -2.38 -0.02 1.97 16 30 H 0.10 1.91 8.14 -2.39 -0.02 1.89 16 31 H 0.10 2.14 8.14 -2.39 -0.02 2.13 16 32 H 0.08 2.41 5.08 -2.76 -0.01 2.40 16 33 H 0.08 2.30 3.86 -1.72 -0.01 2.29 16 34 H 0.04 1.33 5.78 -2.13 -0.01 1.31 16 35 H 0.09 2.11 8.19 -2.06 -0.02 2.09 16 36 H 0.06 1.78 8.16 -2.29 -0.02 1.76 16 37 H 0.10 2.14 7.96 -2.31 -0.02 2.12 16 38 H 0.08 2.36 6.06 -2.64 -0.02 2.35 16 39 H 0.06 2.01 8.22 -1.90 -0.02 1.99 16 40 H 0.10 5.69 4.60 -2.69 -0.01 5.67 16 41 H 0.03 1.28 8.10 -2.64 -0.02 1.26 16 42 H 0.24 14.28 8.31 -92.70 -0.77 13.50 16 43 H 0.09 2.78 8.14 -2.39 -0.02 2.76 16 44 H 0.14 2.74 7.83 -2.38 -0.02 2.73 16 45 H 0.14 2.68 7.73 -2.39 -0.02 2.66 16 46 H 0.10 2.92 5.65 -2.39 -0.01 2.91 16 Total: -1.00 -69.30 344.29 5.19 -64.11 By element: Atomic # 1 Polarization: 20.21 SS G_CDS: 1.02 Total: 21.23 kcal Atomic # 6 Polarization: 8.57 SS G_CDS: 4.67 Total: 13.24 kcal Atomic # 7 Polarization: -106.38 SS G_CDS: -3.84 Total: -110.21 kcal Atomic # 8 Polarization: -29.69 SS G_CDS: -0.05 Total: -29.74 kcal Atomic # 9 Polarization: -9.68 SS G_CDS: 1.36 Total: -8.32 kcal Atomic # 14 Polarization: 47.66 SS G_CDS: 2.03 Total: 49.69 kcal Total: -69.30 5.19 -64.11 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045849371.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.779 kcal (2) G-P(sol) polarization free energy of solvation -69.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.114 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds