Wall clock time and date at job start Tue Mar 31 2020 14:53:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 F 1.39902 * 109.47455 * 2 1 4 4 F 1.39905 * 109.46952 * 240.00340 * 2 1 3 5 5 C 1.52998 * 109.47103 * 120.00408 * 2 1 3 6 6 C 1.50705 * 115.54742 * 295.97981 * 5 2 1 7 7 O 1.21280 * 119.99798 * 96.99334 * 6 5 2 8 8 N 1.34771 * 119.99864 * 276.98466 * 6 5 2 9 9 C 1.46796 * 119.58494 * 355.07449 * 8 6 5 10 10 C 1.53458 * 107.59994 * 127.91639 * 9 8 6 11 11 C 1.54349 * 108.14854 * 58.49359 * 10 9 8 12 12 C 1.53013 * 109.93425 * 295.48069 * 11 10 9 13 13 H 1.08998 * 112.10414 * 291.62331 * 12 11 10 14 14 C 1.45128 * 119.57201 * 175.04363 * 8 6 5 15 15 H 1.08994 * 109.97358 * 348.09897 * 14 8 6 16 16 C 1.54426 * 112.29864 * 110.94509 * 14 8 6 17 17 C 1.54567 * 102.44820 * 156.91720 * 16 14 8 18 18 N 1.47121 * 107.25241 * 338.32354 * 17 16 14 19 19 C 1.36937 * 125.76856 * 177.66705 * 18 17 16 20 20 H 1.08001 * 120.00330 * 179.69261 * 19 18 17 21 21 C 1.38816 * 119.99772 * 359.69482 * 19 18 17 22 22 N 1.31614 * 119.99906 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 120.00027 * 179.97438 * 21 19 18 24 24 H 1.48503 * 109.46960 * 59.99616 * 23 21 19 25 25 H 1.48493 * 109.47205 * 179.97438 * 23 21 19 26 26 H 1.48498 * 109.46719 * 300.00160 * 23 21 19 27 27 C 1.53002 * 117.52114 * 81.68436 * 5 2 1 28 28 C 1.53001 * 60.00022 * 107.48297 * 27 5 2 29 29 H 1.08996 * 109.47261 * 295.97184 * 1 2 3 30 30 H 1.09005 * 109.46966 * 55.96682 * 1 2 3 31 31 H 1.08998 * 109.47095 * 175.96641 * 1 2 3 32 32 H 1.08999 * 109.83173 * 247.44648 * 9 8 6 33 33 H 1.09003 * 109.82988 * 8.39129 * 9 8 6 34 34 H 1.09003 * 109.64042 * 177.76518 * 10 9 8 35 35 H 1.08991 * 109.64509 * 298.18817 * 10 9 8 36 36 H 1.08999 * 108.90302 * 175.86535 * 11 10 9 37 37 H 1.08994 * 110.38027 * 56.02471 * 11 10 9 38 38 H 1.09007 * 110.80705 * 275.15596 * 16 14 8 39 39 H 1.09003 * 110.81413 * 38.48057 * 16 14 8 40 40 H 1.08996 * 109.88903 * 218.90869 * 17 16 14 41 41 H 1.09000 * 109.88390 * 97.72885 * 17 16 14 42 42 H 0.97000 * 119.99723 * 180.02562 * 22 21 19 43 43 H 1.09001 * 117.49899 * 214.97436 * 27 5 2 44 44 H 1.08994 * 117.49386 * 359.97438 * 27 5 2 45 45 H 1.09004 * 117.49604 * 252.50971 * 28 27 5 46 46 H 1.08992 * 117.50199 * 107.49322 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 9 1.9964 1.3190 0.0000 4 9 1.9963 -0.6595 -1.1424 5 6 2.0400 -0.7213 1.2492 6 6 1.6950 -0.0685 2.5630 7 8 0.7339 -0.4509 3.1962 8 7 2.4547 0.9400 3.0343 9 6 3.6767 1.3233 2.3168 10 6 3.6143 2.8366 2.0696 11 6 3.4926 3.5424 3.4368 12 6 2.1677 3.1650 4.1027 13 1 1.3099 3.5812 3.5744 14 6 2.0538 1.6336 4.2444 15 1 1.0333 1.3586 4.5104 16 6 3.0039 1.3453 5.4271 17 6 2.7777 2.5701 6.3424 18 7 2.2304 3.6471 5.5028 19 6 1.8488 4.8874 5.9401 20 1 1.4618 5.6118 5.2388 21 6 1.9594 5.2136 7.2848 22 7 2.4305 4.3306 8.1396 23 14 1.4395 6.9058 7.8813 24 1 0.0013 7.1173 7.5778 25 1 1.6549 7.0016 9.3474 26 1 2.2485 7.9433 7.1926 27 6 2.0906 -2.2500 1.2117 28 6 3.3871 -1.4399 1.1496 29 1 -0.3633 0.4500 0.9238 30 1 -0.3633 0.5752 -0.8517 31 1 -0.3633 -1.0251 -0.0723 32 1 4.5513 1.0830 2.9213 33 1 3.7277 0.7949 1.3648 34 1 4.5269 3.1645 1.5719 35 1 2.7521 3.0706 1.4452 36 1 3.5214 4.6209 3.2813 37 1 4.3169 3.2525 4.0884 38 1 2.7203 0.4239 5.9359 39 1 4.0392 1.2964 5.0893 40 1 3.7247 2.8860 6.7799 41 1 2.0685 2.3178 7.1308 42 1 2.5074 4.5584 9.0793 43 1 1.8744 -2.7836 2.1372 44 1 1.7601 -2.7421 0.2970 45 1 3.9098 -1.3992 0.1939 46 1 4.0238 -1.4406 2.0342 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049729426.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:53:01 Heat of formation + Delta-G solvation = -90.349121 kcal Electronic energy + Delta-G solvation = -30752.002448 eV Core-core repulsion = 26506.427888 eV Total energy + Delta-G solvation = -4245.574560 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 328.170 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -50.09176 -48.07178 -41.89744 -39.89444 -37.65930 -36.77493 -34.12900 -33.66353 -32.27138 -30.91521 -29.85965 -27.09892 -26.07075 -25.52357 -23.75054 -23.62744 -23.13001 -21.96331 -20.75495 -19.71079 -18.93397 -18.68413 -18.43180 -17.63248 -17.23367 -16.78979 -16.75927 -16.09289 -15.79317 -15.74587 -15.23155 -15.08086 -14.82167 -14.74578 -14.33497 -14.27126 -14.21068 -14.00251 -13.74602 -13.54415 -13.47451 -13.29748 -13.11059 -12.82099 -12.77995 -12.63008 -12.51028 -12.33562 -12.32208 -12.11586 -11.96945 -11.76598 -11.62007 -11.56200 -11.35598 -11.22493 -10.81571 -10.70726 -9.68076 -8.90592 -7.84607 -5.20517 1.26886 1.45082 1.48237 1.54301 1.75443 2.34133 2.49162 2.59715 3.01796 3.14652 3.32236 3.35827 3.49667 3.54353 3.81239 3.86188 3.87550 3.93400 4.03653 4.10881 4.13113 4.34807 4.44836 4.54034 4.55944 4.58615 4.61517 4.62079 4.67162 4.75460 4.81004 4.87406 4.93658 4.94441 5.06682 5.07957 5.15413 5.33720 5.39511 5.53178 5.57527 5.62997 5.72516 6.17101 6.32203 6.99815 7.08553 7.74297 8.39777 9.25232 Molecular weight = 328.17amu Principal moments of inertia in cm(-1) A = 0.023588 B = 0.003609 C = 0.003494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1186.760897 B = 7756.216856 C = 8012.396589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.337 3.663 3 F -0.197 7.197 4 F -0.188 7.188 5 C -0.233 4.233 6 C 0.551 3.449 7 O -0.569 6.569 8 N -0.578 5.578 9 C 0.104 3.896 10 C -0.122 4.122 11 C -0.116 4.116 12 C 0.152 3.848 13 H 0.047 0.953 14 C 0.146 3.854 15 H 0.069 0.931 16 C -0.132 4.132 17 C 0.192 3.808 18 N -0.618 5.618 19 C -0.238 4.238 20 H 0.080 0.920 21 C -0.063 4.063 22 N -0.951 5.951 23 Si 0.977 3.023 24 H -0.280 1.280 25 H -0.294 1.294 26 H -0.276 1.276 27 C -0.115 4.115 28 C -0.135 4.135 29 H 0.069 0.931 30 H 0.097 0.903 31 H 0.106 0.894 32 H 0.083 0.917 33 H 0.110 0.890 34 H 0.098 0.902 35 H 0.065 0.935 36 H 0.047 0.953 37 H 0.056 0.944 38 H 0.067 0.933 39 H 0.082 0.918 40 H 0.013 0.987 41 H 0.011 0.989 42 H 0.247 0.753 43 H 0.105 0.895 44 H 0.132 0.868 45 H 0.134 0.866 46 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.714 -13.200 -20.341 24.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C 0.300 3.700 3 F -0.178 7.178 4 F -0.168 7.168 5 C -0.237 4.237 6 C 0.339 3.661 7 O -0.448 6.448 8 N -0.308 5.308 9 C -0.017 4.017 10 C -0.161 4.161 11 C -0.156 4.156 12 C 0.045 3.955 13 H 0.065 0.935 14 C 0.041 3.959 15 H 0.087 0.913 16 C -0.171 4.171 17 C 0.067 3.933 18 N -0.343 5.343 19 C -0.367 4.367 20 H 0.098 0.902 21 C -0.256 4.256 22 N -0.600 5.600 23 Si 0.805 3.195 24 H -0.206 1.206 25 H -0.221 1.221 26 H -0.201 1.201 27 C -0.152 4.152 28 C -0.171 4.171 29 H 0.088 0.912 30 H 0.115 0.885 31 H 0.125 0.875 32 H 0.101 0.899 33 H 0.128 0.872 34 H 0.116 0.884 35 H 0.084 0.916 36 H 0.066 0.934 37 H 0.074 0.926 38 H 0.086 0.914 39 H 0.101 0.899 40 H 0.031 0.969 41 H 0.029 0.971 42 H 0.056 0.944 43 H 0.124 0.876 44 H 0.150 0.850 45 H 0.152 0.848 46 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 3.227 -13.232 -19.817 24.046 hybrid contribution -0.438 1.367 1.126 1.824 sum 2.790 -11.865 -18.691 22.314 Atomic orbital electron populations 1.22729 0.90203 1.06793 1.05043 1.19984 0.94196 0.74711 0.81068 1.93034 1.90535 1.37564 1.96664 1.93013 1.90615 1.80866 1.52343 1.22191 1.09907 0.99177 0.92393 1.19546 0.81755 0.79240 0.85550 1.90693 1.30057 1.63654 1.60384 1.47526 1.25395 1.32669 1.25196 1.22208 0.85641 0.96264 0.97616 1.22142 1.03526 0.94299 0.96102 1.22178 0.97504 0.99855 0.96085 1.21552 0.96577 0.91429 0.85980 0.93457 1.21279 0.98307 0.92024 0.84301 0.91256 1.22910 0.99856 0.98233 0.96113 1.20848 0.95827 0.85449 0.91178 1.44947 1.74643 1.11781 1.02920 1.19352 1.35222 0.89634 0.92514 0.90194 1.25596 1.02073 1.01767 0.96141 1.70162 1.52513 1.35117 1.02175 0.85182 0.78124 0.79567 0.76633 1.20611 1.22062 1.20148 1.23215 0.99318 0.86875 1.05801 1.23448 0.88969 0.98341 1.06368 0.91197 0.88463 0.87482 0.89871 0.87204 0.88388 0.91578 0.93424 0.92566 0.91384 0.89904 0.96921 0.97068 0.94420 0.87638 0.84960 0.84813 0.86616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.45 9.30 71.98 0.67 -2.78 16 2 C 0.34 6.48 2.06 30.59 0.06 6.54 16 3 F -0.20 -4.40 13.75 44.97 0.62 -3.79 16 4 F -0.19 -3.20 15.64 44.97 0.70 -2.50 16 5 C -0.23 -4.60 0.73 -52.93 -0.04 -4.64 16 6 C 0.55 15.96 5.94 87.66 0.52 16.48 16 7 O -0.57 -20.99 16.29 -3.03 -0.05 -21.04 16 8 N -0.58 -16.96 2.75 -794.39 -2.19 -19.15 16 9 C 0.10 2.33 4.81 86.48 0.42 2.74 16 10 C -0.12 -3.03 5.97 31.21 0.19 -2.84 16 11 C -0.12 -4.01 5.21 31.06 0.16 -3.85 16 12 C 0.15 6.29 3.56 45.08 0.16 6.45 16 13 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 14 C 0.15 5.54 3.03 46.14 0.14 5.68 16 15 H 0.07 3.06 7.00 -2.39 -0.02 3.04 16 16 C -0.13 -5.09 6.10 31.61 0.19 -4.90 16 17 C 0.19 9.71 5.19 86.79 0.45 10.16 16 18 N -0.62 -31.94 2.91 -667.05 -1.94 -33.88 16 19 C -0.24 -13.47 10.29 84.03 0.86 -12.61 16 20 H 0.08 4.34 7.83 -2.91 -0.02 4.32 16 21 C -0.06 -3.61 5.49 84.86 0.47 -3.14 16 22 N -0.95 -57.79 10.33 21.65 0.22 -57.57 16 23 Si 0.98 46.35 29.55 68.60 2.03 48.38 16 24 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 25 H -0.29 -14.06 7.11 99.48 0.71 -13.35 16 26 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 27 C -0.11 -1.69 9.64 30.60 0.29 -1.39 16 28 C -0.13 -1.79 7.64 30.60 0.23 -1.55 16 29 H 0.07 1.62 7.47 -2.39 -0.02 1.61 16 30 H 0.10 1.46 8.14 -2.38 -0.02 1.44 16 31 H 0.11 1.56 8.14 -2.39 -0.02 1.54 16 32 H 0.08 1.68 7.61 -2.39 -0.02 1.66 16 33 H 0.11 1.97 4.01 -2.39 -0.01 1.97 16 34 H 0.10 1.91 8.14 -2.39 -0.02 1.89 16 35 H 0.07 1.73 7.10 -2.39 -0.02 1.71 16 36 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 37 H 0.06 2.04 7.13 -2.39 -0.02 2.02 16 38 H 0.07 2.53 8.14 -2.38 -0.02 2.51 16 39 H 0.08 2.81 6.93 -2.39 -0.02 2.79 16 40 H 0.01 0.70 7.60 -2.39 -0.02 0.68 16 41 H 0.01 0.64 7.30 -2.39 -0.02 0.62 16 42 H 0.25 14.64 8.31 -92.71 -0.77 13.87 16 43 H 0.11 1.74 8.14 -2.39 -0.02 1.72 16 44 H 0.13 1.38 7.90 -2.39 -0.02 1.37 16 45 H 0.13 1.29 7.66 -2.39 -0.02 1.27 16 46 H 0.12 1.47 8.00 -2.39 -0.02 1.45 16 Total: -1.00 -70.51 356.34 5.16 -65.35 By element: Atomic # 1 Polarization: 12.84 SS G_CDS: 0.99 Total: 13.83 kcal Atomic # 6 Polarization: 5.58 SS G_CDS: 4.78 Total: 10.36 kcal Atomic # 7 Polarization: -106.70 SS G_CDS: -3.91 Total: -110.60 kcal Atomic # 8 Polarization: -20.99 SS G_CDS: -0.05 Total: -21.04 kcal Atomic # 9 Polarization: -7.60 SS G_CDS: 1.32 Total: -6.28 kcal Atomic # 14 Polarization: 46.35 SS G_CDS: 2.03 Total: 48.38 kcal Total: -70.51 5.16 -65.35 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049729426.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.997 kcal (2) G-P(sol) polarization free energy of solvation -70.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.352 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds