Wall clock time and date at job start Tue Mar 31 2020 16:09:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86797 * 119.99828 * 2 1 4 4 H 1.48499 * 109.47187 * 269.99761 * 3 2 1 5 5 H 1.48495 * 109.47337 * 30.00133 * 3 2 1 6 6 H 1.48501 * 109.46811 * 150.00349 * 3 2 1 7 7 C 1.38813 * 119.99901 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99897 * 160.41299 * 7 2 1 9 9 N 1.36941 * 120.00219 * 340.41870 * 7 2 1 10 10 C 1.50170 * 120.53531 * 336.71678 * 9 7 2 11 11 C 1.46241 * 107.53408 * 109.61371 * 10 9 7 12 12 C 1.52527 * 114.16022 * 58.48149 * 11 10 9 13 13 C 1.50306 * 105.32631 * 270.40937 * 12 11 10 14 14 H 1.08998 * 109.27590 * 337.52833 * 13 12 11 15 15 N 1.46506 * 109.23057 * 218.12006 * 13 12 11 16 16 C 1.34772 * 119.99954 * 153.81339 * 15 13 12 17 17 O 1.21549 * 120.00341 * 0.02562 * 16 15 13 18 18 C 1.47843 * 119.99985 * 180.02562 * 16 15 13 19 19 C 1.39502 * 120.04387 * 359.97438 * 18 16 15 20 20 C 1.37928 * 119.76913 * 180.02562 * 19 18 16 21 21 C 1.38260 * 120.09604 * 359.97438 * 20 19 18 22 22 C 1.38611 * 120.52975 * 359.97438 * 21 20 19 23 23 C 1.37977 * 119.93194 * 359.75865 * 22 21 20 24 24 C 1.51346 * 109.83834 * 180.30067 * 23 22 21 25 25 C 1.54354 * 105.14695 * 17.41015 * 24 23 22 26 26 C 1.51396 * 130.31313 * 179.97438 * 22 21 20 27 27 C 1.54838 * 110.69396 * 97.84233 * 13 12 11 28 28 C 1.43428 * 120.54131 * 156.74351 * 9 7 2 29 29 H 0.97000 * 120.00054 * 359.97438 * 1 2 3 30 30 H 1.09003 * 109.84921 * 350.10639 * 10 9 7 31 31 H 1.09004 * 109.84844 * 229.12016 * 10 9 7 32 32 H 1.08994 * 108.52627 * 179.64939 * 11 10 9 33 33 H 1.09005 * 108.52012 * 297.31744 * 11 10 9 34 34 H 1.09000 * 110.25099 * 29.49202 * 12 11 10 35 35 H 1.08998 * 110.24611 * 151.54742 * 12 11 10 36 36 H 0.96999 * 119.99913 * 333.81707 * 15 13 12 37 37 H 1.07995 * 120.10908 * 0.02637 * 19 18 16 38 38 H 1.07996 * 119.95099 * 180.02562 * 20 19 18 39 39 H 1.07999 * 119.73595 * 180.02562 * 21 20 19 40 40 H 1.08996 * 110.31246 * 136.32704 * 24 23 22 41 41 H 1.08998 * 110.30795 * 258.39733 * 24 23 22 42 42 H 1.08996 * 110.82834 * 91.91106 * 25 24 23 43 43 H 1.09002 * 110.82992 * 215.27589 * 25 24 23 44 44 H 1.08994 * 110.30804 * 281.76540 * 26 22 21 45 45 H 1.09005 * 110.30336 * 43.92212 * 26 22 21 46 46 H 1.09002 * 109.36187 * 200.92333 * 27 13 12 47 47 H 1.09003 * 109.36527 * 81.33098 * 27 13 12 48 48 H 1.09001 * 108.16255 * 33.25831 * 28 9 7 49 49 H 1.08992 * 108.16041 * 150.03933 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6526 0.7000 6 1 3.5478 1.4401 0.7000 7 6 2.0103 -1.2022 0.0005 8 1 3.0434 -1.2294 -0.3130 9 7 1.3850 -2.3537 0.3985 10 6 0.1858 -2.2980 1.3007 11 6 -0.9805 -2.6845 0.5077 12 6 -0.8800 -4.0734 -0.1147 13 6 -0.2311 -3.8626 -1.4540 14 1 -0.3825 -2.8300 -1.7686 15 7 -0.8463 -4.7603 -2.4348 16 6 -0.8460 -4.4321 -3.7419 17 8 -0.3351 -3.3914 -4.1072 18 6 -1.4673 -5.3378 -4.7317 19 6 -2.0535 -6.5326 -4.3136 20 6 -2.6310 -7.3736 -5.2419 21 6 -2.6292 -7.0329 -6.5818 22 6 -2.0500 -5.8473 -7.0061 23 6 -1.4739 -4.9948 -6.0867 24 6 -0.9218 -3.7752 -6.7927 25 6 -1.6096 -3.7632 -8.1744 26 6 -1.9229 -5.2618 -8.3965 27 6 1.2876 -4.1547 -1.3783 28 6 1.8651 -3.6324 -0.0391 29 1 -0.4850 0.8400 0.0004 30 1 0.0555 -1.2848 1.6810 31 1 0.3150 -2.9921 2.1312 32 1 -1.8608 -2.6556 1.1497 33 1 -1.1125 -1.9554 -0.2919 34 1 -0.2637 -4.7220 0.5079 35 1 -1.8737 -4.5028 -0.2413 36 1 -1.2538 -5.5910 -2.1434 37 1 -2.0551 -6.7981 -3.2668 38 1 -3.0861 -8.2991 -4.9214 39 1 -3.0834 -7.6955 -7.3036 40 1 -1.1720 -2.8712 -6.2377 41 1 0.1588 -3.8612 -6.9071 42 1 -2.5224 -3.1681 -8.1478 43 1 -0.9302 -3.3933 -8.9424 44 1 -1.1149 -5.7509 -8.9405 45 1 -2.8628 -5.3670 -8.9385 46 1 1.7927 -3.6590 -2.2073 47 1 1.4528 -5.2298 -1.4481 48 1 2.9491 -3.5731 -0.1368 49 1 1.6356 -4.3645 0.7350 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001052969897.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:09:26 Heat of formation + Delta-G solvation = 12.883971 kcal Electronic energy + Delta-G solvation = -28660.964938 eV Core-core repulsion = 24974.096431 eV Total energy + Delta-G solvation = -3686.868508 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 328.189 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -40.56391 -39.05649 -37.47967 -35.80846 -34.52543 -32.37476 -31.62211 -31.43862 -29.76420 -29.11580 -27.38094 -26.07707 -24.27873 -23.73992 -22.62783 -21.44048 -20.96863 -20.29715 -19.56660 -19.05049 -17.15698 -16.67342 -16.07571 -15.78146 -15.46327 -15.04717 -15.00052 -14.57119 -14.47459 -13.93933 -13.73606 -13.37968 -13.22985 -13.14965 -12.90304 -12.58829 -12.36345 -12.20343 -11.91918 -11.81105 -11.43546 -11.39597 -11.34140 -11.21369 -11.18112 -10.97889 -10.72391 -10.55851 -10.33426 -10.17735 -9.99418 -9.72420 -9.46507 -9.32228 -9.30769 -8.96066 -8.66030 -8.49869 -8.29376 -6.65396 -5.72696 -3.11072 0.84904 1.21660 3.05869 3.44004 3.51049 3.53182 3.55491 3.88320 4.25986 4.47087 4.57951 4.74859 4.81737 4.93892 4.97387 5.09217 5.31704 5.35244 5.40938 5.44335 5.56561 5.61088 5.65977 5.73398 5.77070 5.79674 5.92206 5.94688 6.05722 6.09848 6.16771 6.21829 6.28855 6.30852 6.34936 6.44787 6.48108 6.53273 6.74610 6.77371 6.92174 6.94410 6.98220 7.07565 7.19884 7.26503 7.63100 7.80693 7.94289 8.01975 8.49228 8.63866 9.25654 9.93204 10.45447 11.35165 Molecular weight = 328.19amu Principal moments of inertia in cm(-1) A = 0.016020 B = 0.003283 C = 0.002900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1747.449380 B = 8526.166526 C = 9652.054055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.004 3.996 3 Si 0.899 3.101 4 H -0.288 1.288 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.249 4.249 8 H 0.067 0.933 9 N -0.588 5.588 10 C 0.165 3.835 11 C -0.129 4.129 12 C -0.121 4.121 13 C 0.156 3.844 14 H 0.104 0.896 15 N -0.724 5.724 16 C 0.547 3.453 17 O -0.524 6.524 18 C -0.117 4.117 19 C -0.090 4.090 20 C -0.130 4.130 21 C -0.089 4.089 22 C -0.111 4.111 23 C -0.033 4.033 24 C -0.083 4.083 25 C -0.123 4.123 26 C -0.080 4.080 27 C -0.151 4.151 28 C 0.162 3.838 29 H 0.252 0.748 30 H 0.091 0.909 31 H 0.006 0.994 32 H 0.029 0.971 33 H 0.103 0.897 34 H 0.063 0.937 35 H 0.052 0.948 36 H 0.389 0.611 37 H 0.127 0.873 38 H 0.128 0.872 39 H 0.122 0.878 40 H 0.092 0.908 41 H 0.084 0.916 42 H 0.072 0.928 43 H 0.076 0.924 44 H 0.080 0.920 45 H 0.073 0.927 46 H 0.056 0.944 47 H 0.044 0.956 48 H 0.033 0.967 49 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.273 -15.620 -11.126 20.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.194 4.194 3 Si 0.729 3.271 4 H -0.215 1.215 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.378 4.378 8 H 0.085 0.915 9 N -0.309 5.309 10 C 0.041 3.959 11 C -0.168 4.168 12 C -0.159 4.159 13 C 0.053 3.947 14 H 0.122 0.878 15 N -0.375 5.375 16 C 0.333 3.667 17 O -0.401 6.401 18 C -0.120 4.120 19 C -0.108 4.108 20 C -0.148 4.148 21 C -0.107 4.107 22 C -0.111 4.111 23 C -0.034 4.034 24 C -0.120 4.120 25 C -0.161 4.161 26 C -0.117 4.117 27 C -0.193 4.193 28 C 0.032 3.968 29 H 0.062 0.938 30 H 0.109 0.891 31 H 0.024 0.976 32 H 0.048 0.952 33 H 0.121 0.879 34 H 0.081 0.919 35 H 0.071 0.929 36 H 0.223 0.777 37 H 0.145 0.855 38 H 0.146 0.854 39 H 0.140 0.860 40 H 0.110 0.890 41 H 0.103 0.897 42 H 0.091 0.909 43 H 0.095 0.905 44 H 0.099 0.901 45 H 0.092 0.908 46 H 0.074 0.926 47 H 0.062 0.938 48 H 0.051 0.949 49 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -6.983 -14.663 -11.333 19.804 hybrid contribution 0.086 0.223 0.040 0.242 sum -6.897 -14.441 -11.292 19.586 Atomic orbital electron populations 1.69960 1.05077 1.25173 1.54279 1.24872 0.95212 0.98173 1.01178 0.86347 0.79179 0.83944 0.77631 1.21548 1.21692 1.20688 1.19186 0.93643 0.85325 1.39669 0.91549 1.44266 1.33675 1.00880 1.52102 1.20169 0.85266 1.00547 0.89882 1.20936 0.98428 0.95000 1.02461 1.21404 0.98692 0.99775 0.96071 1.21322 0.92037 0.94913 0.86403 0.87834 1.46459 1.59468 1.24623 1.06922 1.18287 0.79884 0.85890 0.82626 1.90803 1.45026 1.24731 1.79502 1.19780 1.02881 0.96186 0.93187 1.21224 0.96723 0.93161 0.99729 1.20934 1.01068 1.00005 0.92816 1.20763 0.98487 0.95613 0.95861 1.20638 0.99359 0.94911 0.96198 1.20634 0.94815 0.96332 0.91582 1.21128 1.00298 0.96472 0.94073 1.22427 1.01045 0.95411 0.97205 1.21114 1.02069 0.95489 0.92985 1.23310 0.95368 0.98462 1.02174 1.20351 0.96347 0.88192 0.91868 0.93804 0.89130 0.97600 0.95208 0.87883 0.91867 0.92927 0.77722 0.85515 0.85414 0.86047 0.88993 0.89733 0.90890 0.90485 0.90125 0.90827 0.92560 0.93768 0.94851 0.95368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.33 9.43 55.49 0.52 -24.81 16 2 C 0.00 0.10 4.91 -17.43 -0.09 0.01 16 3 Si 0.90 22.05 29.60 -169.99 -5.03 17.02 16 4 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 5 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 6 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 7 C -0.25 -6.85 9.63 -15.06 -0.14 -7.00 16 8 H 0.07 1.83 7.89 -52.49 -0.41 1.42 16 9 N -0.59 -14.51 2.60 -175.08 -0.46 -14.97 16 10 C 0.16 3.82 5.24 -5.20 -0.03 3.79 16 11 C -0.13 -2.75 5.03 -30.19 -0.15 -2.90 16 12 C -0.12 -2.16 5.34 -28.32 -0.15 -2.31 16 13 C 0.16 3.04 2.24 -68.30 -0.15 2.89 16 14 H 0.10 2.60 6.22 -51.93 -0.32 2.27 16 15 N -0.72 -11.77 4.91 -55.11 -0.27 -12.04 16 16 C 0.55 9.78 7.74 -12.33 -0.10 9.69 16 17 O -0.52 -11.55 14.35 5.32 0.08 -11.48 16 18 C -0.12 -1.71 5.88 -104.92 -0.62 -2.33 16 19 C -0.09 -1.02 9.54 -39.22 -0.37 -1.39 16 20 C -0.13 -1.25 10.03 -39.69 -0.40 -1.65 16 21 C -0.09 -0.87 10.03 -39.44 -0.40 -1.27 16 22 C -0.11 -1.26 6.13 -104.24 -0.64 -1.90 16 23 C -0.03 -0.46 6.03 -103.82 -0.63 -1.08 16 24 C -0.08 -1.13 5.57 -26.86 -0.15 -1.28 16 25 C -0.12 -1.23 7.10 -25.12 -0.18 -1.41 16 26 C -0.08 -0.72 6.78 -26.64 -0.18 -0.90 16 27 C -0.15 -3.01 6.00 -24.76 -0.15 -3.16 16 28 C 0.16 3.44 5.18 -4.66 -0.02 3.42 16 29 H 0.25 6.97 8.31 -40.82 -0.34 6.63 16 30 H 0.09 2.35 6.05 -51.93 -0.31 2.03 16 31 H 0.01 0.13 8.12 -51.93 -0.42 -0.30 16 32 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.10 2.61 5.29 -51.93 -0.27 2.33 16 34 H 0.06 1.07 6.27 -51.93 -0.33 0.74 16 35 H 0.05 0.81 7.87 -51.93 -0.41 0.40 16 36 H 0.39 4.93 6.53 -40.82 -0.27 4.66 16 37 H 0.13 1.15 6.40 -52.49 -0.34 0.81 16 38 H 0.13 0.86 8.06 -52.49 -0.42 0.44 16 39 H 0.12 0.87 8.06 -52.49 -0.42 0.44 16 40 H 0.09 1.46 7.19 -51.93 -0.37 1.09 16 41 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 42 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 43 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 44 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 45 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 46 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 47 H 0.04 0.77 8.12 -51.93 -0.42 0.34 16 48 H 0.03 0.71 7.99 -51.93 -0.41 0.30 16 49 H 0.03 0.54 6.86 -51.93 -0.36 0.19 16 LS Contribution 372.82 15.07 5.62 5.62 Total: -1.00 -31.27 372.82 -11.67 -42.94 By element: Atomic # 1 Polarization: 14.07 SS G_CDS: -7.59 Total: 6.48 kcal Atomic # 6 Polarization: -4.22 SS G_CDS: -4.54 Total: -8.76 kcal Atomic # 7 Polarization: -51.62 SS G_CDS: -0.20 Total: -51.82 kcal Atomic # 8 Polarization: -11.55 SS G_CDS: 0.08 Total: -11.48 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.03 Total: 17.02 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -31.27 -11.67 -42.94 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052969897.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.822 kcal (2) G-P(sol) polarization free energy of solvation -31.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.938 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds