Wall clock time and date at job start Tue Mar 31 2020 14:52:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 F 1.39902 * 109.46975 * 2 1 4 4 F 1.39896 * 109.47157 * 240.00102 * 2 1 3 5 5 C 1.52999 * 109.47539 * 119.99826 * 2 1 3 6 6 C 1.50707 * 115.55632 * 330.26149 * 5 2 1 7 7 O 1.21283 * 119.99723 * 89.87742 * 6 5 2 8 8 N 1.34772 * 120.00146 * 269.86642 * 6 5 2 9 9 C 1.47853 * 122.22680 * 4.15819 * 8 6 5 10 10 C 1.53141 * 110.81940 * 127.48529 * 9 8 6 11 11 C 1.53861 * 111.47351 * 48.77499 * 10 9 8 12 12 C 1.51088 * 107.34163 * 302.93326 * 11 10 9 13 13 H 1.08999 * 108.73690 * 308.51584 * 12 11 10 14 14 C 1.45726 * 122.22996 * 184.43869 * 8 6 5 15 15 H 1.08994 * 111.06522 * 119.46660 * 14 8 6 16 16 C 1.53430 * 116.38024 * 350.10085 * 14 8 6 17 17 C 1.55463 * 101.67005 * 207.26173 * 16 14 8 18 18 N 1.45035 * 119.18252 * 183.87122 * 12 11 10 19 19 C 1.36939 * 126.55983 * 28.77369 * 18 12 11 20 20 H 1.07995 * 120.00179 * 0.02562 * 19 18 12 21 21 C 1.38818 * 119.99637 * 179.97438 * 19 18 12 22 22 N 1.31620 * 119.99885 * 359.97438 * 21 19 18 23 23 Si 1.86791 * 119.99743 * 180.02562 * 21 19 18 24 24 H 1.48505 * 109.47356 * 60.00103 * 23 21 19 25 25 H 1.48506 * 109.47423 * 179.97438 * 23 21 19 26 26 H 1.48500 * 109.47511 * 299.99716 * 23 21 19 27 27 C 1.52996 * 117.50059 * 184.57416 * 5 2 1 28 28 C 1.52993 * 117.49841 * 115.94711 * 5 2 1 29 29 H 1.09002 * 109.46856 * 295.31533 * 1 2 3 30 30 H 1.08998 * 109.47235 * 55.31395 * 1 2 3 31 31 H 1.08999 * 109.46707 * 175.31242 * 1 2 3 32 32 H 1.09003 * 109.15907 * 247.93821 * 9 8 6 33 33 H 1.08998 * 109.16200 * 7.12593 * 9 8 6 34 34 H 1.08998 * 109.21422 * 288.18863 * 10 9 8 35 35 H 1.09005 * 108.92833 * 169.17046 * 10 9 8 36 36 H 1.09000 * 109.89113 * 183.47221 * 11 10 9 37 37 H 1.09007 * 109.88514 * 62.38632 * 11 10 9 38 38 H 1.09004 * 110.98557 * 325.35265 * 16 14 8 39 39 H 1.08998 * 110.98698 * 89.16159 * 16 14 8 40 40 H 1.09009 * 109.96116 * 263.21766 * 17 16 14 41 41 H 1.08997 * 109.99309 * 141.99972 * 17 16 14 42 42 H 0.96997 * 119.99266 * 179.97438 * 22 21 19 43 43 H 1.09006 * 117.49618 * 145.02338 * 27 5 2 44 44 H 1.08991 * 117.50207 * 0.02562 * 27 5 2 45 45 H 1.08991 * 117.50380 * 0.02562 * 28 5 2 46 46 H 1.09000 * 117.51556 * 214.97001 * 28 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 9 1.9963 1.3190 0.0000 4 9 1.9963 -0.6595 -1.1423 5 6 2.0401 -0.7212 1.2492 6 6 1.1438 -0.6404 2.4581 7 8 0.2905 -1.4833 2.6378 8 7 1.2907 0.3685 3.3396 9 6 2.2525 1.4704 3.1237 10 6 1.5602 2.8303 3.2532 11 6 0.7087 2.9094 4.5322 12 6 -0.2849 1.7722 4.4828 13 1 -0.8024 1.8009 3.5239 14 6 0.5163 0.4427 4.5719 15 1 1.1680 0.4290 5.4455 16 6 -0.6414 -0.5545 4.7106 17 6 -1.6063 0.2137 5.6571 18 7 -1.2789 1.6555 5.5324 19 6 -1.8127 2.6799 6.2679 20 1 -1.4958 3.6964 6.0875 21 6 -2.7619 2.4117 7.2447 22 7 -3.1491 1.1729 7.4636 23 14 -3.4905 3.8090 8.2475 24 1 -4.1708 4.7675 7.3398 25 1 -4.4742 3.2625 9.2165 26 1 -2.4065 4.5082 8.9832 27 6 3.5510 -0.7350 1.4896 28 6 2.8354 -2.0120 1.0444 29 1 -0.3633 0.4394 0.9290 30 1 -0.3633 0.5848 -0.8450 31 1 -0.3633 -1.0242 -0.0840 32 1 3.0496 1.3997 3.8638 33 1 2.6825 1.3797 2.1263 34 1 0.9177 2.9896 2.3872 35 1 2.3192 3.6122 3.2819 36 1 0.1803 3.8620 4.5677 37 1 1.3471 2.8058 5.4097 38 1 -1.1107 -0.7446 3.7453 39 1 -0.3033 -1.4841 5.1685 40 1 -1.4576 -0.1141 6.6860 41 1 -2.6397 0.0395 5.3572 42 1 -3.8121 0.9856 8.1464 43 1 3.8968 -0.6857 2.5221 44 1 4.1816 -0.2299 0.7580 45 1 2.9957 -2.3473 0.0198 46 1 2.7109 -2.8029 1.7840 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049729422.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:52:59 Heat of formation + Delta-G solvation = -66.429962 kcal Electronic energy + Delta-G solvation = -30859.046610 eV Core-core repulsion = 26614.509263 eV Total energy + Delta-G solvation = -4244.537348 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 328.170 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -49.23621 -47.20471 -40.68058 -38.39868 -36.57535 -35.34912 -32.64839 -32.12456 -31.59009 -29.00870 -28.23438 -25.62192 -24.51050 -24.29539 -22.92572 -22.37315 -21.46167 -20.57065 -19.61074 -18.91590 -17.62560 -17.43463 -16.73033 -16.47960 -15.78789 -15.61847 -15.00436 -14.90060 -14.65533 -14.23934 -14.04827 -13.97485 -13.75193 -13.53911 -13.41941 -13.11007 -12.86166 -12.61214 -12.51628 -12.38110 -12.21845 -11.98123 -11.86270 -11.68416 -11.57196 -11.14564 -10.93873 -10.84203 -10.77285 -10.69853 -10.46762 -10.38092 -10.12598 -10.02406 -9.87746 -9.61663 -9.07340 -8.58799 -8.30103 -6.83635 -5.70413 -3.04714 2.46056 2.85185 3.17086 3.40431 3.44794 3.46206 3.50664 3.89936 4.01067 4.26522 4.29796 4.49526 4.67902 4.76070 4.87229 5.09858 5.15872 5.24746 5.33545 5.34371 5.36286 5.43582 5.52731 5.54423 5.58903 5.65222 5.73076 5.78265 5.81771 5.83508 5.99203 6.07544 6.22715 6.28803 6.39200 6.52295 6.70298 6.73577 6.86014 7.14344 7.55180 7.59721 7.65512 7.82910 8.23975 8.27209 9.18976 9.82825 10.50763 11.41569 Molecular weight = 328.17amu Principal moments of inertia in cm(-1) A = 0.022843 B = 0.003752 C = 0.003585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1225.476325 B = 7460.926438 C = 7808.441877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.336 3.664 3 F -0.192 7.192 4 F -0.194 7.194 5 C -0.218 4.218 6 C 0.559 3.441 7 O -0.517 6.517 8 N -0.589 5.589 9 C 0.104 3.896 10 C -0.127 4.127 11 C -0.116 4.116 12 C 0.160 3.840 13 H 0.017 0.983 14 C 0.115 3.885 15 H 0.082 0.918 16 C -0.133 4.133 17 C 0.173 3.827 18 N -0.592 5.592 19 C -0.228 4.228 20 H 0.078 0.922 21 C -0.006 4.006 22 N -0.920 5.920 23 Si 0.910 3.090 24 H -0.285 1.285 25 H -0.290 1.290 26 H -0.285 1.285 27 C -0.151 4.151 28 C -0.125 4.125 29 H 0.091 0.909 30 H 0.083 0.917 31 H 0.096 0.904 32 H 0.066 0.934 33 H 0.087 0.913 34 H 0.064 0.936 35 H 0.073 0.927 36 H 0.067 0.933 37 H 0.064 0.936 38 H 0.085 0.915 39 H 0.059 0.941 40 H 0.056 0.944 41 H 0.040 0.960 42 H 0.253 0.747 43 H 0.110 0.890 44 H 0.109 0.891 45 H 0.114 0.886 46 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.575 -2.819 -14.097 20.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.250 4.250 2 C 0.300 3.700 3 F -0.173 7.173 4 F -0.175 7.175 5 C -0.222 4.222 6 C 0.345 3.655 7 O -0.393 6.393 8 N -0.322 5.322 9 C -0.019 4.019 10 C -0.166 4.166 11 C -0.155 4.155 12 C 0.051 3.949 13 H 0.034 0.966 14 C 0.011 3.989 15 H 0.100 0.900 16 C -0.171 4.171 17 C 0.048 3.952 18 N -0.317 5.317 19 C -0.356 4.356 20 H 0.096 0.904 21 C -0.203 4.203 22 N -0.567 5.567 23 Si 0.741 3.259 24 H -0.212 1.212 25 H -0.216 1.216 26 H -0.212 1.212 27 C -0.188 4.188 28 C -0.162 4.162 29 H 0.110 0.890 30 H 0.102 0.898 31 H 0.115 0.885 32 H 0.084 0.916 33 H 0.105 0.895 34 H 0.083 0.917 35 H 0.091 0.909 36 H 0.086 0.914 37 H 0.082 0.918 38 H 0.104 0.896 39 H 0.078 0.922 40 H 0.074 0.926 41 H 0.058 0.942 42 H 0.063 0.937 43 H 0.128 0.872 44 H 0.127 0.873 45 H 0.133 0.867 46 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 13.936 -3.233 -13.839 19.905 hybrid contribution -0.268 0.952 0.482 1.100 sum 13.668 -2.281 -13.357 19.247 Atomic orbital electron populations 1.22783 0.90368 1.06204 1.05608 1.19953 0.94004 0.74833 0.81246 1.93013 1.90572 1.37159 1.96559 1.92990 1.90631 1.80982 1.52919 1.22495 0.96270 1.07215 0.96214 1.18806 0.83215 0.81474 0.82019 1.90727 1.33443 1.40073 1.75084 1.47967 1.40346 1.22666 1.21174 1.21975 0.91152 0.86414 1.02326 1.21948 0.99642 0.95695 0.99338 1.21444 0.97484 1.00231 0.96322 1.20756 0.89360 0.91901 0.92928 0.96573 1.22496 0.92482 0.99696 0.84244 0.90046 1.23027 0.95507 0.96620 1.01965 1.21737 0.95110 0.81598 0.96747 1.44082 1.43922 1.03557 1.40131 1.18940 1.17608 0.86933 1.12087 0.90413 1.24796 0.99525 0.96505 0.99433 1.69935 1.34455 1.16939 1.35374 0.86232 0.78711 0.81139 0.79849 1.21212 1.21613 1.21190 1.23197 0.90288 1.01146 1.04125 1.23119 0.98173 0.90437 1.04456 0.89022 0.89759 0.88519 0.91581 0.89516 0.91721 0.90876 0.91407 0.91772 0.89619 0.92178 0.92584 0.94219 0.93672 0.87157 0.87267 0.86739 0.87096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.27 8.67 37.16 0.32 -1.95 16 2 C 0.34 3.93 2.26 -26.73 -0.06 3.87 16 3 F -0.19 -2.30 15.43 2.25 0.03 -2.27 16 4 F -0.19 -2.23 15.63 2.25 0.04 -2.20 16 5 C -0.22 -2.53 1.18 -155.66 -0.18 -2.72 16 6 C 0.56 8.36 4.95 -10.98 -0.05 8.30 16 7 O -0.52 -9.31 13.64 5.55 0.08 -9.24 16 8 N -0.59 -8.84 2.91 -163.74 -0.48 -9.32 16 9 C 0.10 1.25 5.63 -3.23 -0.02 1.23 16 10 C -0.13 -1.64 5.94 -26.21 -0.16 -1.80 16 11 C -0.12 -1.96 5.45 -27.24 -0.15 -2.11 16 12 C 0.16 3.26 2.57 -68.36 -0.18 3.08 16 13 H 0.02 0.37 8.06 -51.93 -0.42 -0.05 16 14 C 0.11 2.11 3.32 -66.80 -0.22 1.89 16 15 H 0.08 1.51 8.14 -51.93 -0.42 1.09 16 16 C -0.13 -2.73 5.09 -25.20 -0.13 -2.86 16 17 C 0.17 4.28 5.47 -1.70 -0.01 4.27 16 18 N -0.59 -14.93 3.35 -163.28 -0.55 -15.48 16 19 C -0.23 -6.21 9.94 -15.06 -0.15 -6.36 16 20 H 0.08 2.03 7.31 -52.49 -0.38 1.65 16 21 C -0.01 -0.17 5.49 -17.43 -0.10 -0.27 16 22 N -0.92 -27.01 10.46 55.49 0.58 -26.42 16 23 Si 0.91 21.95 29.55 -169.99 -5.02 16.92 16 24 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 25 H -0.29 -7.09 7.11 56.52 0.40 -6.68 16 26 H -0.29 -6.75 7.11 56.52 0.40 -6.34 16 27 C -0.15 -1.34 7.97 -26.73 -0.21 -1.55 16 28 C -0.12 -1.20 9.62 -26.73 -0.26 -1.45 16 29 H 0.09 1.27 6.93 -51.93 -0.36 0.91 16 30 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.10 1.13 8.14 -51.93 -0.42 0.70 16 32 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.09 0.93 4.00 -51.93 -0.21 0.72 16 34 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 35 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.07 1.20 7.70 -51.93 -0.40 0.80 16 37 H 0.06 1.08 8.12 -51.93 -0.42 0.66 16 38 H 0.09 1.83 6.07 -51.93 -0.32 1.52 16 39 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 40 H 0.06 1.52 7.19 -51.92 -0.37 1.15 16 41 H 0.04 1.09 7.80 -51.93 -0.41 0.68 16 42 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 43 H 0.11 0.93 7.92 -51.93 -0.41 0.52 16 44 H 0.11 0.84 8.14 -51.93 -0.42 0.41 16 45 H 0.11 0.97 7.18 -51.93 -0.37 0.60 16 46 H 0.11 1.08 8.14 -51.93 -0.42 0.66 16 LS Contribution 355.70 15.07 5.36 5.36 Total: -1.00 -30.78 355.70 -8.52 -39.29 By element: Atomic # 1 Polarization: 8.76 SS G_CDS: -7.01 Total: 1.76 kcal Atomic # 6 Polarization: 3.14 SS G_CDS: -1.55 Total: 1.59 kcal Atomic # 7 Polarization: -50.78 SS G_CDS: -0.44 Total: -51.22 kcal Atomic # 8 Polarization: -9.31 SS G_CDS: 0.08 Total: -9.24 kcal Atomic # 9 Polarization: -4.54 SS G_CDS: 0.07 Total: -4.47 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -30.78 -8.52 -39.29 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049729422.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.136 kcal (2) G-P(sol) polarization free energy of solvation -30.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.294 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds