Wall clock time and date at job start Tue Mar 31 2020 16:05:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86798 * 120.00188 * 2 1 4 4 H 1.48504 * 109.46934 * 269.99888 * 3 2 1 5 5 H 1.48492 * 109.47318 * 30.00064 * 3 2 1 6 6 H 1.48498 * 109.47013 * 150.00339 * 3 2 1 7 7 C 1.38815 * 119.99708 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99886 * 164.26702 * 7 2 1 9 9 N 1.36938 * 119.99979 * 344.26815 * 7 2 1 10 10 C 1.47228 * 121.32736 * 155.41909 * 9 7 2 11 11 C 1.52792 * 107.91010 * 115.78978 * 10 9 7 12 12 C 1.50591 * 110.90940 * 47.34838 * 11 10 9 13 13 C 1.38980 * 117.63033 * 160.06389 * 12 11 10 14 14 C 1.50692 * 119.71106 * 359.28691 * 13 12 11 15 15 N 1.46504 * 109.47395 * 79.72934 * 14 13 12 16 16 C 1.34774 * 119.99898 * 180.27706 * 15 14 13 17 17 O 1.21284 * 120.00414 * 359.72156 * 16 15 14 18 18 C 1.50706 * 119.99664 * 179.72078 * 16 15 14 19 19 C 1.54266 * 110.03245 * 297.90801 * 18 16 15 20 20 C 1.54966 * 104.15969 * 217.13678 * 19 18 16 21 21 C 1.54892 * 102.77586 * 37.88656 * 20 19 18 22 22 C 1.53876 * 110.02999 * 180.69060 * 18 16 15 23 23 C 1.37917 * 120.58093 * 179.00935 * 13 12 11 24 24 C 1.38268 * 119.82538 * 0.33654 * 23 13 12 25 25 C 1.37957 * 119.71575 * 0.25733 * 24 23 13 26 26 C 1.37676 * 122.85509 * 340.08199 * 12 11 10 27 27 C 1.46678 * 121.33027 * 335.39645 * 9 7 2 28 28 H 0.96998 * 119.99698 * 359.97438 * 1 2 3 29 29 H 1.08994 * 109.77697 * 235.39759 * 10 9 7 30 30 H 1.09008 * 109.77246 * 356.19004 * 10 9 7 31 31 H 1.08996 * 109.20293 * 167.89052 * 11 10 9 32 32 H 1.09001 * 109.19952 * 287.22898 * 11 10 9 33 33 H 1.08998 * 109.47409 * 319.72392 * 14 13 12 34 34 H 1.09008 * 109.47105 * 199.72809 * 14 13 12 35 35 H 0.96999 * 119.99665 * 359.97438 * 15 14 13 36 36 H 1.08996 * 110.01130 * 59.29997 * 18 16 15 37 37 H 1.09002 * 110.48814 * 335.78584 * 19 18 16 38 38 H 1.09000 * 110.48606 * 98.42518 * 19 18 16 39 39 H 1.08998 * 110.71816 * 279.57582 * 20 19 18 40 40 H 1.08998 * 110.92462 * 156.29896 * 20 19 18 41 41 H 1.08999 * 110.48457 * 203.40707 * 21 20 19 42 42 H 1.08995 * 110.59631 * 80.82087 * 21 20 19 43 43 H 1.09003 * 110.03158 * 238.57000 * 22 18 16 44 44 H 1.08994 * 110.03413 * 359.95261 * 22 18 16 45 45 H 1.07997 * 120.08502 * 180.35004 * 23 13 12 46 46 H 1.07999 * 120.14009 * 180.27998 * 24 23 13 47 47 H 1.07999 * 119.74550 * 179.84261 * 25 24 23 48 48 H 1.08992 * 109.43236 * 104.34018 * 27 9 7 49 49 H 1.08999 * 109.43416 * 344.47294 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4478 2.6526 0.7000 6 1 3.5478 1.4400 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0599 -1.2196 -0.2542 9 7 1.3639 -2.3660 0.3205 10 6 1.8517 -3.6698 -0.1590 11 6 2.2726 -4.4908 1.0590 12 6 1.2159 -4.4428 2.1308 13 6 1.2320 -5.4416 3.0970 14 6 2.2752 -6.5270 3.0318 15 7 3.5396 -6.0223 3.5731 16 6 4.6236 -6.8223 3.6109 17 8 4.5511 -7.9616 3.2015 18 6 5.9258 -6.3010 4.1620 19 6 6.4262 -5.1188 3.3065 20 6 7.9650 -5.2992 3.2735 21 6 8.1276 -6.8366 3.1776 22 6 7.0072 -7.3927 4.0805 23 6 0.3050 -5.4450 4.1182 24 6 -0.6542 -4.4510 4.1796 25 6 -0.6800 -3.4651 3.2149 26 6 0.2516 -3.4616 2.1856 27 6 0.1585 -2.3635 1.1561 28 1 -0.4849 0.8400 0.0004 29 1 1.0559 -4.1868 -0.6951 30 1 2.7071 -3.5236 -0.8186 31 1 2.4322 -5.5256 0.7560 32 1 3.2025 -4.0871 1.4595 33 1 2.4194 -6.8308 1.9950 34 1 1.9451 -7.3841 3.6189 35 1 3.5977 -5.1110 3.9002 36 1 5.7928 -5.9836 5.1962 37 1 6.0139 -5.1756 2.2990 38 1 6.1624 -4.1705 3.7747 39 1 8.4174 -4.9194 4.1895 40 1 8.3957 -4.8099 2.4000 41 1 9.1052 -7.1408 3.5516 42 1 7.9917 -7.1731 2.1499 43 1 7.3997 -7.6044 5.0751 44 1 6.5899 -8.2997 3.6432 45 1 0.3283 -6.2220 4.8680 46 1 -1.3797 -4.4462 4.9796 47 1 -1.4305 -2.6899 3.2610 48 1 -0.7178 -2.5276 0.5290 49 1 0.0682 -1.4010 1.6596 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001051275455.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:05:04 Heat of formation + Delta-G solvation = -10.291309 kcal Electronic energy + Delta-G solvation = -28422.196452 eV Core-core repulsion = 24734.322989 eV Total energy + Delta-G solvation = -3687.873463 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 328.189 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -40.32342 -39.44621 -37.20866 -35.99433 -34.93358 -32.77175 -31.78491 -30.15855 -29.66260 -28.84018 -28.55845 -25.76263 -25.57277 -23.19043 -22.17171 -21.96158 -20.86536 -20.50301 -19.52925 -19.01471 -17.49332 -16.81382 -16.29168 -15.76979 -15.70262 -15.32282 -14.94139 -14.80536 -14.39242 -14.26589 -13.75163 -13.62428 -13.48307 -13.18992 -12.95597 -12.67076 -12.57541 -12.36261 -11.97339 -11.83069 -11.54967 -11.51119 -11.28120 -11.27220 -11.25641 -10.97612 -10.92894 -10.87838 -10.74194 -10.67220 -10.40874 -10.17382 -9.93224 -9.80649 -9.75031 -9.02198 -8.71428 -8.28361 -7.90546 -6.81690 -5.87354 -3.26880 1.59899 1.85208 2.64528 3.29682 3.33183 3.40383 3.42070 4.19146 4.31222 4.42835 4.43523 4.61052 4.85756 5.06020 5.12817 5.18156 5.24348 5.27791 5.29541 5.33172 5.39568 5.44670 5.49616 5.50550 5.52583 5.69622 5.73809 5.77637 5.81665 5.92792 5.97010 5.99166 6.09128 6.12107 6.14309 6.18252 6.20208 6.43874 6.46794 6.52899 6.63214 6.81148 6.83112 6.92771 7.08549 7.18272 7.42577 7.51989 7.58809 7.71595 8.22574 8.30955 9.11765 9.74229 10.32293 11.23178 Molecular weight = 328.19amu Principal moments of inertia in cm(-1) A = 0.010726 B = 0.003813 C = 0.003040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2609.879388 B = 7341.511218 C = 9207.019878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.001 3.999 3 Si 0.904 3.096 4 H -0.286 1.286 5 H -0.289 1.289 6 H -0.280 1.280 7 C -0.249 4.249 8 H 0.069 0.931 9 N -0.593 5.593 10 C 0.142 3.858 11 C -0.098 4.098 12 C -0.046 4.046 13 C -0.124 4.124 14 C 0.165 3.835 15 N -0.719 5.719 16 C 0.518 3.482 17 O -0.546 6.546 18 C -0.113 4.113 19 C -0.117 4.117 20 C -0.123 4.123 21 C -0.124 4.124 22 C -0.118 4.118 23 C -0.119 4.119 24 C -0.132 4.132 25 C -0.114 4.114 26 C -0.077 4.077 27 C 0.205 3.795 28 H 0.255 0.745 29 H 0.026 0.974 30 H 0.060 0.940 31 H 0.062 0.938 32 H 0.069 0.931 33 H 0.076 0.924 34 H 0.068 0.932 35 H 0.403 0.597 36 H 0.096 0.904 37 H 0.073 0.927 38 H 0.075 0.925 39 H 0.068 0.932 40 H 0.069 0.931 41 H 0.065 0.935 42 H 0.066 0.934 43 H 0.065 0.935 44 H 0.089 0.911 45 H 0.113 0.887 46 H 0.115 0.885 47 H 0.119 0.881 48 H 0.041 0.959 49 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.396 -11.304 10.102 17.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.197 4.197 3 Si 0.734 3.266 4 H -0.213 1.213 5 H -0.215 1.215 6 H -0.205 1.205 7 C -0.378 4.378 8 H 0.087 0.913 9 N -0.315 5.315 10 C 0.015 3.985 11 C -0.137 4.137 12 C -0.047 4.047 13 C -0.124 4.124 14 C 0.042 3.958 15 N -0.370 5.370 16 C 0.304 3.696 17 O -0.423 6.423 18 C -0.135 4.135 19 C -0.155 4.155 20 C -0.161 4.161 21 C -0.162 4.162 22 C -0.156 4.156 23 C -0.137 4.137 24 C -0.150 4.150 25 C -0.132 4.132 26 C -0.078 4.078 27 C 0.080 3.920 28 H 0.065 0.935 29 H 0.044 0.956 30 H 0.079 0.921 31 H 0.080 0.920 32 H 0.088 0.912 33 H 0.095 0.905 34 H 0.087 0.913 35 H 0.238 0.762 36 H 0.114 0.886 37 H 0.092 0.908 38 H 0.093 0.907 39 H 0.086 0.914 40 H 0.088 0.912 41 H 0.083 0.917 42 H 0.085 0.915 43 H 0.083 0.917 44 H 0.107 0.893 45 H 0.131 0.869 46 H 0.133 0.867 47 H 0.137 0.863 48 H 0.058 0.942 49 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 8.235 -11.963 9.776 17.507 hybrid contribution 0.167 1.394 0.315 1.439 sum 8.402 -10.569 10.091 16.856 Atomic orbital electron populations 1.70001 1.05210 1.25653 1.54402 1.25002 0.95374 0.98351 1.00943 0.86269 0.79086 0.83513 0.77765 1.21337 1.21514 1.20502 1.19156 0.92320 0.84256 1.42069 0.91313 1.43988 1.30226 1.01343 1.55914 1.20912 0.97510 0.87253 0.92820 1.21029 0.96615 0.99803 0.96258 1.19444 0.96373 0.93310 0.95598 1.19806 0.98157 0.97400 0.97087 1.20154 0.81486 0.94379 0.99750 1.46108 1.10248 1.16642 1.63981 1.20605 0.85202 0.85540 0.78209 1.90652 1.84673 1.18829 1.48185 1.21956 0.92944 0.97600 1.00986 1.22388 0.96136 0.96697 1.00231 1.22503 0.95404 0.96214 1.01976 1.22361 0.98267 0.95342 1.00200 1.22155 0.94354 0.98834 1.00268 1.20758 0.96067 0.99069 0.97823 1.20934 0.99149 0.95552 0.99332 1.21194 0.98928 0.98579 0.94534 1.21037 0.93066 0.96995 0.96728 1.19764 0.89119 0.94291 0.88874 0.93501 0.95589 0.92133 0.91979 0.91239 0.90547 0.91346 0.76240 0.88580 0.90814 0.90677 0.91363 0.91218 0.91670 0.91502 0.91658 0.89257 0.86897 0.86680 0.86263 0.94171 0.88539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -25.45 11.10 55.49 0.62 -24.84 16 2 C 0.00 0.04 4.99 -17.43 -0.09 -0.05 16 3 Si 0.90 21.11 29.58 -169.99 -5.03 16.08 16 4 H -0.29 -6.71 7.11 56.52 0.40 -6.30 16 5 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 6 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 7 C -0.25 -6.60 9.69 -15.06 -0.15 -6.75 16 8 H 0.07 1.78 7.88 -52.48 -0.41 1.37 16 9 N -0.59 -14.41 2.97 -173.94 -0.52 -14.93 16 10 C 0.14 2.89 6.52 -3.75 -0.02 2.86 16 11 C -0.10 -1.69 5.24 -28.04 -0.15 -1.84 16 12 C -0.05 -0.81 5.76 -104.61 -0.60 -1.42 16 13 C -0.12 -1.84 5.26 -104.47 -0.55 -2.39 16 14 C 0.16 2.22 5.10 -5.20 -0.03 2.19 16 15 N -0.72 -8.82 5.46 -61.47 -0.34 -9.16 16 16 C 0.52 6.68 7.00 -10.98 -0.08 6.60 16 17 O -0.55 -8.87 15.21 5.55 0.08 -8.79 16 18 C -0.11 -1.13 3.29 -90.65 -0.30 -1.43 16 19 C -0.12 -1.11 6.30 -25.03 -0.16 -1.27 16 20 C -0.12 -1.04 6.91 -24.70 -0.17 -1.21 16 21 C -0.12 -1.09 6.83 -25.07 -0.17 -1.26 16 22 C -0.12 -1.16 6.40 -25.61 -0.16 -1.33 16 23 C -0.12 -1.64 9.65 -39.69 -0.38 -2.02 16 24 C -0.13 -1.89 10.05 -39.67 -0.40 -2.29 16 25 C -0.11 -1.91 9.62 -39.46 -0.38 -2.29 16 26 C -0.08 -1.48 5.82 -104.55 -0.61 -2.09 16 27 C 0.21 4.77 4.85 -5.04 -0.02 4.75 16 28 H 0.25 6.93 8.31 -40.82 -0.34 6.59 16 29 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.06 1.20 7.96 -51.92 -0.41 0.78 16 31 H 0.06 0.97 6.25 -51.93 -0.32 0.64 16 32 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 33 H 0.08 1.10 6.34 -51.93 -0.33 0.77 16 34 H 0.07 0.89 7.99 -51.92 -0.41 0.48 16 35 H 0.40 4.59 8.45 -40.82 -0.34 4.25 16 36 H 0.10 0.81 8.14 -51.93 -0.42 0.38 16 37 H 0.07 0.81 7.85 -51.93 -0.41 0.40 16 38 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 42 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 43 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 44 H 0.09 1.07 6.39 -51.93 -0.33 0.74 16 45 H 0.11 1.31 8.02 -52.49 -0.42 0.89 16 46 H 0.12 1.35 8.06 -52.49 -0.42 0.93 16 47 H 0.12 1.90 8.05 -52.49 -0.42 1.48 16 48 H 0.04 1.01 8.14 -51.93 -0.42 0.59 16 49 H 0.10 2.48 6.34 -51.93 -0.33 2.16 16 LS Contribution 384.24 15.07 5.79 5.79 Total: -1.00 -29.84 384.24 -11.75 -41.59 By element: Atomic # 1 Polarization: 13.44 SS G_CDS: -7.94 Total: 5.50 kcal Atomic # 6 Polarization: -6.83 SS G_CDS: -4.42 Total: -11.25 kcal Atomic # 7 Polarization: -48.69 SS G_CDS: -0.24 Total: -48.93 kcal Atomic # 8 Polarization: -8.87 SS G_CDS: 0.08 Total: -8.79 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.03 Total: 16.08 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -29.84 -11.75 -41.59 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001051275455.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.295 kcal (2) G-P(sol) polarization free energy of solvation -29.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.586 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds