Wall clock time and date at job start Tue Mar 31 2020 16:14:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86803 * 120.00251 * 2 1 4 4 H 1.48508 * 109.46872 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47141 * 300.00189 * 3 2 1 6 6 H 1.48498 * 109.47018 * 60.00235 * 3 2 1 7 7 C 1.38817 * 119.99888 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99823 * 179.97438 * 7 2 1 9 9 N 1.36931 * 119.99680 * 0.27479 * 7 2 1 10 10 C 1.46505 * 119.99788 * 179.72358 * 9 7 2 11 11 H 1.08994 * 109.47052 * 35.00019 * 10 9 7 12 12 C 1.53006 * 109.46692 * 274.99780 * 10 9 7 13 13 C 1.53012 * 109.46635 * 179.97438 * 12 10 9 14 14 C 1.52999 * 109.46981 * 60.00016 * 13 12 10 15 15 C 1.53001 * 109.47259 * 300.00142 * 14 13 12 16 16 C 1.52995 * 109.47024 * 155.00126 * 10 9 7 17 17 H 1.09002 * 109.47452 * 59.99785 * 16 10 9 18 18 N 1.46495 * 109.47436 * 300.00014 * 16 10 9 19 19 C 1.34770 * 120.00960 * 155.00040 * 18 16 10 20 20 O 1.21290 * 119.99674 * 0.02562 * 19 18 16 21 21 C 1.50701 * 120.00782 * 180.02562 * 19 18 16 22 22 C 1.54340 * 110.81986 * 292.97182 * 21 19 18 23 23 C 1.51372 * 105.16944 * 215.42432 * 22 21 19 24 24 C 1.38496 * 130.38751 * 197.16212 * 23 22 21 25 25 C 1.38102 * 120.21247 * 180.02562 * 24 23 22 26 26 C 1.38250 * 119.93370 * 359.97438 * 25 24 23 27 27 C 1.38096 * 119.93990 * 359.97438 * 26 25 24 28 28 C 1.38209 * 109.75910 * 17.19634 * 23 22 21 29 29 C 1.51372 * 109.76083 * 359.97438 * 28 23 22 30 30 H 0.97005 * 119.99715 * 359.97438 * 1 2 3 31 31 H 0.97000 * 120.00420 * 359.72564 * 9 7 2 32 32 H 1.08994 * 109.47567 * 299.99923 * 12 10 9 33 33 H 1.08991 * 109.47054 * 60.00626 * 12 10 9 34 34 H 1.08994 * 109.47099 * 300.00232 * 13 12 10 35 35 H 1.08999 * 109.46647 * 180.02562 * 13 12 10 36 36 H 1.08998 * 109.47319 * 179.97438 * 14 13 12 37 37 H 1.09002 * 109.47185 * 59.99918 * 14 13 12 38 38 H 1.08993 * 109.47008 * 299.99431 * 15 14 13 39 39 H 1.09002 * 109.47065 * 180.02562 * 15 14 13 40 40 H 0.97002 * 119.99681 * 335.00269 * 18 16 10 41 41 H 1.08994 * 110.72736 * 56.59206 * 21 19 18 42 42 H 1.09001 * 110.30581 * 334.34738 * 22 21 19 43 43 H 1.09001 * 110.30713 * 96.50161 * 22 21 19 44 44 H 1.08002 * 119.89528 * 0.03780 * 24 23 22 45 45 H 1.08003 * 120.03624 * 179.97438 * 25 24 23 46 46 H 1.08007 * 120.03322 * 180.02562 * 26 25 24 47 47 H 1.08004 * 119.89648 * 180.02562 * 27 26 25 48 48 H 1.08993 * 110.30921 * 223.89777 * 29 28 23 49 49 H 1.09000 * 110.30020 * 101.74310 * 29 28 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7103 1.3462 0.0006 5 1 1.8915 2.3964 -1.2124 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3880 -0.0068 10 6 2.0580 -3.6568 -0.0134 11 1 2.9686 -3.5536 0.5765 12 6 2.4217 -4.0280 -1.4525 13 6 3.1873 -5.3528 -1.4594 14 6 2.3106 -6.4516 -0.8553 15 6 1.9467 -6.0802 0.5837 16 6 1.1807 -4.7552 0.5904 17 1 0.2700 -4.8584 0.0004 18 7 0.8323 -4.3998 1.9682 19 6 -0.2856 -4.8995 2.5311 20 8 -1.0032 -5.6440 1.8970 21 6 -0.6443 -4.5334 3.9482 22 6 0.3774 -5.1241 4.9428 23 6 -0.4311 -5.4960 6.1673 24 6 -0.0243 -5.7653 7.4635 25 6 -0.9552 -6.0885 8.4310 26 6 -2.2978 -6.1431 8.1057 27 6 -2.7055 -5.8739 6.8140 28 6 -1.7732 -5.5514 5.8419 29 6 -1.9586 -5.2199 4.3766 30 1 -0.4850 0.8401 0.0004 31 1 0.3555 -2.3880 -0.0068 32 1 1.5111 -4.1311 -2.0425 33 1 3.0467 -3.2455 -1.8827 34 1 4.0980 -5.2492 -0.8696 35 1 3.4468 -5.6170 -2.4846 36 1 2.8557 -7.3954 -0.8606 37 1 1.3998 -6.5551 -1.4451 38 1 2.8574 -5.9768 1.1735 39 1 1.3225 -6.8633 1.0142 40 1 1.4063 -3.8047 2.4755 41 1 -0.7180 -3.4518 4.0604 42 1 0.8500 -6.0099 4.5183 43 1 1.1305 -4.3788 5.1989 44 1 1.0243 -5.7222 7.7185 45 1 -0.6348 -6.2984 9.4408 46 1 -3.0273 -6.3953 8.8612 47 1 -3.7545 -5.9164 6.5607 48 1 -2.8006 -4.5401 4.2461 49 1 -2.1144 -6.1313 3.7994 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085342866.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:14:31 Heat of formation + Delta-G solvation = -40.735714 kcal Electronic energy + Delta-G solvation = -28126.904757 eV Core-core repulsion = 24437.711125 eV Total energy + Delta-G solvation = -3689.193632 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 328.189 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.66149 -40.51215 -39.15762 -36.35051 -35.80743 -35.10045 -32.98993 -32.33010 -31.07733 -30.03937 -29.09437 -28.20383 -25.67184 -24.84833 -23.19013 -22.51195 -22.19878 -21.78668 -21.20087 -20.51214 -19.14883 -18.26940 -17.42542 -17.11675 -16.76560 -16.67464 -15.95688 -15.79580 -15.61864 -15.34111 -15.24451 -14.73697 -14.61227 -14.32479 -14.14993 -14.03840 -13.90125 -13.70515 -13.61718 -13.53710 -13.14378 -12.91164 -12.84961 -12.23621 -12.20209 -12.17795 -12.15405 -12.09095 -12.00333 -11.99913 -11.67277 -11.63338 -11.43270 -11.11233 -10.98918 -10.69275 -9.92754 -9.70737 -9.42565 -8.98684 -7.90783 -5.19447 0.43995 0.48754 1.48351 1.49498 1.58610 1.64565 2.24704 2.57387 2.84964 3.31583 3.42563 3.49952 3.70384 3.79821 3.89493 4.02037 4.10927 4.16266 4.18671 4.26825 4.30849 4.33474 4.35285 4.44788 4.53436 4.60229 4.64569 4.67359 4.70874 4.73091 4.85383 4.87477 4.96185 5.01421 5.06394 5.17017 5.18639 5.24136 5.24947 5.30301 5.31983 5.47670 5.54196 5.55481 5.58682 5.62500 5.70066 5.73649 6.12556 6.29174 6.62623 7.28867 7.36052 8.09940 8.34033 9.32451 Molecular weight = 328.19amu Principal moments of inertia in cm(-1) A = 0.010714 B = 0.003373 C = 0.002792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2612.791187 B = 8299.701069 C =10027.420360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.970 5.970 2 C -0.074 4.074 3 Si 0.967 3.033 4 H -0.263 1.263 5 H -0.301 1.301 6 H -0.296 1.296 7 C -0.228 4.228 8 H 0.080 0.920 9 N -0.732 5.732 10 C 0.173 3.827 11 H 0.060 0.940 12 C -0.129 4.129 13 C -0.109 4.109 14 C -0.111 4.111 15 C -0.114 4.114 16 C 0.147 3.853 17 H 0.050 0.950 18 N -0.701 5.701 19 C 0.524 3.476 20 O -0.584 6.584 21 C -0.107 4.107 22 C -0.060 4.060 23 C -0.110 4.110 24 C -0.113 4.113 25 C -0.125 4.125 26 C -0.124 4.124 27 C -0.121 4.121 28 C -0.111 4.111 29 C -0.066 4.066 30 H 0.247 0.753 31 H 0.368 0.632 32 H 0.039 0.961 33 H 0.050 0.950 34 H 0.073 0.927 35 H 0.072 0.928 36 H 0.087 0.913 37 H 0.051 0.949 38 H 0.080 0.920 39 H 0.056 0.944 40 H 0.409 0.591 41 H 0.109 0.891 42 H 0.084 0.916 43 H 0.101 0.899 44 H 0.140 0.860 45 H 0.150 0.850 46 H 0.147 0.853 47 H 0.129 0.871 48 H 0.076 0.924 49 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.376 -15.389 13.864 20.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.621 5.621 2 C -0.266 4.266 3 Si 0.797 3.203 4 H -0.188 1.188 5 H -0.229 1.229 6 H -0.224 1.224 7 C -0.360 4.360 8 H 0.097 0.903 9 N -0.371 5.371 10 C 0.064 3.936 11 H 0.078 0.922 12 C -0.170 4.170 13 C -0.147 4.147 14 C -0.149 4.149 15 C -0.153 4.153 16 C 0.042 3.958 17 H 0.069 0.931 18 N -0.349 5.349 19 C 0.311 3.689 20 O -0.464 6.464 21 C -0.129 4.129 22 C -0.097 4.097 23 C -0.110 4.110 24 C -0.131 4.131 25 C -0.142 4.142 26 C -0.141 4.141 27 C -0.139 4.139 28 C -0.111 4.111 29 C -0.103 4.103 30 H 0.056 0.944 31 H 0.199 0.801 32 H 0.058 0.942 33 H 0.068 0.932 34 H 0.092 0.908 35 H 0.090 0.910 36 H 0.105 0.895 37 H 0.070 0.930 38 H 0.099 0.901 39 H 0.075 0.925 40 H 0.244 0.756 41 H 0.127 0.873 42 H 0.102 0.898 43 H 0.119 0.881 44 H 0.157 0.843 45 H 0.167 0.833 46 H 0.165 0.835 47 H 0.147 0.853 48 H 0.094 0.906 49 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 3.052 -15.776 13.414 20.931 hybrid contribution -0.348 1.684 -0.327 1.750 sum 2.704 -14.092 13.087 19.421 Atomic orbital electron populations 1.69845 1.06666 1.25610 1.59946 1.25473 0.96133 1.00813 1.04220 0.85163 0.78470 0.80402 0.76257 1.18759 1.22895 1.22393 1.19610 0.91378 0.84832 1.40159 0.90253 1.42597 1.05164 1.00780 1.88517 1.20664 0.93888 0.84251 0.94758 0.92233 1.22101 0.99439 0.97505 0.97937 1.21513 0.98391 0.93287 1.01546 1.21478 0.99773 0.99067 0.94573 1.21804 1.00062 0.95013 0.98389 1.21167 0.97549 0.94975 0.82128 0.93124 1.45875 1.25198 1.49074 1.14743 1.20632 0.80088 0.79283 0.88926 1.90636 1.51873 1.38740 1.65191 1.21940 0.97537 1.02535 0.90843 1.20902 0.96531 1.01519 0.90797 1.20667 0.94633 1.00630 0.95082 1.20916 1.01054 0.99770 0.91317 1.21407 0.92995 0.99620 1.00221 1.21377 0.96944 0.99752 0.96051 1.20889 0.99594 1.00401 0.93022 1.20683 0.94827 1.00427 0.95137 1.20844 0.96588 1.01038 0.91834 0.94386 0.80061 0.94245 0.93167 0.90849 0.90959 0.89488 0.93013 0.90120 0.92545 0.75559 0.87269 0.89754 0.88082 0.84262 0.83253 0.83496 0.85280 0.90577 0.90104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.67 13.06 21.65 0.28 -58.39 16 2 C -0.07 -4.13 5.50 84.86 0.47 -3.66 16 3 Si 0.97 45.06 29.55 68.60 2.03 47.09 16 4 H -0.26 -11.37 7.11 99.48 0.71 -10.66 16 5 H -0.30 -14.37 7.11 99.48 0.71 -13.66 16 6 H -0.30 -13.90 7.11 99.48 0.71 -13.19 16 7 C -0.23 -11.93 9.93 84.04 0.83 -11.09 16 8 H 0.08 3.95 7.83 -2.91 -0.02 3.93 16 9 N -0.73 -34.95 4.95 -322.93 -1.60 -36.55 16 10 C 0.17 6.32 2.29 44.99 0.10 6.43 16 11 H 0.06 2.09 8.08 -2.39 -0.02 2.07 16 12 C -0.13 -4.35 5.50 30.60 0.17 -4.18 16 13 C -0.11 -2.67 5.92 30.60 0.18 -2.49 16 14 C -0.11 -2.59 5.92 30.59 0.18 -2.41 16 15 C -0.11 -2.98 5.50 30.61 0.17 -2.81 16 16 C 0.15 4.92 1.98 45.01 0.09 5.01 16 17 H 0.05 2.04 7.58 -2.39 -0.02 2.02 16 18 N -0.70 -22.27 4.91 -442.47 -2.17 -24.44 16 19 C 0.52 17.43 7.01 87.66 0.61 18.04 16 20 O -0.58 -23.46 15.17 -3.06 -0.05 -23.50 16 21 C -0.11 -2.92 3.47 -10.63 -0.04 -2.95 16 22 C -0.06 -1.31 6.31 30.52 0.19 -1.12 16 23 C -0.11 -2.47 6.14 -19.60 -0.12 -2.59 16 24 C -0.11 -2.08 10.04 22.30 0.22 -1.86 16 25 C -0.12 -2.01 10.05 22.24 0.22 -1.79 16 26 C -0.12 -2.10 10.04 22.24 0.22 -1.87 16 27 C -0.12 -2.53 10.04 22.30 0.22 -2.31 16 28 C -0.11 -2.70 6.14 -19.59 -0.12 -2.82 16 29 C -0.07 -1.79 6.10 30.52 0.19 -1.61 16 30 H 0.25 14.67 8.31 -92.70 -0.77 13.90 16 31 H 0.37 19.93 7.80 -92.71 -0.72 19.21 16 32 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 33 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 34 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 35 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 36 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 37 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 38 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 39 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 40 H 0.41 12.04 8.60 -92.71 -0.80 11.25 16 41 H 0.11 2.98 8.14 -2.39 -0.02 2.96 16 42 H 0.08 1.82 7.89 -2.39 -0.02 1.80 16 43 H 0.10 1.83 8.14 -2.39 -0.02 1.81 16 44 H 0.14 1.94 8.06 -2.91 -0.02 1.91 16 45 H 0.15 1.53 8.06 -2.91 -0.02 1.51 16 46 H 0.15 1.68 8.06 -2.91 -0.02 1.65 16 47 H 0.13 2.32 8.06 -2.91 -0.02 2.30 16 48 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 49 H 0.08 2.48 6.98 -2.39 -0.02 2.46 16 Total: -1.00 -67.69 391.70 1.72 -65.97 By element: Atomic # 1 Polarization: 46.49 SS G_CDS: -0.57 Total: 45.91 kcal Atomic # 6 Polarization: -19.89 SS G_CDS: 3.80 Total: -16.09 kcal Atomic # 7 Polarization: -115.89 SS G_CDS: -3.49 Total: -119.38 kcal Atomic # 8 Polarization: -23.46 SS G_CDS: -0.05 Total: -23.50 kcal Atomic # 14 Polarization: 45.06 SS G_CDS: 2.03 Total: 47.09 kcal Total: -67.69 1.72 -65.97 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085342866.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.231 kcal (2) G-P(sol) polarization free energy of solvation -67.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.967 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds