Wall clock time and date at job start Tue Mar 31 2020 14:52:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 F 1.39899 * 109.47202 * 2 1 4 4 F 1.39897 * 109.47422 * 239.99915 * 2 1 3 5 5 C 1.53004 * 109.46779 * 119.99787 * 2 1 3 6 6 C 1.50701 * 115.55006 * 293.16001 * 5 2 1 7 7 O 1.21287 * 119.99798 * 109.79515 * 6 5 2 8 8 N 1.34772 * 119.99948 * 289.79520 * 6 5 2 9 9 C 1.47664 * 134.45323 * 171.93687 * 8 6 5 10 10 C 1.53506 * 86.11042 * 204.37763 * 9 8 6 11 11 C 1.48021 * 134.60251 * 352.02694 * 8 6 5 12 12 C 1.52669 * 113.57391 * 222.18329 * 10 9 8 13 13 C 1.53337 * 109.11473 * 286.15246 * 12 10 9 14 14 N 1.46883 * 108.76169 * 307.58928 * 13 12 10 15 15 C 1.36929 * 120.47008 * 235.56757 * 14 13 12 16 16 H 1.08004 * 119.99720 * 149.95270 * 15 14 13 17 17 C 1.38815 * 120.00528 * 329.95335 * 15 14 13 18 18 N 1.31617 * 120.00296 * 153.31104 * 17 15 14 19 19 Si 1.86797 * 119.99743 * 333.31691 * 17 15 14 20 20 H 1.48501 * 109.47466 * 95.43278 * 19 17 15 21 21 H 1.48501 * 109.47311 * 215.43790 * 19 17 15 22 22 H 1.48503 * 109.46957 * 335.43755 * 19 17 15 23 23 C 1.46890 * 119.05804 * 55.54632 * 14 13 12 24 24 C 1.52665 * 113.57365 * 90.94752 * 10 9 8 25 25 C 1.52999 * 117.49667 * 78.83346 * 5 2 1 26 26 C 1.53001 * 117.49746 * 147.48984 * 5 2 1 27 27 H 1.08993 * 109.47405 * 293.30385 * 1 2 3 28 28 H 1.09004 * 109.46889 * 53.30970 * 1 2 3 29 29 H 1.08999 * 109.46834 * 173.29953 * 1 2 3 30 30 H 1.09001 * 113.79330 * 90.05622 * 9 8 6 31 31 H 1.09000 * 113.79540 * 318.69877 * 9 8 6 32 32 H 1.08996 * 113.78970 * 41.34713 * 11 8 6 33 33 H 1.09003 * 113.89728 * 269.89248 * 11 8 6 34 34 H 1.08999 * 109.53333 * 46.04536 * 12 10 9 35 35 H 1.08997 * 109.53126 * 166.26206 * 12 10 9 36 36 H 1.08998 * 109.58779 * 187.80569 * 13 12 10 37 37 H 1.08997 * 109.70628 * 67.44640 * 13 12 10 38 38 H 0.96998 * 119.99691 * 179.97438 * 18 17 15 39 39 H 1.08989 * 109.59084 * 184.66925 * 23 14 13 40 40 H 1.09005 * 109.59010 * 64.22886 * 23 14 13 41 41 H 1.09001 * 109.52825 * 193.73160 * 24 10 9 42 42 H 1.08993 * 109.53519 * 313.94812 * 24 10 9 43 43 H 1.09000 * 117.49648 * 215.00353 * 25 5 2 44 44 H 1.08998 * 117.49942 * 0.02562 * 25 5 2 45 45 H 1.08998 * 117.49879 * 359.97438 * 26 5 2 46 46 H 1.09002 * 117.49714 * 144.96963 * 26 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 9 1.9964 1.3190 0.0000 4 9 1.9964 -0.6595 -1.1422 5 6 2.0399 -0.7212 1.2493 6 6 1.7524 -0.0341 2.5594 7 8 0.9438 -0.5091 3.3286 8 7 2.3937 1.1081 2.8762 9 6 2.2617 2.1016 3.9606 10 6 2.9122 3.0951 2.9879 11 6 3.5113 1.8728 2.2785 12 6 3.9571 3.9954 3.6425 13 6 3.2460 5.0450 4.5050 14 7 2.2315 5.7211 3.6857 15 6 2.2404 7.0841 3.5546 16 1 1.8698 7.5419 2.6494 17 6 2.7257 7.8774 4.5852 18 7 3.2270 9.0654 4.3212 19 14 2.6674 7.2588 6.3468 20 1 3.9708 6.6398 6.6976 21 1 2.3973 8.3964 7.2623 22 1 1.5875 6.2482 6.4810 23 6 1.2077 4.9143 3.0085 24 6 1.9052 3.8638 2.1360 25 6 2.0276 -2.2511 1.2363 26 6 3.3544 -1.4952 1.1311 27 1 -0.3634 0.4065 0.9437 28 1 -0.3633 0.6140 -0.8241 29 1 -0.3633 -1.0207 -0.1199 30 1 2.8717 1.8804 4.8364 31 1 1.2290 2.3442 4.2115 32 1 3.4712 1.9322 1.1909 33 1 4.4936 1.5848 2.6531 34 1 4.6151 3.3937 4.2694 35 1 4.5432 4.4943 2.8708 36 1 3.9713 5.7749 4.8644 37 1 2.7654 4.5588 5.3539 38 1 3.5657 9.6198 5.0414 39 1 0.5903 5.5581 2.3822 40 1 0.5842 4.4166 3.7513 41 1 2.4247 4.3585 1.3153 42 1 1.1639 3.1725 1.7353 43 1 1.8114 -2.7607 2.1753 44 1 1.6566 -2.7438 0.3376 45 1 3.8557 -1.4910 0.1633 46 1 4.0115 -1.5070 2.0008 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001050668337.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:52:43 Heat of formation + Delta-G solvation = -44.488973 kcal Electronic energy + Delta-G solvation = -30307.430784 eV Core-core repulsion = 26063.844869 eV Total energy + Delta-G solvation = -4243.585915 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 328.170 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -49.30328 -47.29767 -40.85975 -39.15858 -36.74059 -36.06650 -32.48752 -31.58843 -30.86981 -30.38749 -27.64704 -26.52550 -24.99169 -23.97232 -22.98080 -22.88391 -22.20691 -20.94615 -19.15988 -18.17086 -18.02834 -17.61908 -16.73318 -16.51266 -16.24251 -15.88708 -15.49744 -15.13578 -14.62026 -14.22207 -14.08526 -13.97994 -13.81536 -13.56552 -13.50997 -13.39282 -13.13229 -12.93717 -12.78733 -12.56308 -12.34938 -12.14524 -12.08254 -11.92291 -11.80977 -11.65231 -11.53310 -10.99459 -10.75830 -10.70225 -10.57782 -10.51049 -10.11462 -10.05957 -9.95927 -9.61467 -9.46821 -8.70162 -8.53743 -6.94054 -5.99828 -3.31347 2.24530 2.57785 3.05409 3.32827 3.35303 3.49113 3.54280 3.76271 3.94249 4.08922 4.16540 4.47582 4.53952 4.55307 4.60825 4.89700 4.98448 5.01837 5.13547 5.16249 5.20674 5.32426 5.34877 5.40308 5.42204 5.45570 5.55681 5.58591 5.63173 5.72905 5.76861 5.88595 5.94033 6.05068 6.18261 6.32057 6.36792 6.46799 6.65463 6.69090 6.71246 6.93848 7.61924 7.97953 7.98486 8.32821 8.95462 9.71859 10.11696 11.16112 Molecular weight = 328.17amu Principal moments of inertia in cm(-1) A = 0.024404 B = 0.003497 C = 0.003336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1147.069623 B = 8005.786575 C = 8390.726733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.334 3.666 3 F -0.184 7.184 4 F -0.195 7.195 5 C -0.213 4.213 6 C 0.576 3.424 7 O -0.535 6.535 8 N -0.628 5.628 9 C 0.116 3.884 10 C -0.074 4.074 11 C 0.097 3.903 12 C -0.120 4.120 13 C 0.135 3.865 14 N -0.602 5.602 15 C -0.264 4.264 16 H 0.082 0.918 17 C 0.031 3.969 18 N -0.899 5.899 19 Si 0.868 3.132 20 H -0.288 1.288 21 H -0.301 1.301 22 H -0.271 1.271 23 C 0.148 3.852 24 C -0.106 4.106 25 C -0.125 4.125 26 C -0.145 4.145 27 H 0.090 0.910 28 H 0.086 0.914 29 H 0.090 0.910 30 H 0.084 0.916 31 H 0.083 0.917 32 H 0.095 0.905 33 H 0.083 0.917 34 H 0.057 0.943 35 H 0.073 0.927 36 H 0.073 0.927 37 H 0.021 0.979 38 H 0.262 0.738 39 H 0.064 0.936 40 H 0.021 0.979 41 H 0.069 0.931 42 H 0.056 0.944 43 H 0.113 0.887 44 H 0.111 0.889 45 H 0.113 0.887 46 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.116 -22.015 -8.315 23.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C 0.298 3.702 3 F -0.164 7.164 4 F -0.176 7.176 5 C -0.217 4.217 6 C 0.363 3.637 7 O -0.413 6.413 8 N -0.361 5.361 9 C -0.005 4.005 10 C -0.075 4.075 11 C -0.025 4.025 12 C -0.160 4.160 13 C 0.009 3.991 14 N -0.325 5.325 15 C -0.392 4.392 16 H 0.100 0.900 17 C -0.169 4.169 18 N -0.541 5.541 19 Si 0.696 3.304 20 H -0.215 1.215 21 H -0.229 1.229 22 H -0.196 1.196 23 C 0.022 3.978 24 C -0.145 4.145 25 C -0.162 4.162 26 C -0.182 4.182 27 H 0.109 0.891 28 H 0.105 0.895 29 H 0.109 0.891 30 H 0.102 0.898 31 H 0.101 0.899 32 H 0.113 0.887 33 H 0.101 0.899 34 H 0.075 0.925 35 H 0.092 0.908 36 H 0.091 0.909 37 H 0.039 0.961 38 H 0.072 0.928 39 H 0.083 0.917 40 H 0.039 0.961 41 H 0.088 0.912 42 H 0.075 0.925 43 H 0.132 0.868 44 H 0.130 0.870 45 H 0.131 0.869 46 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -0.589 -22.242 -7.928 23.620 hybrid contribution 0.217 -0.173 0.995 1.033 sum -0.372 -22.415 -6.933 23.465 Atomic orbital electron populations 1.22719 0.90623 1.05617 1.05760 1.20040 0.93813 0.75289 0.81096 1.93017 1.90216 1.36691 1.96517 1.93002 1.90645 1.81053 1.52876 1.22351 1.07991 0.96989 0.94386 1.18492 0.80924 0.78710 0.85537 1.90717 1.35841 1.63466 1.51253 1.50000 1.34827 1.21860 1.29451 1.23354 1.02288 0.83661 0.91227 1.21955 0.96862 0.93046 0.95638 1.23738 0.89795 0.87994 1.01001 1.21965 0.96512 0.97425 1.00080 1.21218 0.91692 0.93966 0.92250 1.44305 1.28007 1.03234 1.56978 1.18858 1.40497 0.79660 1.00178 0.90026 1.25320 0.98771 0.95114 0.97670 1.69928 1.40019 1.11921 1.32201 0.87057 0.78193 0.77740 0.87361 1.21502 1.22876 1.19575 1.20951 0.90652 0.92166 0.94064 1.21730 0.97104 0.97583 0.98080 1.23065 0.99286 0.88735 1.05095 1.23163 0.89918 1.00224 1.04901 0.89117 0.89525 0.89076 0.89828 0.89866 0.88691 0.89851 0.92461 0.90837 0.90926 0.96065 0.92778 0.91709 0.96144 0.91198 0.92494 0.86849 0.87050 0.86873 0.87517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.73 9.35 37.16 0.35 -1.39 16 2 C 0.33 3.52 2.07 -26.73 -0.06 3.47 16 3 F -0.18 -2.25 13.68 2.25 0.03 -2.22 16 4 F -0.19 -2.02 15.66 2.25 0.04 -1.98 16 5 C -0.21 -2.26 1.45 -155.66 -0.23 -2.49 16 6 C 0.58 7.91 6.47 -10.99 -0.07 7.84 16 7 O -0.54 -9.04 17.56 5.55 0.10 -8.94 16 8 N -0.63 -8.36 3.29 -179.03 -0.59 -8.95 16 9 C 0.12 1.64 7.62 -3.15 -0.02 1.62 16 10 C -0.07 -1.06 0.77 -154.41 -0.12 -1.18 16 11 C 0.10 1.16 7.28 -2.96 -0.02 1.14 16 12 C -0.12 -1.90 5.26 -26.73 -0.14 -2.04 16 13 C 0.13 2.75 4.19 -3.66 -0.02 2.74 16 14 N -0.60 -13.69 2.67 -172.21 -0.46 -14.15 16 15 C -0.26 -7.17 9.92 -15.06 -0.15 -7.32 16 16 H 0.08 2.38 8.06 -52.48 -0.42 1.96 16 17 C 0.03 0.88 5.06 -17.43 -0.09 0.79 16 18 N -0.90 -27.00 13.97 55.49 0.78 -26.23 16 19 Si 0.87 21.73 24.74 -169.99 -4.20 17.52 16 20 H -0.29 -6.93 6.79 56.52 0.38 -6.54 16 21 H -0.30 -7.71 7.11 56.52 0.40 -7.31 16 22 H -0.27 -6.74 7.08 56.52 0.40 -6.34 16 23 C 0.15 2.81 6.38 -3.65 -0.02 2.79 16 24 C -0.11 -1.67 5.21 -26.73 -0.14 -1.81 16 25 C -0.12 -1.05 9.54 -26.70 -0.25 -1.30 16 26 C -0.14 -1.21 9.66 -26.69 -0.26 -1.47 16 27 H 0.09 0.95 7.57 -51.93 -0.39 0.56 16 28 H 0.09 0.70 8.14 -51.93 -0.42 0.27 16 29 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.08 1.10 8.07 -51.93 -0.42 0.68 16 31 H 0.08 1.27 7.41 -51.93 -0.38 0.89 16 32 H 0.09 1.13 5.55 -51.93 -0.29 0.85 16 33 H 0.08 0.86 8.09 -51.93 -0.42 0.44 16 34 H 0.06 0.77 8.12 -51.93 -0.42 0.35 16 35 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 36 H 0.07 1.65 5.14 -51.93 -0.27 1.39 16 37 H 0.02 0.43 7.46 -51.93 -0.39 0.04 16 38 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 39 H 0.06 1.25 7.92 -51.94 -0.41 0.84 16 40 H 0.02 0.39 7.49 -51.93 -0.39 0.00 16 41 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 42 H 0.06 0.84 8.01 -51.93 -0.42 0.43 16 43 H 0.11 1.00 8.08 -51.93 -0.42 0.58 16 44 H 0.11 0.75 7.98 -51.93 -0.41 0.34 16 45 H 0.11 0.85 7.59 -51.93 -0.39 0.45 16 46 H 0.11 0.86 8.14 -51.93 -0.42 0.43 16 LS Contribution 364.34 15.07 5.49 5.49 Total: -1.00 -31.67 364.34 -7.18 -38.85 By element: Atomic # 1 Polarization: 6.34 SS G_CDS: -7.12 Total: -0.78 kcal Atomic # 6 Polarization: 2.62 SS G_CDS: -1.24 Total: 1.39 kcal Atomic # 7 Polarization: -49.05 SS G_CDS: -0.27 Total: -49.33 kcal Atomic # 8 Polarization: -9.04 SS G_CDS: 0.10 Total: -8.94 kcal Atomic # 9 Polarization: -4.26 SS G_CDS: 0.07 Total: -4.20 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -4.20 Total: 17.52 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -31.67 -7.18 -38.85 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050668337.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.639 kcal (2) G-P(sol) polarization free energy of solvation -31.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.850 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds