Wall clock time and date at job start Tue Mar 31 2020 16:09:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86791 * 119.99756 * 2 1 4 4 H 1.48503 * 109.47125 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47410 * 300.00123 * 3 2 1 6 6 H 1.48504 * 109.47216 * 60.00557 * 3 2 1 7 7 C 1.38813 * 119.99942 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00185 * 195.68286 * 7 2 1 9 9 N 1.36940 * 119.99893 * 15.67549 * 7 2 1 10 10 C 1.44579 * 118.64134 * 206.48735 * 9 7 2 11 11 C 1.54869 * 109.60199 * 270.72679 * 10 9 7 12 12 C 1.47083 * 110.32077 * 288.73526 * 11 10 9 13 13 C 1.52568 * 114.32891 * 62.80105 * 12 11 10 14 14 H 1.09002 * 109.48917 * 34.97732 * 13 12 11 15 15 N 1.46505 * 109.49032 * 155.01844 * 13 12 11 16 16 C 1.34772 * 119.99938 * 205.00065 * 15 13 12 17 17 O 1.21561 * 120.00133 * 0.02562 * 16 15 13 18 18 C 1.47849 * 120.00343 * 179.97438 * 16 15 13 19 19 C 1.39498 * 120.03686 * 0.27132 * 18 16 15 20 20 C 1.37927 * 119.76521 * 180.25504 * 19 18 16 21 21 C 1.38257 * 120.09900 * 359.49537 * 20 19 18 22 22 C 1.38621 * 120.52548 * 0.23154 * 21 20 19 23 23 C 1.37971 * 119.92829 * 0.02562 * 22 21 20 24 24 C 1.51353 * 109.83033 * 180.02562 * 23 22 21 25 25 C 1.54351 * 105.15053 * 342.83239 * 24 23 22 26 26 C 1.51404 * 130.31032 * 180.02562 * 22 21 20 27 27 C 1.50877 * 109.35893 * 274.98607 * 13 12 11 28 28 C 1.47600 * 118.64531 * 26.46823 * 9 7 2 29 29 H 0.96992 * 120.00077 * 359.97438 * 1 2 3 30 30 H 1.08997 * 109.45129 * 150.68790 * 10 9 7 31 31 H 1.09004 * 109.42748 * 30.75543 * 10 9 7 32 32 H 1.08999 * 109.32893 * 168.46995 * 11 10 9 33 33 H 1.09006 * 109.32666 * 48.99507 * 11 10 9 34 34 H 1.09002 * 108.51606 * 301.54574 * 12 11 10 35 35 H 1.09007 * 108.51434 * 184.05400 * 12 11 10 36 36 H 0.96999 * 119.99787 * 25.00381 * 15 13 12 37 37 H 1.08003 * 120.11693 * 0.03034 * 19 18 16 38 38 H 1.08001 * 119.95334 * 179.77615 * 20 19 18 39 39 H 1.08004 * 119.73991 * 180.25388 * 21 20 19 40 40 H 1.08994 * 110.30971 * 223.91108 * 24 23 22 41 41 H 1.09005 * 110.30702 * 101.75175 * 24 23 22 42 42 H 1.08996 * 110.82744 * 268.08635 * 25 24 23 43 43 H 1.09002 * 110.82956 * 144.51861 * 25 24 23 44 44 H 1.08994 * 110.30011 * 316.07670 * 26 22 21 45 45 H 1.09005 * 110.30112 * 78.13293 * 26 22 21 46 46 H 1.09002 * 109.36833 * 212.07808 * 27 13 12 47 47 H 1.08995 * 109.36938 * 331.69000 * 27 13 12 48 48 H 1.08998 * 108.94871 * 258.55255 * 28 9 7 49 49 H 1.09004 * 108.94896 * 17.26875 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8915 2.3964 1.2126 7 6 2.0103 -1.2022 -0.0005 8 1 3.0602 -1.2197 0.2523 9 7 1.3638 -2.3659 -0.3215 10 6 1.8694 -3.6100 0.2141 11 6 2.9231 -4.2023 -0.7541 12 6 2.2711 -4.7060 -1.9725 13 6 1.5628 -3.6341 -2.7953 14 1 2.1223 -2.7006 -2.7353 15 7 1.4804 -4.0655 -4.1929 16 6 1.3764 -3.1494 -5.1760 17 8 1.3514 -1.9651 -4.9030 18 6 1.2938 -3.5847 -6.5865 19 6 1.3178 -4.9437 -6.9004 20 6 1.2458 -5.3434 -8.2185 21 6 1.1396 -4.4005 -9.2241 22 6 1.1093 -3.0482 -8.9210 23 6 1.1860 -2.6355 -7.6067 24 6 1.1324 -1.1244 -7.5391 25 6 1.4542 -0.6449 -8.9705 26 6 0.9994 -1.8428 -9.8305 27 6 0.1716 -3.4235 -2.2506 28 6 0.1793 -2.2983 -1.1995 29 1 -0.4850 0.8400 0.0004 30 1 1.0469 -4.3156 0.3312 31 1 2.3308 -3.4261 1.1844 32 1 3.4468 -5.0209 -0.2604 33 1 3.6415 -3.4279 -1.0230 34 1 1.5401 -5.4622 -1.6866 35 1 3.0270 -5.1798 -2.5989 36 1 1.5007 -5.0105 -4.4108 37 1 1.3962 -5.6802 -6.1143 38 1 1.2678 -6.3946 -8.4653 39 1 1.0795 -4.7201 -10.2541 40 1 1.8785 -0.7504 -6.8381 41 1 0.1363 -0.7940 -7.2444 42 1 2.5231 -0.4674 -9.0886 43 1 0.8821 0.2494 -9.2175 44 1 1.6545 -1.9594 -10.6937 45 1 -0.0323 -1.7067 -10.1550 46 1 -0.4987 -3.1518 -3.0661 47 1 -0.1795 -4.3464 -1.7892 48 1 -0.7195 -2.3785 -0.5882 49 1 0.1733 -1.3365 -1.7125 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001052969898.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:09:30 Heat of formation + Delta-G solvation = 5.406625 kcal Electronic energy + Delta-G solvation = -28673.005585 eV Core-core repulsion = 24985.812836 eV Total energy + Delta-G solvation = -3687.192750 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 328.189 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.61643 -39.15208 -37.44689 -35.84676 -34.57957 -32.84206 -31.83565 -30.79304 -30.21932 -29.15247 -27.43583 -25.94616 -24.41156 -23.40840 -23.02242 -21.46787 -21.06479 -20.16445 -19.76284 -19.15419 -17.22427 -16.57383 -16.19285 -15.82188 -15.60455 -15.23490 -14.96516 -14.60856 -14.39985 -14.14266 -13.71657 -13.35158 -13.25511 -13.12714 -12.89735 -12.78997 -12.62278 -12.37670 -11.93612 -11.87281 -11.53385 -11.44002 -11.37194 -11.22404 -11.03223 -10.98209 -10.80876 -10.72146 -10.33034 -10.14983 -10.02027 -9.88265 -9.65391 -9.51781 -9.40861 -9.00126 -8.69388 -8.59978 -8.27503 -6.57409 -5.67973 -3.11658 0.81301 1.18926 3.01220 3.43774 3.46002 3.53987 3.55268 3.83859 4.23743 4.45540 4.60141 4.71032 4.77365 4.92008 4.96186 5.06565 5.19383 5.29267 5.33183 5.36784 5.54055 5.55610 5.61604 5.65316 5.72738 5.76343 5.79586 5.92187 6.05536 6.06948 6.15696 6.16414 6.18891 6.25191 6.26659 6.36211 6.43877 6.50324 6.54317 6.65546 6.73619 6.75365 6.83146 6.90039 7.06342 7.12870 7.53369 7.80987 7.84665 7.93747 8.56009 8.58038 9.34140 10.01338 10.45555 11.39589 Molecular weight = 328.19amu Principal moments of inertia in cm(-1) A = 0.013506 B = 0.003639 C = 0.003039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2072.693208 B = 7691.625234 C = 9210.847579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.007 3.993 3 Si 0.898 3.102 4 H -0.278 1.278 5 H -0.289 1.289 6 H -0.292 1.292 7 C -0.258 4.258 8 H 0.065 0.935 9 N -0.591 5.591 10 C 0.157 3.843 11 C -0.145 4.145 12 C -0.106 4.106 13 C 0.155 3.845 14 H 0.103 0.897 15 N -0.724 5.724 16 C 0.548 3.452 17 O -0.519 6.519 18 C -0.118 4.118 19 C -0.090 4.090 20 C -0.131 4.131 21 C -0.088 4.088 22 C -0.110 4.110 23 C -0.031 4.031 24 C -0.084 4.084 25 C -0.123 4.123 26 C -0.080 4.080 27 C -0.146 4.146 28 C 0.184 3.816 29 H 0.252 0.748 30 H 0.032 0.968 31 H 0.046 0.954 32 H 0.051 0.949 33 H 0.062 0.938 34 H 0.053 0.947 35 H 0.046 0.954 36 H 0.389 0.611 37 H 0.127 0.873 38 H 0.128 0.872 39 H 0.122 0.878 40 H 0.092 0.908 41 H 0.086 0.914 42 H 0.072 0.928 43 H 0.077 0.923 44 H 0.074 0.926 45 H 0.080 0.920 46 H 0.055 0.945 47 H 0.045 0.955 48 H 0.025 0.975 49 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.955 -11.840 -18.593 22.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.191 4.191 3 Si 0.728 3.272 4 H -0.203 1.203 5 H -0.215 1.215 6 H -0.219 1.219 7 C -0.388 4.388 8 H 0.082 0.918 9 N -0.313 5.313 10 C 0.028 3.972 11 C -0.186 4.186 12 C -0.144 4.144 13 C 0.052 3.948 14 H 0.121 0.879 15 N -0.375 5.375 16 C 0.334 3.666 17 O -0.395 6.395 18 C -0.121 4.121 19 C -0.108 4.108 20 C -0.148 4.148 21 C -0.106 4.106 22 C -0.111 4.111 23 C -0.032 4.032 24 C -0.120 4.120 25 C -0.161 4.161 26 C -0.117 4.117 27 C -0.186 4.186 28 C 0.058 3.942 29 H 0.062 0.938 30 H 0.050 0.950 31 H 0.064 0.936 32 H 0.070 0.930 33 H 0.081 0.919 34 H 0.072 0.928 35 H 0.065 0.935 36 H 0.223 0.777 37 H 0.145 0.855 38 H 0.146 0.854 39 H 0.140 0.860 40 H 0.110 0.890 41 H 0.104 0.896 42 H 0.090 0.910 43 H 0.096 0.904 44 H 0.092 0.908 45 H 0.098 0.902 46 H 0.074 0.926 47 H 0.063 0.937 48 H 0.043 0.957 49 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 1.802 -10.833 -18.351 21.386 hybrid contribution 0.363 0.129 -0.154 0.415 sum 2.165 -10.704 -18.505 21.487 Atomic orbital electron populations 1.70065 1.05234 1.25229 1.54185 1.25000 0.95227 0.98299 1.00617 0.86287 0.79405 0.84299 0.77160 1.20325 1.21522 1.21865 1.19212 0.92356 0.85047 1.42189 0.91751 1.43681 1.32394 1.01897 1.53286 1.20692 0.93878 0.88408 0.94183 1.21447 1.00348 0.99949 0.96885 1.20564 0.99114 0.97472 0.97260 1.20537 0.97691 0.99296 0.77309 0.87865 1.46265 1.74866 1.09029 1.07375 1.18269 0.77284 0.86241 0.84781 1.90835 1.48548 1.16359 1.83752 1.19735 1.05856 0.93286 0.93225 1.21214 0.98343 0.94294 0.96975 1.20933 1.02015 0.99512 0.92387 1.20773 0.98798 0.91608 0.99459 1.20648 1.01098 0.94328 0.94982 1.20632 0.94368 0.96061 0.92173 1.21144 1.03836 0.89851 0.97202 1.22361 1.01699 0.97462 0.94568 1.21054 1.01956 0.91421 0.97259 1.22448 0.95469 1.00829 0.99902 1.20939 0.88471 0.95678 0.89109 0.93812 0.95011 0.93593 0.93048 0.91934 0.92844 0.93482 0.77682 0.85537 0.85406 0.86019 0.88958 0.89603 0.90969 0.90393 0.90759 0.90175 0.92645 0.93655 0.95713 0.90361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.98 11.01 55.49 0.61 -26.37 16 2 C 0.01 0.21 4.87 -17.43 -0.08 0.12 16 3 Si 0.90 22.69 29.58 -169.99 -5.03 17.66 16 4 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 5 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 6 H -0.29 -7.34 7.11 56.52 0.40 -6.93 16 7 C -0.26 -7.21 9.44 -15.06 -0.14 -7.35 16 8 H 0.06 1.78 7.88 -52.49 -0.41 1.36 16 9 N -0.59 -14.84 2.27 -172.07 -0.39 -15.23 16 10 C 0.16 3.25 5.66 -4.08 -0.02 3.22 16 11 C -0.15 -2.53 5.74 -28.59 -0.16 -2.70 16 12 C -0.11 -1.67 4.69 -29.79 -0.14 -1.81 16 13 C 0.15 2.84 2.06 -69.21 -0.14 2.69 16 14 H 0.10 2.38 6.92 -51.93 -0.36 2.02 16 15 N -0.72 -11.11 4.88 -56.00 -0.27 -11.38 16 16 C 0.55 9.44 7.59 -12.33 -0.09 9.34 16 17 O -0.52 -11.16 14.36 5.31 0.08 -11.08 16 18 C -0.12 -1.67 5.88 -104.92 -0.62 -2.28 16 19 C -0.09 -0.97 9.54 -39.23 -0.37 -1.34 16 20 C -0.13 -1.20 10.03 -39.69 -0.40 -1.60 16 21 C -0.09 -0.84 10.03 -39.43 -0.40 -1.23 16 22 C -0.11 -1.23 6.13 -104.23 -0.64 -1.87 16 23 C -0.03 -0.43 6.03 -103.83 -0.63 -1.06 16 24 C -0.08 -1.13 5.58 -26.85 -0.15 -1.28 16 25 C -0.12 -1.22 7.08 -25.33 -0.18 -1.40 16 26 C -0.08 -0.71 6.77 -26.85 -0.18 -0.90 16 27 C -0.15 -2.92 5.39 -27.29 -0.15 -3.06 16 28 C 0.18 4.56 4.67 -2.93 -0.01 4.55 16 29 H 0.25 7.31 8.31 -40.82 -0.34 6.97 16 30 H 0.03 0.62 8.07 -51.93 -0.42 0.20 16 31 H 0.05 0.97 7.99 -51.93 -0.41 0.55 16 32 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 34 H 0.05 0.77 7.36 -51.93 -0.38 0.39 16 35 H 0.05 0.65 8.04 -51.92 -0.42 0.23 16 36 H 0.39 4.57 6.63 -40.82 -0.27 4.30 16 37 H 0.13 1.07 6.40 -52.48 -0.34 0.73 16 38 H 0.13 0.82 8.06 -52.49 -0.42 0.40 16 39 H 0.12 0.84 8.06 -52.48 -0.42 0.42 16 40 H 0.09 1.44 7.18 -51.93 -0.37 1.07 16 41 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 42 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 43 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 44 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 45 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 46 H 0.05 1.12 7.85 -51.93 -0.41 0.72 16 47 H 0.04 0.82 7.32 -51.93 -0.38 0.44 16 48 H 0.02 0.66 8.03 -51.93 -0.42 0.25 16 49 H 0.08 2.25 6.33 -51.93 -0.33 1.92 16 LS Contribution 378.01 15.07 5.70 5.70 Total: -1.00 -32.68 378.01 -11.68 -44.36 By element: Atomic # 1 Polarization: 12.15 SS G_CDS: -7.86 Total: 4.30 kcal Atomic # 6 Polarization: -3.43 SS G_CDS: -4.51 Total: -7.95 kcal Atomic # 7 Polarization: -52.93 SS G_CDS: -0.05 Total: -52.98 kcal Atomic # 8 Polarization: -11.16 SS G_CDS: 0.08 Total: -11.08 kcal Atomic # 14 Polarization: 22.69 SS G_CDS: -5.03 Total: 17.66 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -32.68 -11.68 -44.36 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052969898.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.766 kcal (2) G-P(sol) polarization free energy of solvation -32.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.360 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds