Wall clock time and date at job start Tue Mar 31 2020 14:52:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 F 1.39902 * 109.46975 * 2 1 4 4 F 1.39896 * 109.47157 * 240.00102 * 2 1 3 5 5 C 1.52999 * 109.47539 * 119.99826 * 2 1 3 6 6 C 1.50707 * 115.55632 * 330.26149 * 5 2 1 7 7 O 1.21283 * 119.99723 * 89.87742 * 6 5 2 8 8 N 1.34772 * 120.00146 * 269.86642 * 6 5 2 9 9 C 1.47853 * 122.22680 * 4.15819 * 8 6 5 10 10 C 1.53141 * 110.81940 * 127.48529 * 9 8 6 11 11 C 1.53861 * 111.47351 * 48.77499 * 10 9 8 12 12 C 1.51088 * 107.34163 * 302.93326 * 11 10 9 13 13 H 1.08999 * 108.73690 * 308.51584 * 12 11 10 14 14 C 1.45726 * 122.22996 * 184.43869 * 8 6 5 15 15 H 1.08994 * 111.06522 * 119.46660 * 14 8 6 16 16 C 1.53430 * 116.38024 * 350.10085 * 14 8 6 17 17 C 1.55463 * 101.67005 * 207.26173 * 16 14 8 18 18 N 1.45035 * 119.18252 * 183.87122 * 12 11 10 19 19 C 1.36939 * 126.55983 * 28.77369 * 18 12 11 20 20 H 1.07995 * 120.00179 * 0.02562 * 19 18 12 21 21 C 1.38818 * 119.99637 * 179.97438 * 19 18 12 22 22 N 1.31620 * 119.99885 * 359.97438 * 21 19 18 23 23 Si 1.86791 * 119.99743 * 180.02562 * 21 19 18 24 24 H 1.48505 * 109.47356 * 60.00103 * 23 21 19 25 25 H 1.48506 * 109.47423 * 179.97438 * 23 21 19 26 26 H 1.48500 * 109.47511 * 299.99716 * 23 21 19 27 27 C 1.52996 * 117.50059 * 184.57416 * 5 2 1 28 28 C 1.52993 * 117.49841 * 115.94711 * 5 2 1 29 29 H 1.09002 * 109.46856 * 295.31533 * 1 2 3 30 30 H 1.08998 * 109.47235 * 55.31395 * 1 2 3 31 31 H 1.08999 * 109.46707 * 175.31242 * 1 2 3 32 32 H 1.09003 * 109.15907 * 247.93821 * 9 8 6 33 33 H 1.08998 * 109.16200 * 7.12593 * 9 8 6 34 34 H 1.08998 * 109.21422 * 288.18863 * 10 9 8 35 35 H 1.09005 * 108.92833 * 169.17046 * 10 9 8 36 36 H 1.09000 * 109.89113 * 183.47221 * 11 10 9 37 37 H 1.09007 * 109.88514 * 62.38632 * 11 10 9 38 38 H 1.09004 * 110.98557 * 325.35265 * 16 14 8 39 39 H 1.08998 * 110.98698 * 89.16159 * 16 14 8 40 40 H 1.09009 * 109.96116 * 263.21766 * 17 16 14 41 41 H 1.08997 * 109.99309 * 141.99972 * 17 16 14 42 42 H 0.96997 * 119.99266 * 179.97438 * 22 21 19 43 43 H 1.09006 * 117.49618 * 145.02338 * 27 5 2 44 44 H 1.08991 * 117.50207 * 0.02562 * 27 5 2 45 45 H 1.08991 * 117.50380 * 0.02562 * 28 5 2 46 46 H 1.09000 * 117.51556 * 214.97001 * 28 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 9 1.9963 1.3190 0.0000 4 9 1.9963 -0.6595 -1.1423 5 6 2.0401 -0.7212 1.2492 6 6 1.1438 -0.6404 2.4581 7 8 0.2905 -1.4833 2.6378 8 7 1.2907 0.3685 3.3396 9 6 2.2525 1.4704 3.1237 10 6 1.5602 2.8303 3.2532 11 6 0.7087 2.9094 4.5322 12 6 -0.2849 1.7722 4.4828 13 1 -0.8024 1.8009 3.5239 14 6 0.5163 0.4427 4.5719 15 1 1.1680 0.4290 5.4455 16 6 -0.6414 -0.5545 4.7106 17 6 -1.6063 0.2137 5.6571 18 7 -1.2789 1.6555 5.5324 19 6 -1.8127 2.6799 6.2679 20 1 -1.4958 3.6964 6.0875 21 6 -2.7619 2.4117 7.2447 22 7 -3.1491 1.1729 7.4636 23 14 -3.4905 3.8090 8.2475 24 1 -4.1708 4.7675 7.3398 25 1 -4.4742 3.2625 9.2165 26 1 -2.4065 4.5082 8.9832 27 6 3.5510 -0.7350 1.4896 28 6 2.8354 -2.0120 1.0444 29 1 -0.3633 0.4394 0.9290 30 1 -0.3633 0.5848 -0.8450 31 1 -0.3633 -1.0242 -0.0840 32 1 3.0496 1.3997 3.8638 33 1 2.6825 1.3797 2.1263 34 1 0.9177 2.9896 2.3872 35 1 2.3192 3.6122 3.2819 36 1 0.1803 3.8620 4.5677 37 1 1.3471 2.8058 5.4097 38 1 -1.1107 -0.7446 3.7453 39 1 -0.3033 -1.4841 5.1685 40 1 -1.4576 -0.1141 6.6860 41 1 -2.6397 0.0395 5.3572 42 1 -3.8121 0.9856 8.1464 43 1 3.8968 -0.6857 2.5221 44 1 4.1816 -0.2299 0.7580 45 1 2.9957 -2.3473 0.0198 46 1 2.7109 -2.8029 1.7840 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049729422.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:52:58 Heat of formation + Delta-G solvation = -83.867088 kcal Electronic energy + Delta-G solvation = -30859.802741 eV Core-core repulsion = 26614.509263 eV Total energy + Delta-G solvation = -4245.293478 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 328.170 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -50.14004 -48.10504 -41.93862 -39.75789 -37.61156 -36.87586 -34.23769 -33.82841 -32.50710 -30.86670 -29.72282 -26.91286 -26.31030 -25.39741 -23.70661 -23.58621 -22.80331 -22.12157 -21.28643 -19.99961 -18.71814 -18.52459 -18.27509 -17.41584 -17.19552 -16.81955 -16.71593 -16.23592 -15.95742 -15.59866 -15.34145 -15.11438 -14.96307 -14.81136 -14.42944 -14.34954 -14.18807 -14.00295 -13.75858 -13.58255 -13.45002 -13.29561 -13.16816 -12.88232 -12.74431 -12.68787 -12.50200 -12.26912 -12.15253 -12.01289 -11.83825 -11.73730 -11.69205 -11.61363 -11.42525 -11.36797 -10.76001 -10.38289 -9.61954 -8.91176 -7.84086 -5.20839 1.33519 1.45986 1.49371 1.55508 1.75161 2.32725 2.50231 2.58651 3.00075 3.04088 3.27798 3.34636 3.47688 3.49928 3.81427 3.82543 3.90974 4.00705 4.03409 4.06383 4.23701 4.31542 4.40668 4.52030 4.55440 4.57404 4.59339 4.60456 4.64075 4.79104 4.85269 4.86522 4.90984 5.00769 5.06109 5.08246 5.13605 5.27185 5.40784 5.48093 5.58900 5.59318 5.72263 6.17804 6.40872 7.05465 7.07571 7.75689 8.45316 9.27436 Molecular weight = 328.17amu Principal moments of inertia in cm(-1) A = 0.022843 B = 0.003752 C = 0.003585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1225.476325 B = 7460.926438 C = 7808.441877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.342 3.658 3 F -0.192 7.192 4 F -0.190 7.190 5 C -0.235 4.235 6 C 0.559 3.441 7 O -0.556 6.556 8 N -0.590 5.590 9 C 0.101 3.899 10 C -0.119 4.119 11 C -0.111 4.111 12 C 0.154 3.846 13 H -0.003 1.003 14 C 0.132 3.868 15 H 0.086 0.914 16 C -0.115 4.115 17 C 0.183 3.817 18 N -0.611 5.611 19 C -0.234 4.234 20 H 0.088 0.912 21 C -0.067 4.067 22 N -0.954 5.954 23 Si 0.978 3.022 24 H -0.279 1.279 25 H -0.297 1.297 26 H -0.273 1.273 27 C -0.128 4.128 28 C -0.120 4.120 29 H 0.067 0.933 30 H 0.099 0.901 31 H 0.093 0.907 32 H 0.092 0.908 33 H 0.107 0.893 34 H 0.057 0.943 35 H 0.110 0.890 36 H 0.056 0.944 37 H 0.067 0.933 38 H 0.076 0.924 39 H 0.065 0.935 40 H 0.026 0.974 41 H -0.001 1.001 42 H 0.246 0.754 43 H 0.120 0.880 44 H 0.130 0.870 45 H 0.128 0.872 46 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.817 -1.542 -15.513 23.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.250 4.250 2 C 0.305 3.695 3 F -0.173 7.173 4 F -0.171 7.171 5 C -0.239 4.239 6 C 0.346 3.654 7 O -0.434 6.434 8 N -0.321 5.321 9 C -0.020 4.020 10 C -0.158 4.158 11 C -0.149 4.149 12 C 0.045 3.955 13 H 0.015 0.985 14 C 0.027 3.973 15 H 0.104 0.896 16 C -0.154 4.154 17 C 0.057 3.943 18 N -0.336 5.336 19 C -0.363 4.363 20 H 0.106 0.894 21 C -0.260 4.260 22 N -0.603 5.603 23 Si 0.806 3.194 24 H -0.205 1.205 25 H -0.224 1.224 26 H -0.198 1.198 27 C -0.165 4.165 28 C -0.158 4.158 29 H 0.086 0.914 30 H 0.118 0.882 31 H 0.112 0.888 32 H 0.110 0.890 33 H 0.125 0.875 34 H 0.076 0.924 35 H 0.128 0.872 36 H 0.075 0.925 37 H 0.086 0.914 38 H 0.094 0.906 39 H 0.084 0.916 40 H 0.044 0.956 41 H 0.017 0.983 42 H 0.055 0.945 43 H 0.139 0.861 44 H 0.149 0.851 45 H 0.146 0.854 46 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 17.235 -1.925 -15.299 23.126 hybrid contribution -1.304 0.531 0.847 1.643 sum 15.931 -1.394 -14.452 21.554 Atomic orbital electron populations 1.22754 0.91178 1.06111 1.04963 1.19772 0.93472 0.74843 0.81383 1.93011 1.90493 1.37174 1.96575 1.92997 1.90510 1.80921 1.52684 1.22295 0.97421 1.09661 0.94553 1.19318 0.82927 0.80577 0.82549 1.90704 1.35150 1.41487 1.76070 1.48008 1.40378 1.23822 1.19937 1.22253 0.90741 0.84615 1.04404 1.21927 0.99828 0.97511 0.96499 1.21408 0.96873 0.97785 0.98859 1.20931 0.89275 0.95022 0.90237 0.98548 1.22069 0.91971 0.97000 0.86271 0.89639 1.22758 0.95649 0.96817 1.00152 1.21440 0.94170 0.82711 0.95936 1.44331 1.45305 1.03166 1.40792 1.19366 1.17251 0.87931 1.11753 0.89420 1.25667 1.00433 0.98850 1.01029 1.70169 1.35125 1.19023 1.35984 0.85160 0.77870 0.78235 0.78116 1.20489 1.22363 1.19826 1.23399 0.87879 0.99819 1.05367 1.23234 0.97144 0.90140 1.05236 0.91404 0.88221 0.88812 0.88995 0.87456 0.92388 0.87199 0.92537 0.91416 0.90560 0.91587 0.95560 0.98282 0.94484 0.86134 0.85148 0.85436 0.87516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -4.41 8.67 71.98 0.62 -3.79 16 2 C 0.34 7.18 2.26 30.59 0.07 7.24 16 3 F -0.19 -3.98 15.43 44.97 0.69 -3.29 16 4 F -0.19 -3.83 15.63 44.97 0.70 -3.13 16 5 C -0.24 -4.87 1.18 -52.93 -0.06 -4.93 16 6 C 0.56 16.03 4.95 87.66 0.43 16.47 16 7 O -0.56 -20.16 13.64 -3.04 -0.04 -20.20 16 8 N -0.59 -16.72 2.91 -790.35 -2.30 -19.02 16 9 C 0.10 2.06 5.63 86.17 0.49 2.54 16 10 C -0.12 -2.68 5.94 30.93 0.18 -2.50 16 11 C -0.11 -3.56 5.45 30.26 0.16 -3.40 16 12 C 0.15 6.32 2.57 45.50 0.12 6.43 16 13 H 0.00 -0.13 8.06 -2.39 -0.02 -0.15 16 14 C 0.13 4.82 3.32 46.14 0.15 4.97 16 15 H 0.09 3.09 8.14 -2.39 -0.02 3.07 16 16 C -0.12 -4.94 5.09 31.59 0.16 -4.78 16 17 C 0.18 9.65 5.47 86.87 0.48 10.12 16 18 N -0.61 -31.92 3.35 -670.50 -2.25 -34.17 16 19 C -0.23 -13.07 9.94 84.03 0.84 -12.23 16 20 H 0.09 4.59 7.31 -2.91 -0.02 4.57 16 21 C -0.07 -3.85 5.49 84.86 0.47 -3.38 16 22 N -0.95 -58.67 10.46 21.65 0.23 -58.44 16 23 Si 0.98 45.94 29.55 68.60 2.03 47.97 16 24 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 25 H -0.30 -14.19 7.11 99.48 0.71 -13.48 16 26 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 27 C -0.13 -1.73 7.97 30.59 0.24 -1.49 16 28 C -0.12 -1.96 9.62 30.59 0.29 -1.66 16 29 H 0.07 1.89 6.93 -2.39 -0.02 1.87 16 30 H 0.10 1.90 8.14 -2.39 -0.02 1.88 16 31 H 0.09 2.17 8.14 -2.39 -0.02 2.15 16 32 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 33 H 0.11 1.81 4.00 -2.39 -0.01 1.80 16 34 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 35 H 0.11 1.76 8.14 -2.38 -0.02 1.74 16 36 H 0.06 1.93 7.70 -2.39 -0.02 1.91 16 37 H 0.07 2.13 8.12 -2.38 -0.02 2.12 16 38 H 0.08 3.44 6.07 -2.38 -0.01 3.42 16 39 H 0.07 2.71 8.14 -2.39 -0.02 2.69 16 40 H 0.03 1.52 7.19 -2.38 -0.02 1.50 16 41 H 0.00 -0.06 7.80 -2.39 -0.02 -0.08 16 42 H 0.25 14.78 8.31 -92.71 -0.77 14.01 16 43 H 0.12 1.44 7.92 -2.38 -0.02 1.43 16 44 H 0.13 1.29 8.14 -2.39 -0.02 1.27 16 45 H 0.13 1.75 7.18 -2.39 -0.02 1.73 16 46 H 0.11 1.85 8.14 -2.39 -0.02 1.83 16 Total: -1.00 -70.58 355.70 4.69 -65.89 By element: Atomic # 1 Polarization: 13.78 SS G_CDS: 0.98 Total: 14.77 kcal Atomic # 6 Polarization: 4.97 SS G_CDS: 4.64 Total: 9.62 kcal Atomic # 7 Polarization: -107.31 SS G_CDS: -4.32 Total: -111.63 kcal Atomic # 8 Polarization: -20.16 SS G_CDS: -0.04 Total: -20.20 kcal Atomic # 9 Polarization: -7.81 SS G_CDS: 1.40 Total: -6.41 kcal Atomic # 14 Polarization: 45.94 SS G_CDS: 2.03 Total: 47.97 kcal Total: -70.58 4.69 -65.89 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049729422.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.980 kcal (2) G-P(sol) polarization free energy of solvation -70.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.887 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds