Wall clock time and date at job start Tue Mar 31 2020 14:53:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 F 1.39902 * 109.47455 * 2 1 4 4 F 1.39905 * 109.46952 * 240.00340 * 2 1 3 5 5 C 1.52998 * 109.47103 * 120.00408 * 2 1 3 6 6 C 1.50705 * 115.54742 * 295.97981 * 5 2 1 7 7 O 1.21280 * 119.99798 * 96.99334 * 6 5 2 8 8 N 1.34771 * 119.99864 * 276.98466 * 6 5 2 9 9 C 1.46796 * 119.58494 * 355.07449 * 8 6 5 10 10 C 1.53458 * 107.59994 * 127.91639 * 9 8 6 11 11 C 1.54349 * 108.14854 * 58.49359 * 10 9 8 12 12 C 1.53013 * 109.93425 * 295.48069 * 11 10 9 13 13 H 1.08998 * 112.10414 * 291.62331 * 12 11 10 14 14 C 1.45128 * 119.57201 * 175.04363 * 8 6 5 15 15 H 1.08994 * 109.97358 * 348.09897 * 14 8 6 16 16 C 1.54426 * 112.29864 * 110.94509 * 14 8 6 17 17 C 1.54567 * 102.44820 * 156.91720 * 16 14 8 18 18 N 1.47121 * 107.25241 * 338.32354 * 17 16 14 19 19 C 1.36937 * 125.76856 * 177.66705 * 18 17 16 20 20 H 1.08001 * 120.00330 * 179.69261 * 19 18 17 21 21 C 1.38816 * 119.99772 * 359.69482 * 19 18 17 22 22 N 1.31614 * 119.99906 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 120.00027 * 179.97438 * 21 19 18 24 24 H 1.48503 * 109.46960 * 59.99616 * 23 21 19 25 25 H 1.48493 * 109.47205 * 179.97438 * 23 21 19 26 26 H 1.48498 * 109.46719 * 300.00160 * 23 21 19 27 27 C 1.53002 * 117.52114 * 81.68436 * 5 2 1 28 28 C 1.53001 * 60.00022 * 107.48297 * 27 5 2 29 29 H 1.08996 * 109.47261 * 295.97184 * 1 2 3 30 30 H 1.09005 * 109.46966 * 55.96682 * 1 2 3 31 31 H 1.08998 * 109.47095 * 175.96641 * 1 2 3 32 32 H 1.08999 * 109.83173 * 247.44648 * 9 8 6 33 33 H 1.09003 * 109.82988 * 8.39129 * 9 8 6 34 34 H 1.09003 * 109.64042 * 177.76518 * 10 9 8 35 35 H 1.08991 * 109.64509 * 298.18817 * 10 9 8 36 36 H 1.08999 * 108.90302 * 175.86535 * 11 10 9 37 37 H 1.08994 * 110.38027 * 56.02471 * 11 10 9 38 38 H 1.09007 * 110.80705 * 275.15596 * 16 14 8 39 39 H 1.09003 * 110.81413 * 38.48057 * 16 14 8 40 40 H 1.08996 * 109.88903 * 218.90869 * 17 16 14 41 41 H 1.09000 * 109.88390 * 97.72885 * 17 16 14 42 42 H 0.97000 * 119.99723 * 180.02562 * 22 21 19 43 43 H 1.09001 * 117.49899 * 214.97436 * 27 5 2 44 44 H 1.08994 * 117.49386 * 359.97438 * 27 5 2 45 45 H 1.09004 * 117.49604 * 252.50971 * 28 27 5 46 46 H 1.08992 * 117.50199 * 107.49322 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 9 1.9964 1.3190 0.0000 4 9 1.9963 -0.6595 -1.1424 5 6 2.0400 -0.7213 1.2492 6 6 1.6950 -0.0685 2.5630 7 8 0.7339 -0.4509 3.1962 8 7 2.4547 0.9400 3.0343 9 6 3.6767 1.3233 2.3168 10 6 3.6143 2.8366 2.0696 11 6 3.4926 3.5424 3.4368 12 6 2.1677 3.1650 4.1027 13 1 1.3099 3.5812 3.5744 14 6 2.0538 1.6336 4.2444 15 1 1.0333 1.3586 4.5104 16 6 3.0039 1.3453 5.4271 17 6 2.7777 2.5701 6.3424 18 7 2.2304 3.6471 5.5028 19 6 1.8488 4.8874 5.9401 20 1 1.4618 5.6118 5.2388 21 6 1.9594 5.2136 7.2848 22 7 2.4305 4.3306 8.1396 23 14 1.4395 6.9058 7.8813 24 1 0.0013 7.1173 7.5778 25 1 1.6549 7.0016 9.3474 26 1 2.2485 7.9433 7.1926 27 6 2.0906 -2.2500 1.2117 28 6 3.3871 -1.4399 1.1496 29 1 -0.3633 0.4500 0.9238 30 1 -0.3633 0.5752 -0.8517 31 1 -0.3633 -1.0251 -0.0723 32 1 4.5513 1.0830 2.9213 33 1 3.7277 0.7949 1.3648 34 1 4.5269 3.1645 1.5719 35 1 2.7521 3.0706 1.4452 36 1 3.5214 4.6209 3.2813 37 1 4.3169 3.2525 4.0884 38 1 2.7203 0.4239 5.9359 39 1 4.0392 1.2964 5.0893 40 1 3.7247 2.8860 6.7799 41 1 2.0685 2.3178 7.1308 42 1 2.5074 4.5584 9.0793 43 1 1.8744 -2.7836 2.1372 44 1 1.7601 -2.7421 0.2970 45 1 3.9098 -1.3992 0.1939 46 1 4.0238 -1.4406 2.0342 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049729426.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:53:02 Heat of formation + Delta-G solvation = -73.161435 kcal Electronic energy + Delta-G solvation = -30751.257134 eV Core-core repulsion = 26506.427888 eV Total energy + Delta-G solvation = -4244.829246 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 328.170 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -49.24512 -47.21934 -40.64428 -38.50370 -36.64978 -35.22676 -32.29904 -32.18045 -31.49498 -29.06811 -28.27607 -25.82283 -24.41347 -24.28542 -22.90218 -22.50251 -21.91741 -20.12244 -19.53960 -18.46431 -17.71150 -17.55117 -16.88551 -16.57962 -16.24389 -15.70941 -14.79214 -14.70068 -14.55241 -14.29065 -14.13649 -13.90506 -13.67451 -13.50130 -13.36375 -13.20627 -12.87801 -12.68662 -12.54134 -12.40278 -12.04062 -11.97743 -11.95818 -11.83285 -11.36251 -11.04140 -10.97730 -10.93739 -10.77762 -10.65776 -10.61164 -10.37180 -10.10810 -10.09979 -9.66783 -9.62342 -9.55126 -8.62075 -8.31750 -6.86147 -5.70899 -3.05012 2.40099 2.87145 3.16699 3.41151 3.44729 3.45973 3.46775 3.84956 4.05802 4.23973 4.27520 4.49080 4.62773 4.70961 5.00028 5.12403 5.23406 5.24621 5.29022 5.34466 5.37970 5.44969 5.50069 5.53043 5.60248 5.62589 5.70275 5.71685 5.75868 5.85840 6.02882 6.13891 6.19843 6.33357 6.37017 6.49098 6.59456 6.74245 6.95275 7.06627 7.51808 7.55289 7.61202 7.81783 8.19102 8.24998 9.20642 9.80328 10.46235 11.40321 Molecular weight = 328.17amu Principal moments of inertia in cm(-1) A = 0.023588 B = 0.003609 C = 0.003494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1186.760897 B = 7756.216856 C = 8012.396589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.335 3.665 3 F -0.187 7.187 4 F -0.195 7.195 5 C -0.215 4.215 6 C 0.552 3.448 7 O -0.530 6.530 8 N -0.577 5.577 9 C 0.105 3.895 10 C -0.133 4.133 11 C -0.128 4.128 12 C 0.156 3.844 13 H 0.060 0.940 14 C 0.130 3.870 15 H 0.100 0.900 16 C -0.151 4.151 17 C 0.181 3.819 18 N -0.598 5.598 19 C -0.227 4.227 20 H 0.077 0.923 21 C -0.006 4.006 22 N -0.922 5.922 23 Si 0.912 3.088 24 H -0.285 1.285 25 H -0.290 1.290 26 H -0.285 1.285 27 C -0.124 4.124 28 C -0.151 4.151 29 H 0.093 0.907 30 H 0.083 0.917 31 H 0.091 0.909 32 H 0.068 0.932 33 H 0.084 0.916 34 H 0.066 0.934 35 H 0.069 0.931 36 H 0.059 0.941 37 H 0.064 0.936 38 H 0.061 0.939 39 H 0.058 0.942 40 H 0.041 0.959 41 H 0.052 0.948 42 H 0.253 0.747 43 H 0.112 0.888 44 H 0.111 0.889 45 H 0.113 0.887 46 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.429 -12.205 -17.417 21.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C 0.298 3.702 3 F -0.168 7.168 4 F -0.176 7.176 5 C -0.219 4.219 6 C 0.337 3.663 7 O -0.406 6.406 8 N -0.308 5.308 9 C -0.018 4.018 10 C -0.171 4.171 11 C -0.168 4.168 12 C 0.048 3.952 13 H 0.078 0.922 14 C 0.026 3.974 15 H 0.118 0.882 16 C -0.190 4.190 17 C 0.056 3.944 18 N -0.323 5.323 19 C -0.355 4.355 20 H 0.095 0.905 21 C -0.202 4.202 22 N -0.569 5.569 23 Si 0.742 3.258 24 H -0.212 1.212 25 H -0.216 1.216 26 H -0.212 1.212 27 C -0.161 4.161 28 C -0.188 4.188 29 H 0.112 0.888 30 H 0.102 0.898 31 H 0.110 0.890 32 H 0.086 0.914 33 H 0.103 0.897 34 H 0.085 0.915 35 H 0.088 0.912 36 H 0.078 0.922 37 H 0.083 0.917 38 H 0.079 0.921 39 H 0.077 0.923 40 H 0.060 0.940 41 H 0.070 0.930 42 H 0.063 0.937 43 H 0.130 0.870 44 H 0.129 0.871 45 H 0.131 0.869 46 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 1.926 -12.229 -16.825 20.889 hybrid contribution 0.013 1.087 0.259 1.117 sum 1.938 -11.142 -16.567 20.059 Atomic orbital electron populations 1.22715 0.90545 1.05716 1.05745 1.20006 0.93918 0.75222 0.81048 1.93055 1.90401 1.36711 1.96605 1.92999 1.90674 1.81084 1.52867 1.22352 1.06889 0.97986 0.94709 1.18938 0.82807 0.79953 0.84609 1.90712 1.28484 1.62558 1.58865 1.47525 1.24296 1.32721 1.26214 1.21966 0.86528 0.96819 0.96463 1.22203 1.02093 0.94067 0.98778 1.22395 1.00115 1.00146 0.94121 1.21369 0.95365 0.90419 0.88086 0.92240 1.21816 0.99927 0.92935 0.82760 0.88222 1.23112 0.98376 1.00525 0.96979 1.21168 0.98579 0.83631 0.90997 1.44707 1.74645 1.12193 1.00750 1.18988 1.35901 0.88477 0.92166 0.90493 1.24783 1.01389 0.98161 0.95907 1.69941 1.51109 1.33418 1.02423 0.86206 0.78360 0.83593 0.77634 1.21177 1.21628 1.21209 1.23078 0.99370 0.88648 1.05049 1.23257 0.89787 1.00758 1.05033 0.88801 0.89814 0.89032 0.91424 0.89744 0.91512 0.91224 0.92176 0.91691 0.92065 0.92284 0.94040 0.93002 0.93697 0.86960 0.87100 0.86907 0.87160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.88 9.30 37.16 0.35 -1.54 16 2 C 0.33 3.69 2.06 -26.73 -0.05 3.63 16 3 F -0.19 -2.34 13.75 2.25 0.03 -2.31 16 4 F -0.20 -2.04 15.64 2.25 0.04 -2.01 16 5 C -0.22 -2.42 0.73 -155.66 -0.11 -2.54 16 6 C 0.55 8.31 5.94 -10.99 -0.07 8.24 16 7 O -0.53 -9.71 16.29 5.56 0.09 -9.62 16 8 N -0.58 -8.86 2.75 -165.02 -0.45 -9.31 16 9 C 0.10 1.34 4.81 -3.64 -0.02 1.33 16 10 C -0.13 -1.83 5.97 -25.79 -0.15 -1.98 16 11 C -0.13 -2.25 5.21 -26.02 -0.14 -2.39 16 12 C 0.16 3.17 3.56 -66.35 -0.24 2.94 16 13 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 14 C 0.13 2.42 3.03 -67.29 -0.20 2.22 16 15 H 0.10 2.10 7.00 -51.93 -0.36 1.74 16 16 C -0.15 -2.88 6.10 -25.16 -0.15 -3.04 16 17 C 0.18 4.36 5.19 -2.88 -0.01 4.35 16 18 N -0.60 -14.89 2.91 -162.19 -0.47 -15.37 16 19 C -0.23 -6.23 10.29 -15.06 -0.15 -6.38 16 20 H 0.08 2.04 7.83 -52.49 -0.41 1.63 16 21 C -0.01 -0.17 5.49 -17.43 -0.10 -0.27 16 22 N -0.92 -26.86 10.33 55.49 0.57 -26.29 16 23 Si 0.91 22.05 29.55 -169.99 -5.02 17.03 16 24 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 25 H -0.29 -7.10 7.11 56.52 0.40 -6.69 16 26 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 27 C -0.12 -1.11 9.64 -26.73 -0.26 -1.37 16 28 C -0.15 -1.32 7.64 -26.73 -0.20 -1.53 16 29 H 0.09 1.10 7.47 -51.93 -0.39 0.71 16 30 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.07 0.83 7.61 -51.93 -0.39 0.43 16 33 H 0.08 0.94 4.01 -51.93 -0.21 0.73 16 34 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.07 1.00 7.10 -51.93 -0.37 0.63 16 36 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 37 H 0.06 1.21 7.13 -51.93 -0.37 0.84 16 38 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 39 H 0.06 1.04 6.93 -51.93 -0.36 0.68 16 40 H 0.04 1.09 7.60 -51.93 -0.39 0.70 16 41 H 0.05 1.40 7.30 -51.93 -0.38 1.02 16 42 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 43 H 0.11 1.06 8.14 -51.93 -0.42 0.63 16 44 H 0.11 0.81 7.90 -51.93 -0.41 0.40 16 45 H 0.11 0.85 7.66 -51.93 -0.40 0.45 16 46 H 0.11 0.94 8.00 -51.93 -0.42 0.52 16 LS Contribution 356.34 15.07 5.37 5.37 Total: -1.00 -30.81 356.34 -8.32 -39.13 By element: Atomic # 1 Polarization: 8.65 SS G_CDS: -6.96 Total: 1.69 kcal Atomic # 6 Polarization: 3.20 SS G_CDS: -1.52 Total: 1.68 kcal Atomic # 7 Polarization: -50.62 SS G_CDS: -0.35 Total: -50.97 kcal Atomic # 8 Polarization: -9.71 SS G_CDS: 0.09 Total: -9.62 kcal Atomic # 9 Polarization: -4.39 SS G_CDS: 0.07 Total: -4.32 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -30.81 -8.32 -39.13 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049729426.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.033 kcal (2) G-P(sol) polarization free energy of solvation -30.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.129 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds