Wall clock time and date at job start Tue Mar 31 2020 14:52:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 F 1.39894 * 109.47380 * 2 1 4 4 F 1.39903 * 109.46657 * 239.99963 * 2 1 3 5 5 C 1.53005 * 109.47176 * 120.00571 * 2 1 3 6 6 C 1.50697 * 115.54648 * 294.36552 * 5 2 1 7 7 O 1.21286 * 119.99930 * 109.99416 * 6 5 2 8 8 N 1.34775 * 120.00314 * 289.99615 * 6 5 2 9 9 C 1.47850 * 122.22470 * 355.51851 * 8 6 5 10 10 C 1.52722 * 111.06024 * 232.51061 * 9 8 6 11 11 C 1.53879 * 111.52003 * 311.46260 * 10 9 8 12 12 C 1.50817 * 107.40958 * 56.71083 * 11 10 9 13 13 H 1.08998 * 107.80496 * 51.23924 * 12 11 10 14 14 C 1.45729 * 122.22975 * 175.53892 * 8 6 5 15 15 H 1.08997 * 111.07189 * 241.38379 * 14 8 6 16 16 C 1.53430 * 116.36312 * 9.88480 * 14 8 6 17 17 C 1.55469 * 101.67102 * 152.71924 * 16 14 8 18 18 N 1.45030 * 119.37406 * 175.79589 * 12 11 10 19 19 C 1.36936 * 126.55797 * 331.77995 * 18 12 11 20 20 H 1.08002 * 120.00078 * 8.75518 * 19 18 12 21 21 C 1.38812 * 119.99754 * 188.75497 * 19 18 12 22 22 N 1.31617 * 120.00118 * 35.84906 * 21 19 18 23 23 Si 1.86804 * 119.99969 * 215.85564 * 21 19 18 24 24 H 1.48504 * 109.47012 * 359.97438 * 23 21 19 25 25 H 1.48499 * 109.47030 * 119.99635 * 23 21 19 26 26 H 1.48499 * 109.47119 * 240.00101 * 23 21 19 27 27 C 1.52996 * 117.50079 * 80.03510 * 5 2 1 28 28 C 1.53000 * 117.49764 * 148.69865 * 5 2 1 29 29 H 1.08998 * 109.46800 * 305.23427 * 1 2 3 30 30 H 1.08998 * 109.46939 * 65.23198 * 1 2 3 31 31 H 1.09001 * 109.47407 * 185.23918 * 1 2 3 32 32 H 1.09003 * 109.16319 * 352.91099 * 9 8 6 33 33 H 1.08993 * 109.16491 * 112.10487 * 9 8 6 34 34 H 1.08991 * 109.07321 * 71.98761 * 10 9 8 35 35 H 1.08997 * 109.06920 * 191.00691 * 10 9 8 36 36 H 1.08995 * 109.88703 * 176.39059 * 11 10 9 37 37 H 1.09002 * 109.88111 * 297.40222 * 11 10 9 38 38 H 1.09007 * 110.99253 * 34.62101 * 16 14 8 39 39 H 1.09007 * 110.99012 * 270.81616 * 16 14 8 40 40 H 1.08995 * 109.96237 * 218.01969 * 17 16 14 41 41 H 1.09000 * 109.99293 * 96.79679 * 17 16 14 42 42 H 0.96992 * 119.99941 * 6.76851 * 22 21 19 43 43 H 1.08995 * 117.49971 * 215.00039 * 27 5 2 44 44 H 1.08999 * 117.50180 * 0.02901 * 27 5 2 45 45 H 1.08995 * 117.50201 * 359.97438 * 28 5 2 46 46 H 1.09006 * 117.49316 * 144.97532 * 28 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 9 1.9964 1.3189 0.0000 4 9 1.9963 -0.6595 -1.1423 5 6 2.0401 -0.7214 1.2492 6 6 1.7278 -0.0488 2.5611 7 8 0.9227 -0.5449 3.3205 8 7 2.3432 1.1042 2.8906 9 6 3.4019 1.7013 2.0488 10 6 4.6545 1.9977 2.8707 11 6 4.3127 2.7477 4.1701 12 6 3.3196 1.9045 4.9300 13 1 3.7260 0.8957 5.0030 14 6 2.0096 1.8450 4.1003 15 1 1.6348 2.8398 3.8598 16 6 1.0907 1.1345 5.1028 17 6 1.5164 1.7964 6.4436 18 7 2.8876 2.3284 6.2479 19 6 3.6057 3.0806 7.1388 20 1 4.5364 3.5362 6.8342 21 6 3.1375 3.2575 8.4336 22 7 2.5071 2.2773 9.0451 23 14 3.4018 4.8871 9.3079 24 1 4.1321 5.8177 8.4102 25 1 2.0864 5.4752 9.6670 26 1 4.1976 4.6635 10.5415 27 6 2.0542 -2.2511 1.2254 28 6 3.3688 -1.4717 1.1386 29 1 -0.3633 0.5929 0.8394 30 1 -0.3633 0.4305 -0.9331 31 1 -0.3634 -1.0234 0.0938 32 1 3.6559 1.0073 1.2475 33 1 3.0319 2.6294 1.6133 34 1 5.1470 1.0581 3.1209 35 1 5.3341 2.6085 2.2764 36 1 5.2149 2.8890 4.7651 37 1 3.8693 3.7151 3.9341 38 1 1.2846 0.0619 5.1180 39 1 0.0424 1.3370 4.8830 40 1 1.5156 1.0542 7.2417 41 1 0.8338 2.6094 6.6911 42 1 2.4553 1.4015 8.6316 43 1 1.8377 -2.7710 2.1586 44 1 1.7005 -2.7437 0.3196 45 1 3.8795 -1.4519 0.1759 46 1 4.0173 -1.4786 2.0148 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049729419.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:52:55 Heat of formation + Delta-G solvation = -83.535510 kcal Electronic energy + Delta-G solvation = -30813.575762 eV Core-core repulsion = 26568.296662 eV Total energy + Delta-G solvation = -4245.279100 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 328.170 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -50.14527 -48.12881 -41.98868 -39.91421 -37.62957 -37.14376 -34.43956 -33.98214 -32.29103 -30.84638 -29.91621 -27.07967 -26.16897 -25.47587 -23.67211 -23.61783 -22.97375 -22.22442 -21.44595 -19.85632 -19.41702 -18.70124 -18.38504 -17.38824 -17.21967 -16.85522 -16.45950 -16.29147 -16.07520 -15.70313 -15.46228 -15.33675 -14.86432 -14.79153 -14.51055 -14.47157 -14.37743 -14.12302 -13.94363 -13.56166 -13.45578 -13.44786 -13.19512 -12.89942 -12.64411 -12.60197 -12.56589 -12.30129 -12.11899 -11.94053 -11.90778 -11.82103 -11.76868 -11.72151 -11.46754 -11.34699 -10.63905 -10.43424 -9.67867 -9.07589 -8.37704 -5.27108 1.26752 1.57084 1.63991 1.69112 1.81718 2.31555 2.55075 2.63283 2.96862 3.04021 3.09721 3.25044 3.38583 3.47389 3.72981 3.79333 3.85157 3.88077 3.90933 3.97493 4.09875 4.20047 4.34974 4.37927 4.41793 4.54829 4.56388 4.56876 4.64362 4.68413 4.76149 4.81557 4.88003 4.92683 4.93961 4.98579 5.02889 5.04352 5.20247 5.20855 5.36515 5.47057 5.71422 6.24921 6.32990 6.83434 6.99225 7.68735 8.31384 8.93802 Molecular weight = 328.17amu Principal moments of inertia in cm(-1) A = 0.024466 B = 0.003672 C = 0.003498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1144.184243 B = 7623.990279 C = 8002.369989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.337 3.663 3 F -0.196 7.196 4 F -0.189 7.189 5 C -0.230 4.230 6 C 0.555 3.445 7 O -0.557 6.557 8 N -0.588 5.588 9 C 0.112 3.888 10 C -0.121 4.121 11 C -0.109 4.109 12 C 0.155 3.845 13 H -0.010 1.010 14 C 0.133 3.867 15 H 0.087 0.913 16 C -0.105 4.105 17 C 0.141 3.859 18 N -0.609 5.609 19 C -0.345 4.345 20 H 0.071 0.929 21 C -0.077 4.077 22 N -0.935 5.935 23 Si 1.110 2.890 24 H -0.269 1.269 25 H -0.291 1.291 26 H -0.293 1.293 27 C -0.115 4.115 28 C -0.136 4.136 29 H 0.074 0.926 30 H 0.101 0.899 31 H 0.103 0.897 32 H 0.105 0.895 33 H 0.083 0.917 34 H 0.061 0.939 35 H 0.110 0.890 36 H 0.052 0.948 37 H 0.066 0.934 38 H 0.079 0.921 39 H 0.075 0.925 40 H 0.011 0.989 41 H 0.014 0.986 42 H 0.252 0.748 43 H 0.102 0.898 44 H 0.135 0.865 45 H 0.135 0.865 46 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.420 -5.490 -24.808 25.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C 0.301 3.699 3 F -0.177 7.177 4 F -0.169 7.169 5 C -0.234 4.234 6 C 0.343 3.657 7 O -0.435 6.435 8 N -0.319 5.319 9 C -0.009 4.009 10 C -0.160 4.160 11 C -0.148 4.148 12 C 0.047 3.953 13 H 0.007 0.993 14 C 0.028 3.972 15 H 0.105 0.895 16 C -0.143 4.143 17 C 0.015 3.985 18 N -0.334 5.334 19 C -0.472 4.472 20 H 0.089 0.911 21 C -0.274 4.274 22 N -0.578 5.578 23 Si 0.935 3.065 24 H -0.194 1.194 25 H -0.217 1.217 26 H -0.220 1.220 27 C -0.152 4.152 28 C -0.173 4.173 29 H 0.093 0.907 30 H 0.120 0.880 31 H 0.121 0.879 32 H 0.123 0.877 33 H 0.101 0.899 34 H 0.080 0.920 35 H 0.128 0.872 36 H 0.071 0.929 37 H 0.085 0.915 38 H 0.098 0.902 39 H 0.094 0.906 40 H 0.028 0.972 41 H 0.032 0.968 42 H 0.063 0.937 43 H 0.120 0.880 44 H 0.153 0.847 45 H 0.153 0.847 46 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -0.237 -4.825 -23.024 23.525 hybrid contribution 0.336 -0.851 -0.540 1.062 sum 0.099 -5.676 -23.563 24.238 Atomic orbital electron populations 1.22733 0.89724 1.06604 1.05572 1.20045 0.94419 0.74612 0.80848 1.93023 1.90466 1.37580 1.96613 1.93015 1.90658 1.80920 1.52354 1.22289 1.09836 0.98440 0.92798 1.19408 0.80079 0.79760 0.86421 1.90688 1.36295 1.64462 1.52103 1.47944 1.38082 1.22602 1.23320 1.22152 0.86273 0.99987 0.92523 1.21934 0.97670 1.01031 0.95323 1.21321 0.98438 0.98926 0.96104 1.20739 0.94140 0.95109 0.85311 0.99293 1.21967 0.96443 0.94755 0.84022 0.89481 1.22607 0.98866 1.00287 0.92506 1.21763 0.86051 0.95099 0.95605 1.44375 1.12815 1.62319 1.13873 1.19917 1.07573 1.26195 0.93541 0.91134 1.26976 0.99903 1.06000 0.94493 1.70862 1.47586 1.01716 1.37614 0.82979 0.76215 0.72710 0.74644 1.19354 1.21724 1.22033 1.23184 0.99047 0.87247 1.05703 1.23339 0.89286 0.98856 1.05825 0.90703 0.88029 0.87851 0.87650 0.89916 0.92016 0.87151 0.92926 0.91513 0.90215 0.90649 0.97151 0.96801 0.93732 0.87971 0.84658 0.84712 0.87885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.95 9.19 71.98 0.66 -2.29 16 2 C 0.34 6.02 2.05 30.60 0.06 6.08 16 3 F -0.20 -3.90 13.14 44.97 0.59 -3.31 16 4 F -0.19 -3.08 15.65 44.97 0.70 -2.38 16 5 C -0.23 -4.62 0.75 -52.93 -0.04 -4.66 16 6 C 0.56 16.14 6.36 87.66 0.56 16.70 16 7 O -0.56 -20.08 13.56 -3.05 -0.04 -20.12 16 8 N -0.59 -17.37 2.90 -791.77 -2.30 -19.67 16 9 C 0.11 2.52 4.50 86.03 0.39 2.91 16 10 C -0.12 -2.86 5.92 30.80 0.18 -2.68 16 11 C -0.11 -3.72 5.41 30.18 0.16 -3.55 16 12 C 0.16 6.58 2.56 45.30 0.12 6.69 16 13 H -0.01 -0.48 8.01 -2.39 -0.02 -0.50 16 14 C 0.13 4.94 3.32 46.03 0.15 5.09 16 15 H 0.09 3.18 8.14 -2.39 -0.02 3.16 16 16 C -0.10 -4.39 5.10 31.59 0.16 -4.23 16 17 C 0.14 7.23 5.91 86.87 0.51 7.74 16 18 N -0.61 -32.10 3.30 -671.62 -2.21 -34.31 16 19 C -0.34 -19.78 9.65 84.03 0.81 -18.96 16 20 H 0.07 3.96 7.48 -2.91 -0.02 3.94 16 21 C -0.08 -4.54 5.09 84.86 0.43 -4.11 16 22 N -0.94 -59.48 12.93 21.65 0.28 -59.20 16 23 Si 1.11 52.22 30.04 68.60 2.06 54.28 16 24 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 25 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16 26 H -0.29 -13.55 7.11 99.48 0.71 -12.85 16 27 C -0.11 -1.87 9.53 30.62 0.29 -1.58 16 28 C -0.14 -2.14 8.59 30.62 0.26 -1.87 16 29 H 0.07 1.43 7.88 -2.39 -0.02 1.41 16 30 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 31 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 32 H 0.11 1.96 4.64 -2.39 -0.01 1.95 16 33 H 0.08 1.74 7.65 -2.39 -0.02 1.72 16 34 H 0.06 1.49 8.13 -2.39 -0.02 1.47 16 35 H 0.11 1.90 8.14 -2.39 -0.02 1.88 16 36 H 0.05 1.94 7.73 -2.39 -0.02 1.92 16 37 H 0.07 2.22 8.12 -2.39 -0.02 2.20 16 38 H 0.08 3.56 6.06 -2.38 -0.01 3.54 16 39 H 0.07 2.96 8.14 -2.38 -0.02 2.94 16 40 H 0.01 0.61 6.12 -2.39 -0.01 0.59 16 41 H 0.01 0.75 8.14 -2.39 -0.02 0.73 16 42 H 0.25 16.54 6.21 -92.71 -0.58 15.96 16 43 H 0.10 1.97 8.08 -2.39 -0.02 1.95 16 44 H 0.14 1.53 7.95 -2.39 -0.02 1.51 16 45 H 0.13 1.55 7.62 -2.39 -0.02 1.53 16 46 H 0.10 1.79 8.14 -2.38 -0.02 1.77 16 Total: -1.00 -72.69 355.43 4.98 -67.72 By element: Atomic # 1 Polarization: 14.53 SS G_CDS: 1.18 Total: 15.71 kcal Atomic # 6 Polarization: -3.44 SS G_CDS: 4.72 Total: 1.28 kcal Atomic # 7 Polarization: -108.95 SS G_CDS: -4.23 Total: -113.18 kcal Atomic # 8 Polarization: -20.08 SS G_CDS: -0.04 Total: -20.12 kcal Atomic # 9 Polarization: -6.98 SS G_CDS: 1.29 Total: -5.69 kcal Atomic # 14 Polarization: 52.22 SS G_CDS: 2.06 Total: 54.28 kcal Total: -72.69 4.98 -67.72 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049729419.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.819 kcal (2) G-P(sol) polarization free energy of solvation -72.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.716 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds