Wall clock time and date at job start Tue Mar 31 2020 14:53:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 F 1.39896 * 109.47259 * 2 1 4 4 F 1.39905 * 109.46905 * 239.99924 * 2 1 3 5 5 C 1.53003 * 109.46985 * 120.00128 * 2 1 3 6 6 C 1.50695 * 115.54922 * 302.46869 * 5 2 1 7 7 O 1.21281 * 120.00327 * 109.55051 * 6 5 2 8 8 N 1.34776 * 120.00268 * 289.55053 * 6 5 2 9 9 C 1.46796 * 119.57355 * 354.28464 * 8 6 5 10 10 C 1.53464 * 107.60249 * 232.01630 * 9 8 6 11 11 C 1.52735 * 108.43737 * 301.92428 * 10 9 8 12 12 C 1.53015 * 110.79942 * 63.77651 * 11 10 9 13 13 H 1.08996 * 111.38643 * 69.70695 * 12 11 10 14 14 C 1.45917 * 118.89438 * 174.84648 * 8 6 5 15 15 H 1.09006 * 111.00550 * 12.45423 * 14 8 6 16 16 C 1.54418 * 110.92807 * 248.91570 * 14 8 6 17 17 C 1.54552 * 102.36410 * 204.05841 * 16 14 8 18 18 N 1.47116 * 107.26332 * 22.02224 * 17 16 14 19 19 C 1.36938 * 125.76579 * 182.48247 * 18 17 16 20 20 H 1.07999 * 120.00423 * 184.74114 * 19 18 17 21 21 C 1.38820 * 119.99574 * 4.73535 * 19 18 17 22 22 N 1.31618 * 120.00036 * 5.86545 * 21 19 18 23 23 Si 1.86798 * 119.99653 * 185.86072 * 21 19 18 24 24 H 1.48497 * 109.47355 * 265.00807 * 23 21 19 25 25 H 1.48505 * 109.47299 * 25.01015 * 23 21 19 26 26 H 1.48506 * 109.46997 * 145.01127 * 23 21 19 27 27 C 1.53000 * 117.49830 * 88.14308 * 5 2 1 28 28 C 1.52998 * 117.49588 * 156.80173 * 5 2 1 29 29 H 1.08996 * 109.47009 * 305.24084 * 1 2 3 30 30 H 1.09001 * 109.47010 * 65.23649 * 1 2 3 31 31 H 1.08996 * 109.47180 * 185.23540 * 1 2 3 32 32 H 1.09007 * 109.83602 * 112.49275 * 9 8 6 33 33 H 1.09003 * 109.83476 * 351.54300 * 9 8 6 34 34 H 1.09000 * 109.64151 * 182.23989 * 10 9 8 35 35 H 1.09002 * 109.81387 * 61.71088 * 10 9 8 36 36 H 1.08999 * 109.21581 * 303.43379 * 11 10 9 37 37 H 1.08995 * 109.21055 * 184.10995 * 11 10 9 38 38 H 1.09002 * 110.80695 * 322.50050 * 16 14 8 39 39 H 1.08999 * 110.81906 * 85.82734 * 16 14 8 40 40 H 1.08999 * 109.98708 * 262.54231 * 17 16 14 41 41 H 1.08997 * 109.76367 * 141.37791 * 17 16 14 42 42 H 0.96998 * 119.99664 * 179.97438 * 22 21 19 43 43 H 1.09004 * 117.49270 * 215.00241 * 27 5 2 44 44 H 1.09001 * 117.49987 * 0.02562 * 27 5 2 45 45 H 1.08997 * 117.50066 * 359.97085 * 28 5 2 46 46 H 1.08997 * 117.49690 * 144.97714 * 28 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 9 1.9964 1.3189 0.0000 4 9 1.9963 -0.6595 -1.1423 5 6 2.0400 -0.7213 1.2493 6 6 1.5685 -0.1560 2.5642 7 8 0.7738 -0.7744 3.2402 8 7 2.0298 1.0370 2.9890 9 6 3.0838 1.7189 2.2282 10 6 4.2068 2.0781 3.2105 11 6 3.6208 2.9571 4.3136 12 6 2.5744 2.1879 5.1229 13 1 3.0352 1.4080 5.7289 14 6 1.4732 1.6146 4.2080 15 1 0.8807 0.8800 4.7533 16 6 0.6302 2.8685 3.8892 17 6 0.6752 3.6458 5.2242 18 7 1.8585 3.1774 5.9624 19 6 2.2320 3.5828 7.2160 20 1 3.1620 3.2353 7.6412 21 6 1.4153 4.4405 7.9401 22 7 0.2306 4.7724 7.4725 23 14 1.9978 5.1235 9.5783 24 1 1.4820 4.2728 10.6808 25 1 3.4824 5.1308 9.6119 26 1 1.4920 6.5098 9.7446 27 6 2.2340 -2.2363 1.1605 28 6 3.4515 -1.3094 1.1986 29 1 -0.3633 0.5930 0.8393 30 1 -0.3633 0.4305 -0.9332 31 1 -0.3633 -1.0233 0.0938 32 1 2.6847 2.6264 1.7749 33 1 3.4685 1.0559 1.4532 34 1 4.9919 2.6229 2.6862 35 1 4.6205 1.1691 3.6472 36 1 3.1536 3.8333 3.8641 37 1 4.4219 3.2800 4.9785 38 1 1.0848 3.4464 3.0846 39 1 -0.3933 2.5928 3.6353 40 1 -0.2264 3.4449 5.8029 41 1 0.7608 4.7141 5.0260 42 1 -0.3401 5.3714 7.9787 43 1 2.0205 -2.8241 2.0533 44 1 1.9987 -2.7192 0.2120 45 1 4.0166 -1.1828 0.2752 46 1 4.0392 -1.2871 2.1163 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049729429.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:53:05 Heat of formation + Delta-G solvation = -71.465601 kcal Electronic energy + Delta-G solvation = -30746.084578 eV Core-core repulsion = 26501.328869 eV Total energy + Delta-G solvation = -4244.755709 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 328.170 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -49.29485 -47.27262 -40.60108 -38.51668 -36.57452 -35.22786 -32.43549 -32.18945 -31.54126 -29.07925 -28.27973 -25.77064 -24.37895 -24.30269 -22.86462 -22.59768 -21.91878 -20.09653 -19.58551 -18.23993 -17.93294 -17.62753 -16.89057 -16.57721 -16.20878 -15.65287 -14.80260 -14.73641 -14.69545 -14.27757 -14.10506 -13.78234 -13.65974 -13.54696 -13.44326 -13.36953 -12.78451 -12.75107 -12.50770 -12.38328 -12.13420 -11.97367 -11.90359 -11.83175 -11.37129 -11.07695 -10.97225 -10.92873 -10.76586 -10.69493 -10.61790 -10.34239 -10.09864 -10.06685 -9.68232 -9.66288 -9.56159 -8.64389 -8.30732 -6.86364 -5.70442 -3.07219 2.40460 2.90472 3.17754 3.39727 3.44478 3.45384 3.47043 3.83623 4.01269 4.25343 4.28279 4.48146 4.62229 4.70794 5.01604 5.14007 5.20711 5.25834 5.28176 5.33187 5.35943 5.43849 5.51498 5.55340 5.58850 5.61162 5.66862 5.75582 5.79128 5.85379 6.01647 6.12322 6.18779 6.30646 6.35738 6.49150 6.57794 6.71972 6.92988 7.04927 7.47849 7.53245 7.63774 7.82023 8.19996 8.25461 9.19077 9.79373 10.45217 11.38616 Molecular weight = 328.17amu Principal moments of inertia in cm(-1) A = 0.025313 B = 0.003529 C = 0.003464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1105.899405 B = 7931.321187 C = 8080.394351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.334 3.666 3 F -0.188 7.188 4 F -0.195 7.195 5 C -0.217 4.217 6 C 0.550 3.450 7 O -0.531 6.531 8 N -0.581 5.581 9 C 0.108 3.892 10 C -0.135 4.135 11 C -0.128 4.128 12 C 0.155 3.845 13 H 0.058 0.942 14 C 0.131 3.869 15 H 0.105 0.895 16 C -0.151 4.151 17 C 0.175 3.825 18 N -0.597 5.597 19 C -0.227 4.227 20 H 0.077 0.923 21 C -0.006 4.006 22 N -0.919 5.919 23 Si 0.911 3.089 24 H -0.289 1.289 25 H -0.281 1.281 26 H -0.291 1.291 27 C -0.124 4.124 28 C -0.148 4.148 29 H 0.091 0.909 30 H 0.084 0.916 31 H 0.092 0.908 32 H 0.073 0.927 33 H 0.086 0.914 34 H 0.069 0.931 35 H 0.061 0.939 36 H 0.063 0.937 37 H 0.060 0.940 38 H 0.060 0.940 39 H 0.061 0.939 40 H 0.066 0.934 41 H 0.030 0.970 42 H 0.252 0.748 43 H 0.114 0.886 44 H 0.111 0.889 45 H 0.111 0.889 46 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.009 -10.609 -17.657 21.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C 0.297 3.703 3 F -0.169 7.169 4 F -0.176 7.176 5 C -0.221 4.221 6 C 0.336 3.664 7 O -0.407 6.407 8 N -0.312 5.312 9 C -0.014 4.014 10 C -0.174 4.174 11 C -0.168 4.168 12 C 0.047 3.953 13 H 0.076 0.924 14 C 0.028 3.972 15 H 0.123 0.877 16 C -0.190 4.190 17 C 0.050 3.950 18 N -0.321 5.321 19 C -0.355 4.355 20 H 0.095 0.905 21 C -0.203 4.203 22 N -0.566 5.566 23 Si 0.741 3.259 24 H -0.217 1.217 25 H -0.207 1.207 26 H -0.217 1.217 27 C -0.161 4.161 28 C -0.185 4.185 29 H 0.109 0.891 30 H 0.103 0.897 31 H 0.111 0.889 32 H 0.091 0.909 33 H 0.104 0.896 34 H 0.087 0.913 35 H 0.080 0.920 36 H 0.082 0.918 37 H 0.079 0.921 38 H 0.078 0.922 39 H 0.079 0.921 40 H 0.084 0.916 41 H 0.049 0.951 42 H 0.062 0.938 43 H 0.132 0.868 44 H 0.129 0.871 45 H 0.130 0.870 46 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 4.501 -10.708 -17.106 20.677 hybrid contribution 0.410 0.714 0.693 1.076 sum 4.912 -9.993 -16.414 19.834 Atomic orbital electron populations 1.22720 0.90593 1.06012 1.05436 1.20047 0.93909 0.75111 0.81214 1.93045 1.90348 1.36977 1.96559 1.93000 1.90663 1.81068 1.52852 1.22386 1.05261 0.99900 0.94589 1.18958 0.81340 0.81210 0.84939 1.90711 1.34559 1.59104 1.56361 1.47808 1.38142 1.19219 1.26033 1.22100 0.87591 0.97922 0.93777 1.21970 0.97211 1.00627 0.97583 1.22083 0.99411 0.98742 0.96571 1.21353 0.91349 0.91667 0.90962 0.92417 1.22033 0.95815 0.95519 0.83872 0.87697 1.23107 0.98798 0.96574 1.00506 1.21252 0.91660 0.95091 0.86979 1.44722 1.26708 1.45707 1.14986 1.19033 1.03045 1.23291 0.90161 0.90471 1.24801 0.96175 1.00656 0.98640 1.69945 1.09009 1.39050 1.38642 0.86119 0.77852 0.78296 0.83594 1.21653 1.20675 1.21683 1.23098 0.99451 0.88482 1.05083 1.23203 0.89089 1.01189 1.04993 0.89050 0.89710 0.88894 0.90874 0.89623 0.91274 0.91983 0.91847 0.92122 0.92172 0.92073 0.91616 0.95137 0.93752 0.86762 0.87072 0.87045 0.87186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.87 9.08 37.16 0.34 -1.53 16 2 C 0.33 3.61 2.08 -26.73 -0.06 3.56 16 3 F -0.19 -2.25 13.26 2.25 0.03 -2.22 16 4 F -0.19 -2.03 15.64 2.25 0.04 -1.99 16 5 C -0.22 -2.46 0.82 -155.66 -0.13 -2.58 16 6 C 0.55 8.28 6.00 -10.99 -0.07 8.21 16 7 O -0.53 -9.75 16.13 5.56 0.09 -9.66 16 8 N -0.58 -8.91 2.73 -164.44 -0.45 -9.36 16 9 C 0.11 1.41 4.27 -3.64 -0.02 1.40 16 10 C -0.14 -1.79 6.11 -26.63 -0.16 -1.95 16 11 C -0.13 -2.22 5.12 -26.86 -0.14 -2.36 16 12 C 0.16 3.14 3.53 -66.35 -0.23 2.90 16 13 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 14 C 0.13 2.45 3.15 -66.87 -0.21 2.24 16 15 H 0.11 2.21 6.98 -51.93 -0.36 1.85 16 16 C -0.15 -2.88 6.09 -25.17 -0.15 -3.04 16 17 C 0.18 4.21 5.29 -2.89 -0.02 4.19 16 18 N -0.60 -14.81 2.91 -162.21 -0.47 -15.28 16 19 C -0.23 -6.21 10.28 -15.06 -0.15 -6.36 16 20 H 0.08 2.05 7.83 -52.49 -0.41 1.64 16 21 C -0.01 -0.17 5.46 -17.43 -0.10 -0.27 16 22 N -0.92 -26.77 10.42 55.49 0.58 -26.19 16 23 Si 0.91 21.99 29.56 -169.99 -5.02 16.96 16 24 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 25 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 26 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 27 C -0.12 -1.15 9.50 -26.69 -0.25 -1.40 16 28 C -0.15 -1.33 8.29 -26.69 -0.22 -1.55 16 29 H 0.09 1.03 7.69 -51.93 -0.40 0.63 16 30 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.07 0.98 7.05 -51.92 -0.37 0.62 16 33 H 0.09 0.97 4.18 -51.93 -0.22 0.75 16 34 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.06 1.18 7.26 -51.93 -0.38 0.80 16 37 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 38 H 0.06 1.07 6.92 -51.93 -0.36 0.72 16 39 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 40 H 0.07 1.78 6.88 -51.93 -0.36 1.42 16 41 H 0.03 0.80 7.97 -51.93 -0.41 0.38 16 42 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 43 H 0.11 1.13 8.08 -51.93 -0.42 0.71 16 44 H 0.11 0.85 7.71 -51.93 -0.40 0.45 16 45 H 0.11 0.86 7.85 -51.93 -0.41 0.45 16 46 H 0.11 0.99 8.14 -51.93 -0.42 0.56 16 LS Contribution 356.89 15.07 5.38 5.38 Total: -1.00 -30.65 356.89 -8.41 -39.06 By element: Atomic # 1 Polarization: 8.86 SS G_CDS: -7.01 Total: 1.86 kcal Atomic # 6 Polarization: 3.02 SS G_CDS: -1.57 Total: 1.45 kcal Atomic # 7 Polarization: -50.49 SS G_CDS: -0.34 Total: -50.84 kcal Atomic # 8 Polarization: -9.75 SS G_CDS: 0.09 Total: -9.66 kcal Atomic # 9 Polarization: -4.28 SS G_CDS: 0.07 Total: -4.21 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -30.65 -8.41 -39.06 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049729429.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.404 kcal (2) G-P(sol) polarization free energy of solvation -30.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.061 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds