Wall clock time and date at job start Tue Mar 31 2020 16:14:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86803 * 120.00251 * 2 1 4 4 H 1.48508 * 109.46872 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47141 * 300.00189 * 3 2 1 6 6 H 1.48498 * 109.47018 * 60.00235 * 3 2 1 7 7 C 1.38817 * 119.99888 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99823 * 179.97438 * 7 2 1 9 9 N 1.36931 * 119.99680 * 0.27479 * 7 2 1 10 10 C 1.46505 * 119.99788 * 179.72358 * 9 7 2 11 11 H 1.08994 * 109.47052 * 35.00019 * 10 9 7 12 12 C 1.53006 * 109.46692 * 274.99780 * 10 9 7 13 13 C 1.53012 * 109.46635 * 179.97438 * 12 10 9 14 14 C 1.52999 * 109.46981 * 60.00016 * 13 12 10 15 15 C 1.53001 * 109.47259 * 300.00142 * 14 13 12 16 16 C 1.52995 * 109.47024 * 155.00126 * 10 9 7 17 17 H 1.09002 * 109.47452 * 59.99785 * 16 10 9 18 18 N 1.46495 * 109.47436 * 300.00014 * 16 10 9 19 19 C 1.34770 * 120.00960 * 155.00040 * 18 16 10 20 20 O 1.21290 * 119.99674 * 0.02562 * 19 18 16 21 21 C 1.50701 * 120.00782 * 180.02562 * 19 18 16 22 22 C 1.54340 * 110.81986 * 292.97182 * 21 19 18 23 23 C 1.51372 * 105.16944 * 215.42432 * 22 21 19 24 24 C 1.38496 * 130.38751 * 197.16212 * 23 22 21 25 25 C 1.38102 * 120.21247 * 180.02562 * 24 23 22 26 26 C 1.38250 * 119.93370 * 359.97438 * 25 24 23 27 27 C 1.38096 * 119.93990 * 359.97438 * 26 25 24 28 28 C 1.38209 * 109.75910 * 17.19634 * 23 22 21 29 29 C 1.51372 * 109.76083 * 359.97438 * 28 23 22 30 30 H 0.97005 * 119.99715 * 359.97438 * 1 2 3 31 31 H 0.97000 * 120.00420 * 359.72564 * 9 7 2 32 32 H 1.08994 * 109.47567 * 299.99923 * 12 10 9 33 33 H 1.08991 * 109.47054 * 60.00626 * 12 10 9 34 34 H 1.08994 * 109.47099 * 300.00232 * 13 12 10 35 35 H 1.08999 * 109.46647 * 180.02562 * 13 12 10 36 36 H 1.08998 * 109.47319 * 179.97438 * 14 13 12 37 37 H 1.09002 * 109.47185 * 59.99918 * 14 13 12 38 38 H 1.08993 * 109.47008 * 299.99431 * 15 14 13 39 39 H 1.09002 * 109.47065 * 180.02562 * 15 14 13 40 40 H 0.97002 * 119.99681 * 335.00269 * 18 16 10 41 41 H 1.08994 * 110.72736 * 56.59206 * 21 19 18 42 42 H 1.09001 * 110.30581 * 334.34738 * 22 21 19 43 43 H 1.09001 * 110.30713 * 96.50161 * 22 21 19 44 44 H 1.08002 * 119.89528 * 0.03780 * 24 23 22 45 45 H 1.08003 * 120.03624 * 179.97438 * 25 24 23 46 46 H 1.08007 * 120.03322 * 180.02562 * 26 25 24 47 47 H 1.08004 * 119.89648 * 180.02562 * 27 26 25 48 48 H 1.08993 * 110.30921 * 223.89777 * 29 28 23 49 49 H 1.09000 * 110.30020 * 101.74310 * 29 28 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7103 1.3462 0.0006 5 1 1.8915 2.3964 -1.2124 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3880 -0.0068 10 6 2.0580 -3.6568 -0.0134 11 1 2.9686 -3.5536 0.5765 12 6 2.4217 -4.0280 -1.4525 13 6 3.1873 -5.3528 -1.4594 14 6 2.3106 -6.4516 -0.8553 15 6 1.9467 -6.0802 0.5837 16 6 1.1807 -4.7552 0.5904 17 1 0.2700 -4.8584 0.0004 18 7 0.8323 -4.3998 1.9682 19 6 -0.2856 -4.8995 2.5311 20 8 -1.0032 -5.6440 1.8970 21 6 -0.6443 -4.5334 3.9482 22 6 0.3774 -5.1241 4.9428 23 6 -0.4311 -5.4960 6.1673 24 6 -0.0243 -5.7653 7.4635 25 6 -0.9552 -6.0885 8.4310 26 6 -2.2978 -6.1431 8.1057 27 6 -2.7055 -5.8739 6.8140 28 6 -1.7732 -5.5514 5.8419 29 6 -1.9586 -5.2199 4.3766 30 1 -0.4850 0.8401 0.0004 31 1 0.3555 -2.3880 -0.0068 32 1 1.5111 -4.1311 -2.0425 33 1 3.0467 -3.2455 -1.8827 34 1 4.0980 -5.2492 -0.8696 35 1 3.4468 -5.6170 -2.4846 36 1 2.8557 -7.3954 -0.8606 37 1 1.3998 -6.5551 -1.4451 38 1 2.8574 -5.9768 1.1735 39 1 1.3225 -6.8633 1.0142 40 1 1.4063 -3.8047 2.4755 41 1 -0.7180 -3.4518 4.0604 42 1 0.8500 -6.0099 4.5183 43 1 1.1305 -4.3788 5.1989 44 1 1.0243 -5.7222 7.7185 45 1 -0.6348 -6.2984 9.4408 46 1 -3.0273 -6.3953 8.8612 47 1 -3.7545 -5.9164 6.5607 48 1 -2.8006 -4.5401 4.2461 49 1 -2.1144 -6.1313 3.7994 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085342866.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:14:32 Heat of formation + Delta-G solvation = -24.238984 kcal Electronic energy + Delta-G solvation = -28126.189405 eV Core-core repulsion = 24437.711125 eV Total energy + Delta-G solvation = -3688.478280 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 328.189 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.58513 -39.37119 -37.85443 -35.38503 -34.05619 -33.73326 -31.51727 -31.15970 -29.95648 -28.82772 -27.63583 -27.26649 -23.92609 -23.64948 -22.05156 -21.26863 -21.06146 -20.91942 -19.91371 -19.21711 -17.31745 -16.96390 -16.29295 -16.07711 -15.71902 -15.13771 -14.94044 -14.48034 -14.31867 -14.01584 -13.68418 -13.51713 -13.35914 -13.28138 -12.97484 -12.93862 -12.80779 -12.68106 -12.32760 -12.13855 -11.95719 -11.33718 -11.21603 -11.16002 -11.09405 -10.94866 -10.88606 -10.84267 -10.76324 -10.56469 -10.33113 -10.15488 -9.76995 -9.65772 -9.44573 -8.94442 -8.91359 -8.59315 -8.56196 -7.00845 -5.80550 -3.10170 1.24515 1.28090 2.94461 3.39238 3.45248 3.47614 3.50682 3.64901 4.25960 4.48763 4.53570 4.86621 4.89065 4.92848 4.97016 5.05870 5.13796 5.16188 5.27682 5.39347 5.43813 5.50767 5.51269 5.54217 5.66930 5.69902 5.71662 5.78726 5.81987 5.89023 5.95184 5.97319 5.99964 6.05963 6.11134 6.17266 6.31961 6.32900 6.38385 6.45017 6.47718 6.51126 6.56736 6.57709 6.85513 6.88764 6.90920 7.08441 7.65718 7.93083 8.36624 8.59114 9.48601 10.05058 10.40326 11.41413 Molecular weight = 328.19amu Principal moments of inertia in cm(-1) A = 0.010714 B = 0.003373 C = 0.002792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2612.791187 B = 8299.701069 C =10027.420360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C -0.011 4.011 3 Si 0.904 3.096 4 H -0.281 1.281 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.240 4.240 8 H 0.070 0.930 9 N -0.722 5.722 10 C 0.173 3.827 11 H 0.050 0.950 12 C -0.133 4.133 13 C -0.119 4.119 14 C -0.114 4.114 15 C -0.123 4.123 16 C 0.140 3.860 17 H 0.084 0.916 18 N -0.704 5.704 19 C 0.526 3.474 20 O -0.549 6.549 21 C -0.111 4.111 22 C -0.070 4.070 23 C -0.096 4.096 24 C -0.106 4.106 25 C -0.125 4.125 26 C -0.122 4.122 27 C -0.109 4.109 28 C -0.088 4.088 29 C -0.069 4.069 30 H 0.254 0.746 31 H 0.385 0.615 32 H 0.057 0.943 33 H 0.065 0.935 34 H 0.057 0.943 35 H 0.054 0.946 36 H 0.057 0.943 37 H 0.061 0.939 38 H 0.060 0.940 39 H 0.061 0.939 40 H 0.403 0.597 41 H 0.110 0.890 42 H 0.084 0.916 43 H 0.084 0.916 44 H 0.119 0.881 45 H 0.121 0.879 46 H 0.122 0.878 47 H 0.120 0.880 48 H 0.080 0.920 49 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.040 -14.197 12.068 18.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.207 4.207 3 Si 0.735 3.265 4 H -0.206 1.206 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.371 4.371 8 H 0.088 0.912 9 N -0.362 5.362 10 C 0.063 3.937 11 H 0.068 0.932 12 C -0.174 4.174 13 C -0.157 4.157 14 C -0.152 4.152 15 C -0.162 4.162 16 C 0.035 3.965 17 H 0.102 0.898 18 N -0.353 5.353 19 C 0.311 3.689 20 O -0.427 6.427 21 C -0.132 4.132 22 C -0.107 4.107 23 C -0.096 4.096 24 C -0.124 4.124 25 C -0.143 4.143 26 C -0.140 4.140 27 C -0.127 4.127 28 C -0.088 4.088 29 C -0.106 4.106 30 H 0.064 0.936 31 H 0.219 0.781 32 H 0.075 0.925 33 H 0.084 0.916 34 H 0.076 0.924 35 H 0.073 0.927 36 H 0.076 0.924 37 H 0.080 0.920 38 H 0.079 0.921 39 H 0.080 0.920 40 H 0.238 0.762 41 H 0.128 0.872 42 H 0.102 0.898 43 H 0.102 0.898 44 H 0.138 0.862 45 H 0.139 0.861 46 H 0.140 0.860 47 H 0.138 0.862 48 H 0.098 0.902 49 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 0.651 -14.552 11.614 18.630 hybrid contribution 0.395 1.390 0.220 1.462 sum 1.047 -13.161 11.834 17.730 Atomic orbital electron populations 1.69680 1.05075 1.25522 1.57395 1.24734 0.95441 0.97607 1.02931 0.86171 0.78782 0.84342 0.77183 1.20596 1.21930 1.21940 1.19241 0.90920 0.83998 1.42943 0.91176 1.42423 1.05814 0.99487 1.88514 1.20458 0.93906 0.85780 0.93576 0.93204 1.22223 0.99937 0.95529 0.99740 1.21581 0.98512 0.95682 0.99974 1.21470 0.99902 0.97992 0.95822 1.21873 0.99948 0.97303 0.97112 1.21309 0.98983 0.93978 0.82231 0.89831 1.45882 1.25115 1.49174 1.15094 1.20154 0.80672 0.80023 0.88020 1.90657 1.50870 1.37060 1.64084 1.21985 0.96437 1.02593 0.92214 1.20967 0.96965 1.01248 0.91505 1.20543 0.94923 0.99794 0.94306 1.20613 0.99659 1.00242 0.91889 1.21003 0.93234 1.00994 0.99097 1.21020 0.96019 1.00740 0.96177 1.20635 0.99167 1.00355 0.92516 1.20673 0.93859 0.98635 0.95663 1.20949 0.96799 1.02023 0.90803 0.93562 0.78140 0.92469 0.91632 0.92406 0.92707 0.92433 0.91989 0.92078 0.92003 0.76207 0.87159 0.89777 0.89753 0.86248 0.86052 0.86044 0.86191 0.90156 0.88245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.31 13.06 55.49 0.72 -26.58 16 2 C -0.01 -0.30 5.50 -17.43 -0.10 -0.39 16 3 Si 0.90 21.74 29.55 -169.99 -5.02 16.72 16 4 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 5 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 6 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 7 C -0.24 -6.28 9.93 -15.06 -0.15 -6.43 16 8 H 0.07 1.79 7.83 -52.49 -0.41 1.38 16 9 N -0.72 -16.94 4.95 -53.42 -0.26 -17.20 16 10 C 0.17 3.19 2.29 -67.93 -0.16 3.04 16 11 H 0.05 0.92 8.08 -51.93 -0.42 0.50 16 12 C -0.13 -2.28 5.50 -26.72 -0.15 -2.43 16 13 C -0.12 -1.61 5.92 -26.73 -0.16 -1.77 16 14 C -0.11 -1.46 5.92 -26.73 -0.16 -1.62 16 15 C -0.12 -1.71 5.50 -26.70 -0.15 -1.86 16 16 C 0.14 2.33 1.98 -67.91 -0.13 2.19 16 17 H 0.08 1.61 7.58 -51.93 -0.39 1.21 16 18 N -0.70 -11.05 4.91 -53.78 -0.26 -11.32 16 19 C 0.53 8.45 7.01 -10.99 -0.08 8.38 16 20 O -0.55 -10.50 15.17 5.55 0.08 -10.41 16 21 C -0.11 -1.47 3.47 -90.37 -0.31 -1.78 16 22 C -0.07 -0.78 6.31 -26.85 -0.17 -0.95 16 23 C -0.10 -1.12 6.14 -104.21 -0.64 -1.76 16 24 C -0.11 -1.10 10.04 -39.54 -0.40 -1.49 16 25 C -0.13 -1.19 10.05 -39.63 -0.40 -1.59 16 26 C -0.12 -1.17 10.04 -39.63 -0.40 -1.57 16 27 C -0.11 -1.18 10.04 -39.54 -0.40 -1.57 16 28 C -0.09 -1.08 6.14 -104.21 -0.64 -1.72 16 29 C -0.07 -0.89 6.10 -26.85 -0.16 -1.05 16 30 H 0.25 7.30 8.31 -40.82 -0.34 6.96 16 31 H 0.38 10.01 7.80 -40.82 -0.32 9.69 16 32 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 33 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 34 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 36 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 39 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 40 H 0.40 5.99 8.60 -40.82 -0.35 5.64 16 41 H 0.11 1.46 8.14 -51.93 -0.42 1.03 16 42 H 0.08 0.94 7.89 -51.93 -0.41 0.53 16 43 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 44 H 0.12 1.01 8.06 -52.49 -0.42 0.58 16 45 H 0.12 0.86 8.06 -52.48 -0.42 0.44 16 46 H 0.12 0.88 8.06 -52.48 -0.42 0.45 16 47 H 0.12 1.10 8.06 -52.48 -0.42 0.68 16 48 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 49 H 0.10 1.42 6.98 -51.93 -0.36 1.05 16 LS Contribution 391.70 15.07 5.90 5.90 Total: -1.00 -30.55 391.70 -11.72 -42.27 By element: Atomic # 1 Polarization: 23.14 SS G_CDS: -8.14 Total: 15.00 kcal Atomic # 6 Polarization: -9.64 SS G_CDS: -4.74 Total: -14.38 kcal Atomic # 7 Polarization: -55.30 SS G_CDS: 0.20 Total: -55.10 kcal Atomic # 8 Polarization: -10.50 SS G_CDS: 0.08 Total: -10.41 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -30.55 -11.72 -42.27 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085342866.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.031 kcal (2) G-P(sol) polarization free energy of solvation -30.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.270 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds