Wall clock time and date at job start Tue Mar 31 2020 16:05:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86802 * 119.99788 * 2 1 4 4 H 1.48501 * 109.47189 * 179.97438 * 3 2 1 5 5 H 1.48506 * 109.47089 * 299.99626 * 3 2 1 6 6 H 1.48497 * 109.47484 * 59.99673 * 3 2 1 7 7 C 1.38812 * 120.00542 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00745 * 180.02562 * 7 2 1 9 9 N 1.36936 * 119.99709 * 0.02562 * 7 2 1 10 10 C 1.46643 * 126.56262 * 0.03788 * 9 7 2 11 11 C 1.50778 * 107.70170 * 179.97438 * 10 9 7 12 12 C 1.38440 * 131.20354 * 180.02562 * 11 10 9 13 13 C 1.38151 * 120.10007 * 179.80197 * 12 11 10 14 14 C 1.38250 * 119.96416 * 0.45083 * 13 12 11 15 15 C 1.50701 * 120.02188 * 179.78655 * 14 13 12 16 16 N 1.46499 * 109.46992 * 269.72005 * 15 14 13 17 17 C 1.34779 * 119.99872 * 179.97438 * 16 15 14 18 18 O 1.21278 * 120.00071 * 359.97438 * 17 16 15 19 19 C 1.50703 * 119.99944 * 180.02562 * 17 16 15 20 20 C 1.52996 * 109.46946 * 299.99948 * 19 17 16 21 21 C 1.53005 * 109.47245 * 179.97438 * 20 19 17 22 22 C 1.53000 * 109.46632 * 59.99973 * 21 20 19 23 23 C 1.52996 * 109.47518 * 300.00318 * 22 21 20 24 24 C 1.52997 * 109.47084 * 180.02562 * 19 17 16 25 25 C 1.38147 * 119.95962 * 359.50741 * 14 13 12 26 26 C 1.38073 * 108.86008 * 359.97438 * 11 10 9 27 27 C 1.46635 * 126.56820 * 180.02562 * 9 7 2 28 28 H 0.96997 * 120.00294 * 0.02562 * 1 2 3 29 29 H 1.09000 * 109.80993 * 299.51423 * 10 9 7 30 30 H 1.09002 * 109.81097 * 60.34863 * 10 9 7 31 31 H 1.07996 * 119.95560 * 0.02562 * 12 11 10 32 32 H 1.08002 * 120.01678 * 180.20777 * 13 12 11 33 33 H 1.09002 * 109.47060 * 29.72217 * 15 14 13 34 34 H 1.09001 * 109.47380 * 149.72305 * 15 14 13 35 35 H 0.97000 * 120.00420 * 0.02562 * 16 15 14 36 36 H 1.09001 * 109.46980 * 60.00059 * 19 17 16 37 37 H 1.09001 * 109.47372 * 299.99872 * 20 19 17 38 38 H 1.09004 * 109.47108 * 60.00127 * 20 19 17 39 39 H 1.09001 * 109.46962 * 300.00283 * 21 20 19 40 40 H 1.08992 * 109.47457 * 180.02562 * 21 20 19 41 41 H 1.09000 * 109.46968 * 180.02562 * 22 21 20 42 42 H 1.09001 * 109.47194 * 60.00452 * 22 21 20 43 43 H 1.09001 * 109.46993 * 299.99696 * 23 22 21 44 44 H 1.09000 * 109.47380 * 180.02562 * 23 22 21 45 45 H 1.09002 * 109.47045 * 299.99967 * 24 19 17 46 46 H 1.09001 * 109.47375 * 60.00042 * 24 19 17 47 47 H 1.08001 * 119.94856 * 180.25682 * 25 14 13 48 48 H 1.08994 * 109.81198 * 60.47686 * 27 9 7 49 49 H 1.09006 * 109.80716 * 299.58041 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7102 1.3465 0.0006 5 1 1.8914 2.3965 -1.2126 6 1 1.8914 2.3966 1.2124 7 6 2.0104 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3257 -2.3880 0.0005 10 6 -0.1311 -2.5557 -0.0008 11 6 -0.4223 -4.0351 -0.0009 12 6 -1.6204 -4.7287 -0.0023 13 6 -1.6212 -6.1102 -0.0062 14 6 -0.4239 -6.8014 0.0008 15 6 -0.4233 -8.3084 0.0015 16 7 -0.4241 -8.7961 1.3829 17 6 -0.4243 -10.1211 1.6298 18 8 -0.4242 -10.9096 0.7083 19 6 -0.4257 -10.6228 3.0508 20 6 0.8227 -10.1124 3.7731 21 6 0.8210 -10.6212 5.2161 22 6 0.8208 -12.1512 5.2172 23 6 -0.4276 -12.6616 4.4949 24 6 -0.4250 -12.1527 3.0515 25 6 0.7720 -6.1098 0.0014 26 6 0.7735 -4.7254 -0.0003 27 6 1.9089 -3.7334 0.0016 28 1 -0.4850 0.8400 -0.0004 29 1 -0.5567 -2.0955 0.8910 30 1 -0.5552 -2.0944 -0.8927 31 1 -2.5559 -4.1890 -0.0041 32 1 -2.5567 -6.6499 -0.0107 33 1 -1.3128 -8.6723 -0.5129 34 1 0.4672 -8.6716 -0.5115 35 1 -0.4253 -8.1655 2.1199 36 1 -1.3163 -10.2593 3.5636 37 1 1.7133 -10.4759 3.2603 38 1 0.8226 -9.0223 3.7726 39 1 -0.0695 -10.2573 5.7285 40 1 1.7102 -10.2572 5.7307 41 1 0.8192 -12.5137 6.2452 42 1 1.7114 -12.5150 4.7047 43 1 -1.3181 -12.2979 5.0074 44 1 -0.4279 -13.7516 4.4961 45 1 -1.3142 -12.5167 2.5368 46 1 0.4658 -12.5159 2.5389 47 1 1.7072 -6.6499 0.0027 48 1 2.5187 -3.8710 0.8944 49 1 2.5210 -3.8714 -0.8898 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054252332.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:05:07 Heat of formation + Delta-G solvation = -9.683411 kcal Electronic energy + Delta-G solvation = -27100.193586 eV Core-core repulsion = 23412.346483 eV Total energy + Delta-G solvation = -3687.847103 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 328.189 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.42746 -39.61642 -37.88080 -36.35517 -34.54662 -32.37663 -31.70557 -31.06959 -30.89777 -29.67988 -27.47660 -26.05204 -24.78451 -23.44090 -22.82324 -22.04690 -20.68160 -20.45654 -20.19681 -19.81103 -17.42201 -17.04984 -16.25315 -15.75286 -15.46220 -15.31686 -14.75824 -14.62182 -14.45961 -14.36594 -14.30094 -14.07209 -13.95677 -13.22502 -13.04839 -12.97971 -12.73646 -12.52566 -12.33884 -11.96115 -11.86843 -11.69406 -11.60193 -11.57608 -11.47058 -11.11167 -10.97812 -10.88308 -10.76783 -10.50783 -10.44821 -10.24554 -10.14576 -9.85943 -9.82654 -9.17424 -8.98595 -8.44715 -8.04892 -6.89132 -5.85241 -3.18593 1.55410 1.71535 2.51688 3.16613 3.34568 3.39894 3.42642 4.10034 4.30670 4.36277 4.37723 4.39707 4.69078 4.83565 4.85386 4.90936 4.97647 5.05340 5.12699 5.16856 5.22696 5.27413 5.29161 5.39800 5.47909 5.48586 5.54969 5.66095 5.68882 5.72480 5.76280 5.83069 5.83378 5.89782 5.97180 5.99436 6.08387 6.10303 6.29912 6.46945 6.50745 6.52166 6.73852 6.76597 7.02188 7.29206 7.31283 7.40298 7.49543 7.65710 8.09501 8.10168 9.07712 9.67558 10.34447 11.28944 Molecular weight = 328.19amu Principal moments of inertia in cm(-1) A = 0.021134 B = 0.002146 C = 0.002033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1324.579561 B =13044.150572 C =13766.176329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.008 4.008 3 Si 0.918 3.082 4 H -0.278 1.278 5 H -0.289 1.289 6 H -0.289 1.289 7 C -0.226 4.226 8 H 0.084 0.916 9 N -0.601 5.601 10 C 0.205 3.795 11 C -0.081 4.081 12 C -0.112 4.112 13 C -0.104 4.104 14 C -0.132 4.132 15 C 0.169 3.831 16 N -0.723 5.723 17 C 0.515 3.485 18 O -0.544 6.544 19 C -0.106 4.106 20 C -0.112 4.112 21 C -0.118 4.118 22 C -0.122 4.122 23 C -0.120 4.120 24 C -0.099 4.099 25 C -0.084 4.084 26 C -0.106 4.106 27 C 0.175 3.825 28 H 0.255 0.745 29 H 0.064 0.936 30 H 0.065 0.935 31 H 0.121 0.879 32 H 0.118 0.882 33 H 0.072 0.928 34 H 0.072 0.928 35 H 0.403 0.597 36 H 0.096 0.904 37 H 0.068 0.932 38 H 0.069 0.931 39 H 0.064 0.936 40 H 0.066 0.934 41 H 0.061 0.939 42 H 0.062 0.938 43 H 0.062 0.938 44 H 0.064 0.936 45 H 0.068 0.932 46 H 0.069 0.931 47 H 0.116 0.884 48 H 0.036 0.964 49 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.503 -22.132 8.619 23.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.204 4.204 3 Si 0.748 3.252 4 H -0.203 1.203 5 H -0.216 1.216 6 H -0.216 1.216 7 C -0.353 4.353 8 H 0.102 0.898 9 N -0.327 5.327 10 C 0.081 3.919 11 C -0.082 4.082 12 C -0.130 4.130 13 C -0.122 4.122 14 C -0.132 4.132 15 C 0.047 3.953 16 N -0.375 5.375 17 C 0.301 3.699 18 O -0.422 6.422 19 C -0.127 4.127 20 C -0.150 4.150 21 C -0.156 4.156 22 C -0.160 4.160 23 C -0.157 4.157 24 C -0.136 4.136 25 C -0.103 4.103 26 C -0.107 4.107 27 C 0.050 3.950 28 H 0.065 0.935 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.139 0.861 32 H 0.136 0.864 33 H 0.091 0.909 34 H 0.091 0.909 35 H 0.237 0.763 36 H 0.114 0.886 37 H 0.087 0.913 38 H 0.087 0.913 39 H 0.083 0.917 40 H 0.085 0.915 41 H 0.080 0.920 42 H 0.081 0.919 43 H 0.081 0.919 44 H 0.083 0.917 45 H 0.087 0.913 46 H 0.088 0.912 47 H 0.134 0.866 48 H 0.054 0.946 49 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -2.521 -22.447 7.931 23.940 hybrid contribution 0.326 1.308 0.274 1.375 sum -2.196 -21.139 8.204 22.782 Atomic orbital electron populations 1.69929 1.04989 1.25399 1.56680 1.24847 0.95831 0.97903 1.01840 0.85949 0.78707 0.83209 0.77317 1.20346 1.21597 1.21601 1.19027 0.90515 0.81422 1.44337 0.89783 1.43971 1.01210 0.99867 1.87697 1.19744 0.85620 0.84712 1.01855 1.21548 0.92965 0.99271 0.94421 1.20499 0.97291 0.93401 1.01855 1.20822 0.96941 0.93838 1.00635 1.19471 0.93488 0.93819 1.06425 1.20095 1.02619 0.89735 0.82898 1.46218 1.75203 1.07012 1.09081 1.20719 0.75601 0.82107 0.91455 1.90691 1.49638 1.55342 1.46501 1.21365 1.00722 0.97939 0.92699 1.21544 0.96840 1.00674 0.95896 1.21528 1.02302 0.95750 0.95993 1.21570 0.98412 0.95647 1.00347 1.21572 0.98223 1.00433 0.95521 1.21345 1.03367 0.92490 0.96444 1.20298 0.97151 0.92472 1.00376 1.20722 0.97019 0.93369 0.99577 1.19704 0.92302 0.84342 0.98678 0.93495 0.91787 0.91760 0.86121 0.86358 0.90933 0.90939 0.76285 0.88576 0.91294 0.91265 0.91699 0.91541 0.91989 0.91886 0.91933 0.91728 0.91308 0.91200 0.86576 0.94602 0.94581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.46 10.44 55.49 0.58 -25.89 16 2 C -0.01 -0.21 5.49 -17.43 -0.10 -0.31 16 3 Si 0.92 21.61 29.55 -169.99 -5.02 16.59 16 4 H -0.28 -6.34 7.11 56.52 0.40 -5.93 16 5 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 6 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 7 C -0.23 -6.19 10.32 -15.06 -0.16 -6.34 16 8 H 0.08 2.21 7.83 -52.49 -0.41 1.80 16 9 N -0.60 -15.41 3.41 -175.67 -0.60 -16.00 16 10 C 0.21 4.97 5.40 -5.08 -0.03 4.94 16 11 C -0.08 -1.59 6.22 -104.57 -0.65 -2.24 16 12 C -0.11 -1.82 10.05 -39.54 -0.40 -2.21 16 13 C -0.10 -1.42 9.70 -39.61 -0.38 -1.80 16 14 C -0.13 -1.75 5.25 -104.65 -0.55 -2.30 16 15 C 0.17 1.98 5.80 -5.19 -0.03 1.95 16 16 N -0.72 -7.49 5.44 -61.47 -0.33 -7.82 16 17 C 0.51 5.78 7.15 -10.98 -0.08 5.70 16 18 O -0.54 -8.13 15.98 5.56 0.09 -8.05 16 19 C -0.11 -0.87 2.53 -91.77 -0.23 -1.10 16 20 C -0.11 -0.81 5.10 -26.73 -0.14 -0.94 16 21 C -0.12 -0.73 5.92 -26.73 -0.16 -0.89 16 22 C -0.12 -0.74 5.92 -26.73 -0.16 -0.90 16 23 C -0.12 -0.77 5.93 -26.71 -0.16 -0.92 16 24 C -0.10 -0.82 4.49 -26.71 -0.12 -0.94 16 25 C -0.08 -1.26 9.70 -39.54 -0.38 -1.65 16 26 C -0.11 -1.98 6.22 -104.57 -0.65 -2.63 16 27 C 0.18 3.70 7.25 -5.09 -0.04 3.67 16 28 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 29 H 0.06 1.69 7.49 -51.93 -0.39 1.31 16 30 H 0.06 1.71 7.49 -51.93 -0.39 1.32 16 31 H 0.12 1.78 8.06 -52.49 -0.42 1.35 16 32 H 0.12 1.33 8.06 -52.49 -0.42 0.91 16 33 H 0.07 0.85 8.08 -51.93 -0.42 0.43 16 34 H 0.07 0.88 8.09 -51.93 -0.42 0.46 16 35 H 0.40 3.60 7.88 -40.82 -0.32 3.27 16 36 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 38 H 0.07 0.47 7.56 -51.93 -0.39 0.08 16 39 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 40 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 41 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 42 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 43 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 44 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 45 H 0.07 0.63 8.10 -51.93 -0.42 0.21 16 46 H 0.07 0.66 8.10 -51.93 -0.42 0.24 16 47 H 0.12 1.53 8.06 -52.49 -0.42 1.11 16 48 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 49 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 LS Contribution 389.11 15.07 5.86 5.86 Total: -1.00 -31.07 389.11 -12.04 -43.11 By element: Atomic # 1 Polarization: 9.33 SS G_CDS: -8.22 Total: 1.12 kcal Atomic # 6 Polarization: -4.52 SS G_CDS: -4.40 Total: -8.92 kcal Atomic # 7 Polarization: -49.36 SS G_CDS: -0.35 Total: -49.71 kcal Atomic # 8 Polarization: -8.13 SS G_CDS: 0.09 Total: -8.05 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -31.07 -12.04 -43.11 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054252332.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.426 kcal (2) G-P(sol) polarization free energy of solvation -31.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.109 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds