Wall clock time and date at job start Tue Mar 31 2020 14:52:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 F 1.39894 * 109.47380 * 2 1 4 4 F 1.39903 * 109.46657 * 239.99963 * 2 1 3 5 5 C 1.53005 * 109.47176 * 120.00571 * 2 1 3 6 6 C 1.50697 * 115.54648 * 294.36552 * 5 2 1 7 7 O 1.21286 * 119.99930 * 109.99416 * 6 5 2 8 8 N 1.34775 * 120.00314 * 289.99615 * 6 5 2 9 9 C 1.47850 * 122.22470 * 355.51851 * 8 6 5 10 10 C 1.52722 * 111.06024 * 232.51061 * 9 8 6 11 11 C 1.53879 * 111.52003 * 311.46260 * 10 9 8 12 12 C 1.50817 * 107.40958 * 56.71083 * 11 10 9 13 13 H 1.08998 * 107.80496 * 51.23924 * 12 11 10 14 14 C 1.45729 * 122.22975 * 175.53892 * 8 6 5 15 15 H 1.08997 * 111.07189 * 241.38379 * 14 8 6 16 16 C 1.53430 * 116.36312 * 9.88480 * 14 8 6 17 17 C 1.55469 * 101.67102 * 152.71924 * 16 14 8 18 18 N 1.45030 * 119.37406 * 175.79589 * 12 11 10 19 19 C 1.36936 * 126.55797 * 331.77995 * 18 12 11 20 20 H 1.08002 * 120.00078 * 8.75518 * 19 18 12 21 21 C 1.38812 * 119.99754 * 188.75497 * 19 18 12 22 22 N 1.31617 * 120.00118 * 35.84906 * 21 19 18 23 23 Si 1.86804 * 119.99969 * 215.85564 * 21 19 18 24 24 H 1.48504 * 109.47012 * 359.97438 * 23 21 19 25 25 H 1.48499 * 109.47030 * 119.99635 * 23 21 19 26 26 H 1.48499 * 109.47119 * 240.00101 * 23 21 19 27 27 C 1.52996 * 117.50079 * 80.03510 * 5 2 1 28 28 C 1.53000 * 117.49764 * 148.69865 * 5 2 1 29 29 H 1.08998 * 109.46800 * 305.23427 * 1 2 3 30 30 H 1.08998 * 109.46939 * 65.23198 * 1 2 3 31 31 H 1.09001 * 109.47407 * 185.23918 * 1 2 3 32 32 H 1.09003 * 109.16319 * 352.91099 * 9 8 6 33 33 H 1.08993 * 109.16491 * 112.10487 * 9 8 6 34 34 H 1.08991 * 109.07321 * 71.98761 * 10 9 8 35 35 H 1.08997 * 109.06920 * 191.00691 * 10 9 8 36 36 H 1.08995 * 109.88703 * 176.39059 * 11 10 9 37 37 H 1.09002 * 109.88111 * 297.40222 * 11 10 9 38 38 H 1.09007 * 110.99253 * 34.62101 * 16 14 8 39 39 H 1.09007 * 110.99012 * 270.81616 * 16 14 8 40 40 H 1.08995 * 109.96237 * 218.01969 * 17 16 14 41 41 H 1.09000 * 109.99293 * 96.79679 * 17 16 14 42 42 H 0.96992 * 119.99941 * 6.76851 * 22 21 19 43 43 H 1.08995 * 117.49971 * 215.00039 * 27 5 2 44 44 H 1.08999 * 117.50180 * 0.02901 * 27 5 2 45 45 H 1.08995 * 117.50201 * 359.97438 * 28 5 2 46 46 H 1.09006 * 117.49316 * 144.97532 * 28 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 9 1.9964 1.3189 0.0000 4 9 1.9963 -0.6595 -1.1423 5 6 2.0401 -0.7214 1.2492 6 6 1.7278 -0.0488 2.5611 7 8 0.9227 -0.5449 3.3205 8 7 2.3432 1.1042 2.8906 9 6 3.4019 1.7013 2.0488 10 6 4.6545 1.9977 2.8707 11 6 4.3127 2.7477 4.1701 12 6 3.3196 1.9045 4.9300 13 1 3.7260 0.8957 5.0030 14 6 2.0096 1.8450 4.1003 15 1 1.6348 2.8398 3.8598 16 6 1.0907 1.1345 5.1028 17 6 1.5164 1.7964 6.4436 18 7 2.8876 2.3284 6.2479 19 6 3.6057 3.0806 7.1388 20 1 4.5364 3.5362 6.8342 21 6 3.1375 3.2575 8.4336 22 7 2.5071 2.2773 9.0451 23 14 3.4018 4.8871 9.3079 24 1 4.1321 5.8177 8.4102 25 1 2.0864 5.4752 9.6670 26 1 4.1976 4.6635 10.5415 27 6 2.0542 -2.2511 1.2254 28 6 3.3688 -1.4717 1.1386 29 1 -0.3633 0.5929 0.8394 30 1 -0.3633 0.4305 -0.9331 31 1 -0.3634 -1.0234 0.0938 32 1 3.6559 1.0073 1.2475 33 1 3.0319 2.6294 1.6133 34 1 5.1470 1.0581 3.1209 35 1 5.3341 2.6085 2.2764 36 1 5.2149 2.8890 4.7651 37 1 3.8693 3.7151 3.9341 38 1 1.2846 0.0619 5.1180 39 1 0.0424 1.3370 4.8830 40 1 1.5156 1.0542 7.2417 41 1 0.8338 2.6094 6.6911 42 1 2.4553 1.4015 8.6316 43 1 1.8377 -2.7710 2.1586 44 1 1.7005 -2.7437 0.3196 45 1 3.8795 -1.4519 0.1759 46 1 4.0173 -1.4786 2.0148 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049729419.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:52:56 Heat of formation + Delta-G solvation = -65.090347 kcal Electronic energy + Delta-G solvation = -30812.775919 eV Core-core repulsion = 26568.296662 eV Total energy + Delta-G solvation = -4244.479258 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 328.170 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -49.34554 -47.32894 -40.68817 -38.55334 -36.58193 -35.57573 -32.75276 -32.31076 -31.56620 -28.99369 -28.37890 -25.87894 -24.42797 -24.19386 -22.88551 -22.46266 -21.58521 -20.71125 -19.72869 -18.79110 -17.90786 -17.65577 -17.09973 -16.58565 -15.88632 -15.65064 -15.12906 -14.92071 -14.56375 -14.21015 -14.18275 -13.96828 -13.71114 -13.56468 -13.47509 -13.44552 -12.96604 -12.80737 -12.70806 -12.51246 -12.29982 -12.14797 -11.97579 -11.85387 -11.76679 -11.05480 -10.97025 -10.91358 -10.67573 -10.56319 -10.47842 -10.29365 -10.18187 -10.11558 -9.98631 -9.60055 -9.19295 -8.48925 -8.20150 -6.94678 -6.10813 -3.04207 2.38277 2.83957 3.14774 3.39596 3.55063 3.57895 3.71406 3.78241 3.97741 4.20740 4.24270 4.56481 4.60829 4.65365 4.83404 5.05390 5.11020 5.20738 5.21121 5.25173 5.28246 5.35058 5.38295 5.51756 5.52621 5.57434 5.58974 5.70292 5.74695 5.77188 5.91068 5.96789 6.07499 6.19229 6.30633 6.36507 6.57139 6.64212 6.73026 6.98509 7.09352 7.16138 7.54111 7.80661 8.20418 8.48618 9.03268 9.84255 10.42599 11.20890 Molecular weight = 328.17amu Principal moments of inertia in cm(-1) A = 0.024466 B = 0.003672 C = 0.003498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1144.184243 B = 7623.990279 C = 8002.369989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.333 3.667 3 F -0.190 7.190 4 F -0.195 7.195 5 C -0.219 4.219 6 C 0.559 3.441 7 O -0.521 6.521 8 N -0.586 5.586 9 C 0.112 3.888 10 C -0.131 4.131 11 C -0.114 4.114 12 C 0.162 3.838 13 H 0.013 0.987 14 C 0.117 3.883 15 H 0.083 0.917 16 C -0.122 4.122 17 C 0.136 3.864 18 N -0.589 5.589 19 C -0.343 4.343 20 H 0.070 0.930 21 C -0.020 4.020 22 N -0.904 5.904 23 Si 1.054 2.946 24 H -0.292 1.292 25 H -0.290 1.290 26 H -0.296 1.296 27 C -0.123 4.123 28 C -0.148 4.148 29 H 0.090 0.910 30 H 0.083 0.917 31 H 0.092 0.908 32 H 0.083 0.917 33 H 0.071 0.929 34 H 0.061 0.939 35 H 0.074 0.926 36 H 0.068 0.932 37 H 0.063 0.937 38 H 0.091 0.909 39 H 0.063 0.937 40 H 0.043 0.957 41 H 0.033 0.967 42 H 0.270 0.730 43 H 0.115 0.885 44 H 0.110 0.890 45 H 0.112 0.888 46 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.504 -6.030 -21.506 22.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C 0.297 3.703 3 F -0.170 7.170 4 F -0.176 7.176 5 C -0.223 4.223 6 C 0.344 3.656 7 O -0.397 6.397 8 N -0.317 5.317 9 C -0.010 4.010 10 C -0.170 4.170 11 C -0.152 4.152 12 C 0.053 3.947 13 H 0.030 0.970 14 C 0.013 3.987 15 H 0.101 0.899 16 C -0.160 4.160 17 C 0.011 3.989 18 N -0.315 5.315 19 C -0.470 4.470 20 H 0.088 0.912 21 C -0.223 4.223 22 N -0.544 5.544 23 Si 0.883 3.117 24 H -0.219 1.219 25 H -0.217 1.217 26 H -0.224 1.224 27 C -0.160 4.160 28 C -0.185 4.185 29 H 0.109 0.891 30 H 0.102 0.898 31 H 0.111 0.889 32 H 0.101 0.899 33 H 0.089 0.911 34 H 0.080 0.920 35 H 0.093 0.907 36 H 0.087 0.913 37 H 0.082 0.918 38 H 0.109 0.891 39 H 0.082 0.918 40 H 0.061 0.939 41 H 0.052 0.948 42 H 0.081 0.919 43 H 0.133 0.867 44 H 0.128 0.872 45 H 0.130 0.870 46 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -1.193 -5.361 -19.657 20.410 hybrid contribution 0.599 -0.592 -1.549 1.763 sum -0.594 -5.952 -21.206 22.034 Atomic orbital electron populations 1.22708 0.90596 1.06004 1.05325 1.20070 0.93875 0.75102 0.81266 1.93040 1.90334 1.37065 1.96601 1.93003 1.90652 1.81061 1.52841 1.22439 1.07655 0.97586 0.94607 1.18809 0.81010 0.80358 0.85393 1.90710 1.34829 1.63674 1.50534 1.47869 1.37199 1.22406 1.24271 1.21935 0.87407 0.98976 0.92701 1.21959 0.96772 1.01029 0.97231 1.21345 1.00399 0.98818 0.94684 1.20532 0.91843 0.95778 0.86529 0.96965 1.22360 0.98780 0.94413 0.83166 0.89898 1.22822 0.97843 1.01330 0.94012 1.21886 0.86341 0.96497 0.94194 1.44110 1.12524 1.62508 1.12330 1.19638 1.07374 1.26810 0.93159 0.91194 1.25547 0.99842 1.03783 0.93103 1.70729 1.44819 1.01827 1.37016 0.83741 0.76135 0.76546 0.75237 1.21852 1.21710 1.22405 1.23076 0.99184 0.88631 1.05131 1.23216 0.89865 1.00466 1.04943 0.89109 0.89772 0.88889 0.89919 0.91112 0.91987 0.90732 0.91322 0.91799 0.89099 0.91797 0.93930 0.94841 0.91857 0.86684 0.87155 0.86961 0.87252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.71 9.19 37.16 0.34 -1.37 16 2 C 0.33 3.49 2.05 -26.73 -0.05 3.43 16 3 F -0.19 -2.20 13.14 2.25 0.03 -2.17 16 4 F -0.19 -1.97 15.65 2.25 0.04 -1.94 16 5 C -0.22 -2.47 0.75 -155.66 -0.12 -2.58 16 6 C 0.56 8.41 6.36 -10.99 -0.07 8.34 16 7 O -0.52 -9.36 13.56 5.55 0.08 -9.28 16 8 N -0.59 -9.03 2.90 -164.19 -0.48 -9.50 16 9 C 0.11 1.43 4.50 -3.44 -0.02 1.42 16 10 C -0.13 -1.73 5.92 -26.42 -0.16 -1.89 16 11 C -0.11 -1.99 5.41 -27.37 -0.15 -2.14 16 12 C 0.16 3.39 2.56 -68.66 -0.18 3.22 16 13 H 0.01 0.29 8.01 -51.93 -0.42 -0.12 16 14 C 0.12 2.17 3.32 -66.97 -0.22 1.94 16 15 H 0.08 1.55 8.14 -51.93 -0.42 1.12 16 16 C -0.12 -2.47 5.10 -25.20 -0.13 -2.60 16 17 C 0.14 3.31 5.91 -1.70 -0.01 3.30 16 18 N -0.59 -15.00 3.30 -163.64 -0.54 -15.54 16 19 C -0.34 -9.61 9.65 -15.06 -0.15 -9.76 16 20 H 0.07 1.94 7.48 -52.49 -0.39 1.55 16 21 C -0.02 -0.58 5.09 -17.43 -0.09 -0.67 16 22 N -0.90 -27.55 12.93 55.49 0.72 -26.83 16 23 Si 1.05 25.52 30.04 -169.99 -5.11 20.41 16 24 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 25 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 26 H -0.30 -7.14 7.11 56.52 0.40 -6.74 16 27 C -0.12 -1.15 9.53 -26.69 -0.25 -1.41 16 28 C -0.15 -1.39 8.59 -26.69 -0.23 -1.62 16 29 H 0.09 0.93 7.88 -51.93 -0.41 0.52 16 30 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.08 0.93 4.64 -51.93 -0.24 0.69 16 33 H 0.07 0.87 7.65 -51.93 -0.40 0.48 16 34 H 0.06 0.82 8.13 -51.93 -0.42 0.40 16 35 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 36 H 0.07 1.28 7.73 -51.93 -0.40 0.88 16 37 H 0.06 1.11 8.12 -51.93 -0.42 0.69 16 38 H 0.09 1.94 6.06 -51.92 -0.31 1.63 16 39 H 0.06 1.22 8.14 -51.92 -0.42 0.80 16 40 H 0.04 1.13 6.12 -51.93 -0.32 0.81 16 41 H 0.03 0.86 8.14 -51.93 -0.42 0.43 16 42 H 0.27 8.32 6.21 -40.82 -0.25 8.06 16 43 H 0.11 1.18 8.08 -51.93 -0.42 0.76 16 44 H 0.11 0.82 7.95 -51.93 -0.41 0.41 16 45 H 0.11 0.89 7.62 -51.93 -0.40 0.50 16 46 H 0.11 1.08 8.14 -51.93 -0.42 0.65 16 LS Contribution 355.43 15.07 5.36 5.36 Total: -1.00 -32.03 355.43 -8.35 -40.38 By element: Atomic # 1 Polarization: 8.47 SS G_CDS: -6.97 Total: 1.50 kcal Atomic # 6 Polarization: -0.90 SS G_CDS: -1.47 Total: -2.38 kcal Atomic # 7 Polarization: -51.58 SS G_CDS: -0.30 Total: -51.88 kcal Atomic # 8 Polarization: -9.36 SS G_CDS: 0.08 Total: -9.28 kcal Atomic # 9 Polarization: -4.17 SS G_CDS: 0.06 Total: -4.11 kcal Atomic # 14 Polarization: 25.52 SS G_CDS: -5.11 Total: 20.41 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -32.03 -8.35 -40.38 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049729419.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.711 kcal (2) G-P(sol) polarization free energy of solvation -32.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.380 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds