Wall clock time and date at job start Tue Mar 31 2020 14:52:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 F 1.39899 * 109.47202 * 2 1 4 4 F 1.39897 * 109.47422 * 239.99915 * 2 1 3 5 5 C 1.53004 * 109.46779 * 119.99787 * 2 1 3 6 6 C 1.50701 * 115.55006 * 293.16001 * 5 2 1 7 7 O 1.21287 * 119.99798 * 109.79515 * 6 5 2 8 8 N 1.34772 * 119.99948 * 289.79520 * 6 5 2 9 9 C 1.47664 * 134.45323 * 171.93687 * 8 6 5 10 10 C 1.53506 * 86.11042 * 204.37763 * 9 8 6 11 11 C 1.48021 * 134.60251 * 352.02694 * 8 6 5 12 12 C 1.52669 * 113.57391 * 222.18329 * 10 9 8 13 13 C 1.53337 * 109.11473 * 286.15246 * 12 10 9 14 14 N 1.46883 * 108.76169 * 307.58928 * 13 12 10 15 15 C 1.36929 * 120.47008 * 235.56757 * 14 13 12 16 16 H 1.08004 * 119.99720 * 149.95270 * 15 14 13 17 17 C 1.38815 * 120.00528 * 329.95335 * 15 14 13 18 18 N 1.31617 * 120.00296 * 153.31104 * 17 15 14 19 19 Si 1.86797 * 119.99743 * 333.31691 * 17 15 14 20 20 H 1.48501 * 109.47466 * 95.43278 * 19 17 15 21 21 H 1.48501 * 109.47311 * 215.43790 * 19 17 15 22 22 H 1.48503 * 109.46957 * 335.43755 * 19 17 15 23 23 C 1.46890 * 119.05804 * 55.54632 * 14 13 12 24 24 C 1.52665 * 113.57365 * 90.94752 * 10 9 8 25 25 C 1.52999 * 117.49667 * 78.83346 * 5 2 1 26 26 C 1.53001 * 117.49746 * 147.48984 * 5 2 1 27 27 H 1.08993 * 109.47405 * 293.30385 * 1 2 3 28 28 H 1.09004 * 109.46889 * 53.30970 * 1 2 3 29 29 H 1.08999 * 109.46834 * 173.29953 * 1 2 3 30 30 H 1.09001 * 113.79330 * 90.05622 * 9 8 6 31 31 H 1.09000 * 113.79540 * 318.69877 * 9 8 6 32 32 H 1.08996 * 113.78970 * 41.34713 * 11 8 6 33 33 H 1.09003 * 113.89728 * 269.89248 * 11 8 6 34 34 H 1.08999 * 109.53333 * 46.04536 * 12 10 9 35 35 H 1.08997 * 109.53126 * 166.26206 * 12 10 9 36 36 H 1.08998 * 109.58779 * 187.80569 * 13 12 10 37 37 H 1.08997 * 109.70628 * 67.44640 * 13 12 10 38 38 H 0.96998 * 119.99691 * 179.97438 * 18 17 15 39 39 H 1.08989 * 109.59084 * 184.66925 * 23 14 13 40 40 H 1.09005 * 109.59010 * 64.22886 * 23 14 13 41 41 H 1.09001 * 109.52825 * 193.73160 * 24 10 9 42 42 H 1.08993 * 109.53519 * 313.94812 * 24 10 9 43 43 H 1.09000 * 117.49648 * 215.00353 * 25 5 2 44 44 H 1.08998 * 117.49942 * 0.02562 * 25 5 2 45 45 H 1.08998 * 117.49879 * 359.97438 * 26 5 2 46 46 H 1.09002 * 117.49714 * 144.96963 * 26 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 9 1.9964 1.3190 0.0000 4 9 1.9964 -0.6595 -1.1422 5 6 2.0399 -0.7212 1.2493 6 6 1.7524 -0.0341 2.5594 7 8 0.9438 -0.5091 3.3286 8 7 2.3937 1.1081 2.8762 9 6 2.2617 2.1016 3.9606 10 6 2.9122 3.0951 2.9879 11 6 3.5113 1.8728 2.2785 12 6 3.9571 3.9954 3.6425 13 6 3.2460 5.0450 4.5050 14 7 2.2315 5.7211 3.6857 15 6 2.2404 7.0841 3.5546 16 1 1.8698 7.5419 2.6494 17 6 2.7257 7.8774 4.5852 18 7 3.2270 9.0654 4.3212 19 14 2.6674 7.2588 6.3468 20 1 3.9708 6.6398 6.6976 21 1 2.3973 8.3964 7.2623 22 1 1.5875 6.2482 6.4810 23 6 1.2077 4.9143 3.0085 24 6 1.9052 3.8638 2.1360 25 6 2.0276 -2.2511 1.2363 26 6 3.3544 -1.4952 1.1311 27 1 -0.3634 0.4065 0.9437 28 1 -0.3633 0.6140 -0.8241 29 1 -0.3633 -1.0207 -0.1199 30 1 2.8717 1.8804 4.8364 31 1 1.2290 2.3442 4.2115 32 1 3.4712 1.9322 1.1909 33 1 4.4936 1.5848 2.6531 34 1 4.6151 3.3937 4.2694 35 1 4.5432 4.4943 2.8708 36 1 3.9713 5.7749 4.8644 37 1 2.7654 4.5588 5.3539 38 1 3.5657 9.6198 5.0414 39 1 0.5903 5.5581 2.3822 40 1 0.5842 4.4166 3.7513 41 1 2.4247 4.3585 1.3153 42 1 1.1639 3.1725 1.7353 43 1 1.8114 -2.7607 2.1753 44 1 1.6566 -2.7438 0.3376 45 1 3.8557 -1.4910 0.1633 46 1 4.0115 -1.5070 2.0008 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001050668337.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:52:43 Heat of formation + Delta-G solvation = -63.266373 kcal Electronic energy + Delta-G solvation = -30308.245033 eV Core-core repulsion = 26063.844869 eV Total energy + Delta-G solvation = -4244.400164 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 328.170 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -50.11900 -48.12448 -41.96060 -40.21502 -37.85826 -37.40037 -34.33650 -32.46856 -32.26482 -31.92797 -28.97702 -27.61506 -26.04495 -25.46509 -24.35232 -23.65857 -23.19226 -22.46839 -20.16740 -19.52594 -19.03092 -18.43426 -18.31816 -17.52259 -17.27175 -17.02632 -16.83715 -16.46407 -15.89020 -15.46022 -15.28848 -15.17458 -14.95463 -14.89926 -14.59500 -14.43319 -14.30742 -14.19432 -13.84357 -13.60987 -13.53241 -13.37097 -13.28751 -13.19433 -12.92492 -12.69592 -12.55290 -12.49020 -12.28290 -12.15210 -11.74044 -11.65507 -11.53168 -11.46664 -11.32896 -11.27349 -10.83752 -10.57246 -9.76088 -8.84988 -8.17687 -5.44679 1.26751 1.32093 1.43809 1.53345 1.61696 2.34022 2.44352 2.56990 2.98107 3.04325 3.10528 3.27625 3.33945 3.43592 3.48030 3.78526 3.84253 3.87939 3.93954 4.10330 4.31059 4.38540 4.45343 4.51932 4.53738 4.56210 4.57524 4.61528 4.63626 4.71793 4.79060 4.81210 4.84833 4.88728 4.90012 5.00666 5.03167 5.03643 5.17844 5.26810 5.32259 5.50938 5.92292 6.15891 6.59888 6.94618 6.97381 7.66828 8.08558 9.02561 Molecular weight = 328.17amu Principal moments of inertia in cm(-1) A = 0.024404 B = 0.003497 C = 0.003336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1147.069623 B = 8005.786575 C = 8390.726733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.333 3.667 3 F -0.196 7.196 4 F -0.192 7.192 5 C -0.229 4.229 6 C 0.575 3.425 7 O -0.574 6.574 8 N -0.628 5.628 9 C 0.113 3.887 10 C -0.076 4.076 11 C 0.112 3.888 12 C -0.108 4.108 13 C 0.128 3.872 14 N -0.615 5.615 15 C -0.253 4.253 16 H 0.047 0.953 17 C -0.023 4.023 18 N -0.948 5.948 19 Si 0.931 3.069 20 H -0.270 1.270 21 H -0.310 1.310 22 H -0.267 1.267 23 C 0.145 3.855 24 C -0.092 4.092 25 C -0.115 4.115 26 C -0.131 4.131 27 H 0.073 0.927 28 H 0.094 0.906 29 H 0.108 0.892 30 H 0.100 0.900 31 H 0.067 0.933 32 H 0.099 0.901 33 H 0.112 0.888 34 H 0.092 0.908 35 H 0.066 0.934 36 H 0.048 0.952 37 H 0.030 0.970 38 H 0.262 0.738 39 H 0.052 0.948 40 H 0.027 0.973 41 H 0.061 0.939 42 H 0.067 0.933 43 H 0.108 0.892 44 H 0.130 0.870 45 H 0.126 0.874 46 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.884 -25.233 -8.473 26.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C 0.297 3.703 3 F -0.177 7.177 4 F -0.173 7.173 5 C -0.233 4.233 6 C 0.364 3.636 7 O -0.454 6.454 8 N -0.361 5.361 9 C -0.009 4.009 10 C -0.077 4.077 11 C -0.010 4.010 12 C -0.148 4.148 13 C 0.003 3.997 14 N -0.339 5.339 15 C -0.382 4.382 16 H 0.065 0.935 17 C -0.218 4.218 18 N -0.593 5.593 19 Si 0.759 3.241 20 H -0.196 1.196 21 H -0.239 1.239 22 H -0.192 1.192 23 C 0.020 3.980 24 C -0.131 4.131 25 C -0.152 4.152 26 C -0.168 4.168 27 H 0.092 0.908 28 H 0.113 0.887 29 H 0.126 0.874 30 H 0.118 0.882 31 H 0.086 0.914 32 H 0.117 0.883 33 H 0.130 0.870 34 H 0.110 0.890 35 H 0.084 0.916 36 H 0.066 0.934 37 H 0.048 0.952 38 H 0.071 0.929 39 H 0.070 0.930 40 H 0.045 0.955 41 H 0.080 0.920 42 H 0.086 0.914 43 H 0.126 0.874 44 H 0.148 0.852 45 H 0.144 0.856 46 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 0.424 -25.506 -8.102 26.765 hybrid contribution -0.153 0.820 0.960 1.272 sum 0.270 -24.686 -7.141 25.700 Atomic orbital electron populations 1.22734 0.89916 1.06847 1.05156 1.20129 0.94338 0.74700 0.81150 1.92987 1.90416 1.37702 1.96586 1.93005 1.90671 1.80919 1.52681 1.22250 1.10487 0.97955 0.92642 1.18935 0.80034 0.78441 0.86182 1.90695 1.37362 1.64551 1.52758 1.50040 1.35134 1.21741 1.29197 1.23357 1.01663 0.83901 0.91954 1.21847 0.96397 0.93405 0.96025 1.23738 0.90413 0.85705 1.01097 1.21822 0.96710 0.96606 0.99625 1.21300 0.90921 0.94442 0.93069 1.44423 1.29854 1.01988 1.57670 1.18792 1.38701 0.81988 0.98750 0.93531 1.25859 0.99369 0.95422 1.01193 1.70037 1.42441 1.13680 1.33129 0.86031 0.78913 0.76834 0.82313 1.19587 1.23881 1.19176 1.21055 0.90291 0.92418 0.94271 1.21522 0.97482 0.96746 0.97333 1.23182 0.99182 0.87145 1.05735 1.23291 0.89396 0.98326 1.05813 0.90790 0.88669 0.87358 0.88245 0.91446 0.88326 0.87014 0.88962 0.91554 0.93389 0.95245 0.92923 0.92950 0.95500 0.91987 0.91443 0.87360 0.85182 0.85604 0.86961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.13 9.35 71.98 0.67 -2.45 16 2 C 0.33 6.25 2.07 30.60 0.06 6.31 16 3 F -0.20 -4.38 13.68 44.97 0.61 -3.77 16 4 F -0.19 -3.41 15.66 44.97 0.70 -2.71 16 5 C -0.23 -4.27 1.45 -52.93 -0.08 -4.35 16 6 C 0.57 14.64 6.47 87.66 0.57 15.21 16 7 O -0.57 -18.72 17.56 -3.05 -0.05 -18.77 16 8 N -0.63 -15.10 3.29 -838.73 -2.76 -17.86 16 9 C 0.11 2.91 7.62 86.32 0.66 3.57 16 10 C -0.08 -1.98 0.77 -52.04 -0.04 -2.02 16 11 C 0.11 2.29 7.28 86.25 0.63 2.91 16 12 C -0.11 -3.13 5.26 30.60 0.16 -2.97 16 13 C 0.13 5.02 4.19 86.42 0.36 5.39 16 14 N -0.61 -27.98 2.67 -698.74 -1.86 -29.84 16 15 C -0.25 -14.12 9.92 84.04 0.83 -13.29 16 16 H 0.05 2.87 8.06 -2.91 -0.02 2.85 16 17 C -0.02 -1.30 5.06 84.86 0.43 -0.87 16 18 N -0.95 -58.73 13.97 21.65 0.30 -58.43 16 19 Si 0.93 45.47 24.74 68.60 1.70 47.17 16 20 H -0.27 -12.27 6.79 99.48 0.68 -11.59 16 21 H -0.31 -15.52 7.11 99.48 0.71 -14.81 16 22 H -0.27 -12.71 7.08 99.48 0.70 -12.01 16 23 C 0.14 5.49 6.38 86.42 0.55 6.04 16 24 C -0.09 -2.79 5.21 30.60 0.16 -2.63 16 25 C -0.12 -1.60 9.54 30.62 0.29 -1.31 16 26 C -0.13 -1.75 9.66 30.62 0.30 -1.45 16 27 H 0.07 1.49 7.57 -2.39 -0.02 1.47 16 28 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 29 H 0.11 1.37 8.14 -2.39 -0.02 1.35 16 30 H 0.10 2.27 8.07 -2.39 -0.02 2.25 16 31 H 0.07 1.96 7.41 -2.39 -0.02 1.94 16 32 H 0.10 2.02 5.55 -2.39 -0.01 2.01 16 33 H 0.11 1.74 8.09 -2.39 -0.02 1.72 16 34 H 0.09 2.07 8.12 -2.39 -0.02 2.05 16 35 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 36 H 0.05 2.13 5.14 -2.39 -0.01 2.11 16 37 H 0.03 1.12 7.46 -2.39 -0.02 1.10 16 38 H 0.26 15.40 8.31 -92.71 -0.77 14.63 16 39 H 0.05 2.07 7.92 -2.39 -0.02 2.05 16 40 H 0.03 1.00 7.49 -2.38 -0.02 0.98 16 41 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 42 H 0.07 1.92 8.01 -2.39 -0.02 1.90 16 43 H 0.11 1.65 8.08 -2.39 -0.02 1.64 16 44 H 0.13 1.30 7.98 -2.39 -0.02 1.28 16 45 H 0.13 1.38 7.59 -2.39 -0.02 1.37 16 46 H 0.11 1.39 8.14 -2.39 -0.02 1.37 16 Total: -1.00 -70.25 364.34 5.14 -65.11 By element: Atomic # 1 Polarization: 10.06 SS G_CDS: 0.95 Total: 11.01 kcal Atomic # 6 Polarization: 2.54 SS G_CDS: 5.56 Total: 8.10 kcal Atomic # 7 Polarization: -101.81 SS G_CDS: -4.32 Total: -106.13 kcal Atomic # 8 Polarization: -18.72 SS G_CDS: -0.05 Total: -18.77 kcal Atomic # 9 Polarization: -7.80 SS G_CDS: 1.32 Total: -6.48 kcal Atomic # 14 Polarization: 45.47 SS G_CDS: 1.70 Total: 47.17 kcal Total: -70.25 5.14 -65.11 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050668337.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.844 kcal (2) G-P(sol) polarization free energy of solvation -70.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.110 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds