Wall clock time and date at job start Tue Mar 31 2020 14:53:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 F 1.39896 * 109.47259 * 2 1 4 4 F 1.39905 * 109.46905 * 239.99924 * 2 1 3 5 5 C 1.53003 * 109.46985 * 120.00128 * 2 1 3 6 6 C 1.50695 * 115.54922 * 302.46869 * 5 2 1 7 7 O 1.21281 * 120.00327 * 109.55051 * 6 5 2 8 8 N 1.34776 * 120.00268 * 289.55053 * 6 5 2 9 9 C 1.46796 * 119.57355 * 354.28464 * 8 6 5 10 10 C 1.53464 * 107.60249 * 232.01630 * 9 8 6 11 11 C 1.52735 * 108.43737 * 301.92428 * 10 9 8 12 12 C 1.53015 * 110.79942 * 63.77651 * 11 10 9 13 13 H 1.08996 * 111.38643 * 69.70695 * 12 11 10 14 14 C 1.45917 * 118.89438 * 174.84648 * 8 6 5 15 15 H 1.09006 * 111.00550 * 12.45423 * 14 8 6 16 16 C 1.54418 * 110.92807 * 248.91570 * 14 8 6 17 17 C 1.54552 * 102.36410 * 204.05841 * 16 14 8 18 18 N 1.47116 * 107.26332 * 22.02224 * 17 16 14 19 19 C 1.36938 * 125.76579 * 182.48247 * 18 17 16 20 20 H 1.07999 * 120.00423 * 184.74114 * 19 18 17 21 21 C 1.38820 * 119.99574 * 4.73535 * 19 18 17 22 22 N 1.31618 * 120.00036 * 5.86545 * 21 19 18 23 23 Si 1.86798 * 119.99653 * 185.86072 * 21 19 18 24 24 H 1.48497 * 109.47355 * 265.00807 * 23 21 19 25 25 H 1.48505 * 109.47299 * 25.01015 * 23 21 19 26 26 H 1.48506 * 109.46997 * 145.01127 * 23 21 19 27 27 C 1.53000 * 117.49830 * 88.14308 * 5 2 1 28 28 C 1.52998 * 117.49588 * 156.80173 * 5 2 1 29 29 H 1.08996 * 109.47009 * 305.24084 * 1 2 3 30 30 H 1.09001 * 109.47010 * 65.23649 * 1 2 3 31 31 H 1.08996 * 109.47180 * 185.23540 * 1 2 3 32 32 H 1.09007 * 109.83602 * 112.49275 * 9 8 6 33 33 H 1.09003 * 109.83476 * 351.54300 * 9 8 6 34 34 H 1.09000 * 109.64151 * 182.23989 * 10 9 8 35 35 H 1.09002 * 109.81387 * 61.71088 * 10 9 8 36 36 H 1.08999 * 109.21581 * 303.43379 * 11 10 9 37 37 H 1.08995 * 109.21055 * 184.10995 * 11 10 9 38 38 H 1.09002 * 110.80695 * 322.50050 * 16 14 8 39 39 H 1.08999 * 110.81906 * 85.82734 * 16 14 8 40 40 H 1.08999 * 109.98708 * 262.54231 * 17 16 14 41 41 H 1.08997 * 109.76367 * 141.37791 * 17 16 14 42 42 H 0.96998 * 119.99664 * 179.97438 * 22 21 19 43 43 H 1.09004 * 117.49270 * 215.00241 * 27 5 2 44 44 H 1.09001 * 117.49987 * 0.02562 * 27 5 2 45 45 H 1.08997 * 117.50066 * 359.97085 * 28 5 2 46 46 H 1.08997 * 117.49690 * 144.97714 * 28 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 9 1.9964 1.3189 0.0000 4 9 1.9963 -0.6595 -1.1423 5 6 2.0400 -0.7213 1.2493 6 6 1.5685 -0.1560 2.5642 7 8 0.7738 -0.7744 3.2402 8 7 2.0298 1.0370 2.9890 9 6 3.0838 1.7189 2.2282 10 6 4.2068 2.0781 3.2105 11 6 3.6208 2.9571 4.3136 12 6 2.5744 2.1879 5.1229 13 1 3.0352 1.4080 5.7289 14 6 1.4732 1.6146 4.2080 15 1 0.8807 0.8800 4.7533 16 6 0.6302 2.8685 3.8892 17 6 0.6752 3.6458 5.2242 18 7 1.8585 3.1774 5.9624 19 6 2.2320 3.5828 7.2160 20 1 3.1620 3.2353 7.6412 21 6 1.4153 4.4405 7.9401 22 7 0.2306 4.7724 7.4725 23 14 1.9978 5.1235 9.5783 24 1 1.4820 4.2728 10.6808 25 1 3.4824 5.1308 9.6119 26 1 1.4920 6.5098 9.7446 27 6 2.2340 -2.2363 1.1605 28 6 3.4515 -1.3094 1.1986 29 1 -0.3633 0.5930 0.8393 30 1 -0.3633 0.4305 -0.9332 31 1 -0.3633 -1.0233 0.0938 32 1 2.6847 2.6264 1.7749 33 1 3.4685 1.0559 1.4532 34 1 4.9919 2.6229 2.6862 35 1 4.6205 1.1691 3.6472 36 1 3.1536 3.8333 3.8641 37 1 4.4219 3.2800 4.9785 38 1 1.0848 3.4464 3.0846 39 1 -0.3933 2.5928 3.6353 40 1 -0.2264 3.4449 5.8029 41 1 0.7608 4.7141 5.0260 42 1 -0.3401 5.3714 7.9787 43 1 2.0205 -2.8241 2.0533 44 1 1.9987 -2.7192 0.2120 45 1 4.0166 -1.1828 0.2752 46 1 4.0392 -1.2871 2.1163 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049729429.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:53:04 Heat of formation + Delta-G solvation = -88.397028 kcal Electronic energy + Delta-G solvation = -30746.818780 eV Core-core repulsion = 26501.328869 eV Total energy + Delta-G solvation = -4245.489911 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 328.170 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -50.12479 -48.10260 -41.86413 -39.90324 -37.59549 -36.77777 -34.13351 -33.77604 -32.31878 -30.92276 -29.86356 -27.06271 -26.07563 -25.49320 -23.78516 -23.57669 -23.18637 -21.96387 -20.80749 -19.41446 -19.14130 -18.77714 -18.46882 -17.56320 -17.27703 -16.81060 -16.64978 -16.10826 -15.85187 -15.79909 -15.17028 -15.07437 -14.82482 -14.72050 -14.56222 -14.30569 -14.07681 -14.02093 -13.77650 -13.58600 -13.45602 -13.28348 -13.05229 -12.88230 -12.77756 -12.60192 -12.53110 -12.33590 -12.25365 -12.08868 -11.98012 -11.76711 -11.61786 -11.56439 -11.35002 -11.23355 -10.85521 -10.72278 -9.66986 -8.90488 -7.83077 -5.21971 1.27997 1.45382 1.46659 1.55830 1.74764 2.34745 2.49074 2.58455 3.01656 3.10348 3.32041 3.35151 3.50247 3.53504 3.81754 3.83293 3.85830 3.95133 4.02840 4.09328 4.12298 4.34089 4.45243 4.54350 4.55384 4.59977 4.61385 4.63408 4.67261 4.75916 4.81786 4.86988 4.92873 4.95571 5.05284 5.08195 5.16237 5.32682 5.36840 5.52947 5.55387 5.61418 5.73936 6.18323 6.32136 7.00037 7.07738 7.74045 8.39630 9.24702 Molecular weight = 328.17amu Principal moments of inertia in cm(-1) A = 0.025313 B = 0.003529 C = 0.003464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1105.899405 B = 7931.321187 C = 8080.394351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.338 3.662 3 F -0.195 7.195 4 F -0.188 7.188 5 C -0.232 4.232 6 C 0.551 3.449 7 O -0.570 6.570 8 N -0.581 5.581 9 C 0.109 3.891 10 C -0.124 4.124 11 C -0.117 4.117 12 C 0.151 3.849 13 H 0.048 0.952 14 C 0.147 3.853 15 H 0.076 0.924 16 C -0.132 4.132 17 C 0.186 3.814 18 N -0.616 5.616 19 C -0.237 4.237 20 H 0.082 0.918 21 C -0.064 4.064 22 N -0.950 5.950 23 Si 0.976 3.024 24 H -0.289 1.289 25 H -0.267 1.267 26 H -0.294 1.294 27 C -0.116 4.116 28 C -0.132 4.132 29 H 0.071 0.929 30 H 0.101 0.899 31 H 0.101 0.899 32 H 0.074 0.926 33 H 0.112 0.888 34 H 0.101 0.899 35 H 0.070 0.930 36 H 0.050 0.950 37 H 0.051 0.949 38 H 0.079 0.921 39 H 0.068 0.932 40 H 0.026 0.974 41 H 0.002 0.998 42 H 0.246 0.754 43 H 0.104 0.896 44 H 0.132 0.868 45 H 0.134 0.866 46 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.247 -11.736 -20.001 24.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.249 4.249 2 C 0.301 3.699 3 F -0.176 7.176 4 F -0.169 7.169 5 C -0.237 4.237 6 C 0.338 3.662 7 O -0.449 6.449 8 N -0.311 5.311 9 C -0.012 4.012 10 C -0.163 4.163 11 C -0.157 4.157 12 C 0.044 3.956 13 H 0.067 0.933 14 C 0.042 3.958 15 H 0.094 0.906 16 C -0.171 4.171 17 C 0.060 3.940 18 N -0.341 5.341 19 C -0.366 4.366 20 H 0.100 0.900 21 C -0.257 4.257 22 N -0.599 5.599 23 Si 0.805 3.195 24 H -0.216 1.216 25 H -0.192 1.192 26 H -0.221 1.221 27 C -0.153 4.153 28 C -0.168 4.168 29 H 0.090 0.910 30 H 0.120 0.880 31 H 0.119 0.881 32 H 0.092 0.908 33 H 0.130 0.870 34 H 0.119 0.881 35 H 0.089 0.911 36 H 0.069 0.931 37 H 0.070 0.930 38 H 0.097 0.903 39 H 0.086 0.914 40 H 0.044 0.956 41 H 0.020 0.980 42 H 0.056 0.944 43 H 0.123 0.877 44 H 0.150 0.850 45 H 0.152 0.848 46 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 6.789 -11.860 -19.495 23.807 hybrid contribution -0.286 0.993 1.414 1.751 sum 6.503 -10.867 -18.081 22.075 Atomic orbital electron populations 1.22743 0.90245 1.06393 1.05511 1.19986 0.94155 0.74704 0.81055 1.93030 1.90435 1.37519 1.96587 1.93013 1.90616 1.80903 1.52362 1.22232 1.07698 1.01252 0.92468 1.19536 0.80323 0.80430 0.85865 1.90695 1.36202 1.60084 1.57951 1.47791 1.38746 1.19627 1.24949 1.22307 0.86666 0.98384 0.93870 1.21935 0.97778 1.00393 0.96196 1.21873 0.97982 0.98552 0.97313 1.21555 0.92184 0.90920 0.90950 0.93346 1.21501 0.94821 0.94421 0.85095 0.90622 1.22904 0.99719 0.96321 0.98197 1.20929 0.90087 0.94150 0.88785 1.44966 1.27399 1.46734 1.15021 1.19403 1.03050 1.22869 0.91229 0.90046 1.25623 0.96433 1.01494 1.02159 1.70169 1.10110 1.39761 1.39875 0.85092 0.77996 0.77015 0.79410 1.21625 1.19188 1.22092 1.23210 0.99242 0.87103 1.05768 1.23383 0.88096 0.99169 1.06199 0.90953 0.88035 0.88067 0.90761 0.87004 0.88053 0.91099 0.93122 0.93026 0.90256 0.91359 0.95567 0.98011 0.94448 0.87725 0.84960 0.84820 0.86941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.38 9.08 71.98 0.65 -2.73 16 2 C 0.34 6.30 2.08 30.60 0.06 6.36 16 3 F -0.19 -4.03 13.26 44.97 0.60 -3.43 16 4 F -0.19 -3.19 15.64 44.97 0.70 -2.48 16 5 C -0.23 -4.63 0.82 -52.93 -0.04 -4.67 16 6 C 0.55 15.92 6.00 87.66 0.53 16.45 16 7 O -0.57 -21.06 16.13 -3.03 -0.05 -21.11 16 8 N -0.58 -17.08 2.73 -792.57 -2.16 -19.25 16 9 C 0.11 2.51 4.27 86.48 0.37 2.87 16 10 C -0.12 -2.89 6.11 30.66 0.19 -2.71 16 11 C -0.12 -3.95 5.12 30.51 0.16 -3.79 16 12 C 0.15 6.18 3.53 45.08 0.16 6.33 16 13 H 0.05 2.05 8.14 -2.39 -0.02 2.04 16 14 C 0.15 5.55 3.15 46.00 0.14 5.70 16 15 H 0.08 3.33 6.98 -2.38 -0.02 3.31 16 16 C -0.13 -5.16 6.09 31.60 0.19 -4.97 16 17 C 0.19 9.40 5.29 86.79 0.46 9.86 16 18 N -0.62 -31.69 2.91 -667.10 -1.94 -33.63 16 19 C -0.24 -13.28 10.28 84.04 0.86 -12.42 16 20 H 0.08 4.38 7.83 -2.91 -0.02 4.36 16 21 C -0.06 -3.67 5.46 84.86 0.46 -3.21 16 22 N -0.95 -57.83 10.42 21.65 0.23 -57.60 16 23 Si 0.98 46.18 29.56 68.60 2.03 48.21 16 24 H -0.29 -13.56 7.11 99.48 0.71 -12.86 16 25 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 26 H -0.29 -14.00 7.11 99.48 0.71 -13.29 16 27 C -0.12 -1.81 9.50 30.62 0.29 -1.52 16 28 C -0.13 -1.85 8.29 30.62 0.25 -1.60 16 29 H 0.07 1.57 7.69 -2.39 -0.02 1.55 16 30 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 31 H 0.10 1.60 8.14 -2.39 -0.02 1.58 16 32 H 0.07 1.76 7.05 -2.38 -0.02 1.74 16 33 H 0.11 2.06 4.18 -2.39 -0.01 2.05 16 34 H 0.10 1.81 8.14 -2.39 -0.02 1.79 16 35 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 36 H 0.05 1.84 7.26 -2.39 -0.02 1.82 16 37 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 38 H 0.08 2.79 6.92 -2.39 -0.02 2.78 16 39 H 0.07 2.56 8.14 -2.39 -0.02 2.54 16 40 H 0.03 1.52 6.88 -2.39 -0.02 1.50 16 41 H 0.00 0.09 7.97 -2.39 -0.02 0.08 16 42 H 0.25 14.60 8.31 -92.71 -0.77 13.82 16 43 H 0.10 1.88 8.08 -2.39 -0.02 1.86 16 44 H 0.13 1.51 7.71 -2.39 -0.02 1.49 16 45 H 0.13 1.35 7.85 -2.39 -0.02 1.34 16 46 H 0.11 1.58 8.14 -2.39 -0.02 1.56 16 Total: -1.00 -69.86 356.89 5.12 -64.74 By element: Atomic # 1 Polarization: 13.61 SS G_CDS: 0.98 Total: 14.60 kcal Atomic # 6 Polarization: 5.22 SS G_CDS: 4.74 Total: 9.96 kcal Atomic # 7 Polarization: -106.60 SS G_CDS: -3.88 Total: -110.48 kcal Atomic # 8 Polarization: -21.06 SS G_CDS: -0.05 Total: -21.11 kcal Atomic # 9 Polarization: -7.22 SS G_CDS: 1.30 Total: -5.92 kcal Atomic # 14 Polarization: 46.18 SS G_CDS: 2.03 Total: 48.21 kcal Total: -69.86 5.12 -64.74 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049729429.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.659 kcal (2) G-P(sol) polarization free energy of solvation -69.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.739 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds