Wall clock time and date at job start Tue Mar 31 2020 16:08:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86800 * 119.99844 * 2 1 4 4 H 1.48493 * 109.47370 * 239.99577 * 3 2 1 5 5 H 1.48499 * 109.47061 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47133 * 119.99599 * 3 2 1 7 7 C 1.38810 * 120.00105 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00232 * 180.02562 * 7 2 1 9 9 N 1.36943 * 119.99831 * 359.97438 * 7 2 1 10 10 C 1.46497 * 119.99553 * 179.97438 * 9 7 2 11 11 H 1.08997 * 109.47266 * 35.00459 * 10 9 7 12 12 C 1.52998 * 109.47358 * 275.00236 * 10 9 7 13 13 C 1.53001 * 109.47135 * 180.02562 * 12 10 9 14 14 C 1.52999 * 109.46970 * 59.99975 * 13 12 10 15 15 C 1.52998 * 109.47212 * 299.99978 * 14 13 12 16 16 C 1.52994 * 109.47353 * 60.00195 * 15 14 13 17 17 H 1.09001 * 109.47463 * 59.99553 * 16 15 14 18 18 N 1.46492 * 109.47336 * 179.97438 * 16 15 14 19 19 C 1.34778 * 120.00439 * 275.00003 * 18 16 15 20 20 O 1.21552 * 119.99421 * 359.97438 * 19 18 16 21 21 C 1.47844 * 120.00480 * 180.02562 * 19 18 16 22 22 C 1.39495 * 120.04053 * 359.97438 * 21 19 18 23 23 C 1.37932 * 119.76880 * 179.97438 * 22 21 19 24 24 C 1.38257 * 120.09262 * 359.97438 * 23 22 21 25 25 C 1.38619 * 120.53287 * 359.97438 * 24 23 22 26 26 C 1.37975 * 119.92669 * 0.02562 * 25 24 23 27 27 C 1.51354 * 109.82799 * 180.02562 * 26 25 24 28 28 C 1.54605 * 105.16856 * 17.18068 * 27 26 25 29 29 C 1.51392 * 130.31002 * 180.02562 * 25 24 23 30 30 H 0.97003 * 120.00255 * 0.02562 * 1 2 3 31 31 H 0.96998 * 120.00044 * 0.02562 * 9 7 2 32 32 H 1.08998 * 109.47092 * 60.00051 * 12 10 9 33 33 H 1.08997 * 109.47115 * 300.00317 * 12 10 9 34 34 H 1.08997 * 109.47143 * 300.00012 * 13 12 10 35 35 H 1.09000 * 109.46791 * 179.97438 * 13 12 10 36 36 H 1.09010 * 109.46989 * 179.97438 * 14 13 12 37 37 H 1.08997 * 109.47157 * 60.00046 * 14 13 12 38 38 H 1.08997 * 109.47115 * 300.00093 * 15 14 13 39 39 H 1.08998 * 109.47092 * 180.02562 * 15 14 13 40 40 H 0.97005 * 119.99760 * 95.00035 * 18 16 15 41 41 H 1.08003 * 120.11503 * 359.97438 * 22 21 19 42 42 H 1.07995 * 119.95262 * 180.02562 * 23 22 21 43 43 H 1.08000 * 119.73176 * 180.02562 * 24 23 22 44 44 H 1.08997 * 110.30550 * 136.08388 * 27 26 25 45 45 H 1.08999 * 110.30567 * 258.14733 * 27 26 25 46 46 H 1.09002 * 110.91441 * 215.50133 * 28 27 26 47 47 H 1.08997 * 110.86009 * 91.84891 * 28 27 26 48 48 H 1.09002 * 110.30531 * 281.74123 * 29 25 24 49 49 H 1.08997 * 110.30242 * 43.79754 * 29 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1040 1.6965 -1.2124 5 1 1.2851 2.7464 -0.0006 6 1 3.1038 1.6965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0010 9 7 1.3255 -2.3881 0.0016 10 6 2.0581 -3.6567 0.0016 11 1 2.9692 -3.5502 0.5903 12 6 2.4210 -4.0362 -1.4355 13 6 3.1855 -5.3615 -1.4355 14 6 2.3083 -6.4563 -0.8249 15 6 1.9454 -6.0768 0.6122 16 6 1.1809 -4.7516 0.6122 17 1 0.2698 -4.8576 0.0233 18 7 0.8329 -4.3886 1.9881 19 6 -0.2851 -4.8849 2.5539 20 8 -1.0050 -5.6335 1.9222 21 6 -0.6366 -4.5181 3.9423 22 6 0.1886 -3.6588 4.6678 23 6 -0.1449 -3.3199 5.9626 24 6 -1.2936 -3.8300 6.5387 25 6 -2.1201 -4.6838 5.8249 26 6 -1.7973 -5.0303 4.5289 27 6 -2.8488 -5.9648 3.9704 28 6 -4.0697 -5.8051 4.9053 29 6 -3.4118 -5.3617 6.2295 30 1 -0.4851 0.8401 -0.0004 31 1 0.3556 -2.3881 0.0016 32 1 3.0455 -3.2560 -1.8706 33 1 1.5099 -4.1427 -2.0242 34 1 4.0966 -5.2554 -0.8466 35 1 3.4436 -5.6320 -2.4593 36 1 2.8528 -7.4006 -0.8253 37 1 1.3972 -6.5624 -1.4138 38 1 2.8565 -5.9707 1.2010 39 1 1.3208 -6.8570 1.0473 40 1 1.4073 -3.7909 2.4921 41 1 1.0856 -3.2602 4.2173 42 1 0.4916 -2.6545 6.5268 43 1 -1.5494 -3.5604 7.5527 44 1 -3.1112 -5.6741 2.9532 45 1 -2.4886 -6.9934 3.9882 46 1 -4.5908 -6.7543 5.0304 47 1 -4.7464 -5.0364 4.5321 48 1 -3.2038 -6.2280 6.8575 49 1 -4.0584 -4.6599 6.7562 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085437398.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:08:23 Heat of formation + Delta-G solvation = -21.696934 kcal Electronic energy + Delta-G solvation = -28541.418335 eV Core-core repulsion = 24853.050287 eV Total energy + Delta-G solvation = -3688.368048 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 328.189 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.48039 -39.19523 -37.58242 -35.69022 -34.02871 -33.65534 -31.60005 -31.12830 -29.30498 -28.96878 -27.83459 -27.00292 -23.93091 -23.66213 -22.04825 -21.25998 -21.13394 -20.71411 -19.92245 -19.30246 -17.41131 -16.85736 -16.15728 -15.77070 -15.50160 -15.12246 -14.87825 -14.53369 -14.42311 -14.01744 -13.73885 -13.59097 -13.23469 -13.10008 -12.93987 -12.82312 -12.60724 -12.53491 -12.07794 -12.04574 -11.80517 -11.31456 -11.21188 -11.13385 -11.06478 -10.91481 -10.89741 -10.80681 -10.73536 -10.54321 -10.31963 -10.19235 -9.74462 -9.63106 -9.40367 -8.91593 -8.83831 -8.52593 -8.45314 -6.98747 -5.77784 -3.07780 0.99060 1.38478 3.13469 3.40962 3.46073 3.47368 3.56121 3.98800 4.37125 4.55161 4.56521 4.89824 4.97401 5.00633 5.08044 5.08585 5.16366 5.20167 5.30800 5.45879 5.50728 5.53458 5.56588 5.65936 5.72482 5.73763 5.81579 5.83891 5.90969 5.91116 5.97002 5.99461 6.06347 6.12912 6.17330 6.21601 6.34739 6.37858 6.44589 6.46692 6.49332 6.52558 6.59471 6.61893 6.87416 6.91887 6.93753 7.11127 7.66547 7.96946 8.39208 8.62878 9.50841 10.07569 10.42835 11.44009 Molecular weight = 328.19amu Principal moments of inertia in cm(-1) A = 0.009769 B = 0.004157 C = 0.003227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2865.386046 B = 6734.374262 C = 8675.983406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C -0.009 4.009 3 Si 0.904 3.096 4 H -0.286 1.286 5 H -0.292 1.292 6 H -0.286 1.286 7 C -0.242 4.242 8 H 0.069 0.931 9 N -0.722 5.722 10 C 0.173 3.827 11 H 0.050 0.950 12 C -0.133 4.133 13 C -0.119 4.119 14 C -0.113 4.113 15 C -0.123 4.123 16 C 0.142 3.858 17 H 0.084 0.916 18 N -0.703 5.703 19 C 0.557 3.443 20 O -0.545 6.545 21 C -0.117 4.117 22 C -0.080 4.080 23 C -0.129 4.129 24 C -0.087 4.087 25 C -0.115 4.115 26 C -0.034 4.034 27 C -0.079 4.079 28 C -0.124 4.124 29 C -0.079 4.079 30 H 0.256 0.744 31 H 0.385 0.615 32 H 0.065 0.935 33 H 0.057 0.943 34 H 0.057 0.943 35 H 0.054 0.946 36 H 0.057 0.943 37 H 0.062 0.938 38 H 0.060 0.940 39 H 0.062 0.938 40 H 0.401 0.599 41 H 0.131 0.869 42 H 0.129 0.871 43 H 0.121 0.879 44 H 0.090 0.910 45 H 0.081 0.919 46 H 0.075 0.925 47 H 0.072 0.928 48 H 0.078 0.922 49 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.007 -13.197 11.070 17.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.206 4.206 3 Si 0.735 3.265 4 H -0.213 1.213 5 H -0.218 1.218 6 H -0.213 1.213 7 C -0.374 4.374 8 H 0.087 0.913 9 N -0.362 5.362 10 C 0.062 3.938 11 H 0.068 0.932 12 C -0.174 4.174 13 C -0.157 4.157 14 C -0.151 4.151 15 C -0.163 4.163 16 C 0.036 3.964 17 H 0.103 0.897 18 N -0.352 5.352 19 C 0.345 3.655 20 O -0.424 6.424 21 C -0.120 4.120 22 C -0.099 4.099 23 C -0.147 4.147 24 C -0.105 4.105 25 C -0.115 4.115 26 C -0.035 4.035 27 C -0.116 4.116 28 C -0.161 4.161 29 C -0.116 4.116 30 H 0.065 0.935 31 H 0.219 0.781 32 H 0.084 0.916 33 H 0.075 0.925 34 H 0.076 0.924 35 H 0.073 0.927 36 H 0.076 0.924 37 H 0.080 0.920 38 H 0.079 0.921 39 H 0.081 0.919 40 H 0.237 0.763 41 H 0.148 0.852 42 H 0.147 0.853 43 H 0.139 0.861 44 H 0.108 0.892 45 H 0.100 0.900 46 H 0.094 0.906 47 H 0.091 0.909 48 H 0.096 0.904 49 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -1.410 -13.548 10.613 17.268 hybrid contribution 0.596 1.519 0.181 1.642 sum -0.813 -12.029 10.795 16.183 Atomic orbital electron populations 1.69664 1.05082 1.25753 1.57132 1.24728 0.95412 0.97571 1.02861 0.86321 0.78537 0.83805 0.77801 1.21318 1.21763 1.21319 1.19152 0.90852 0.84028 1.43321 0.91277 1.42413 1.05821 0.99449 1.88546 1.20462 0.93885 0.85812 0.93595 0.93240 1.22217 0.99952 0.95509 0.99701 1.21581 0.98520 0.95703 0.99942 1.21470 0.99901 0.97985 0.95789 1.21867 0.99976 0.97295 0.97122 1.21301 0.99049 0.93973 0.82042 0.89746 1.45837 1.25020 1.48988 1.15339 1.18223 0.80901 0.80359 0.86036 1.90703 1.50684 1.36914 1.64073 1.19630 0.96582 1.01300 0.94519 1.21307 0.98825 0.95447 0.94321 1.20963 0.97431 1.00893 0.95380 1.20760 0.94010 0.96165 0.99556 1.20584 0.97527 0.98711 0.94663 1.20557 0.93610 0.95380 0.93984 1.21125 0.91935 0.98207 1.00336 1.22412 0.97396 1.01690 0.94638 1.21028 0.92929 0.99457 0.98150 0.93453 0.78107 0.91612 0.92455 0.92407 0.92700 0.92423 0.91970 0.92099 0.91928 0.76303 0.85151 0.85324 0.86106 0.89158 0.90049 0.90599 0.90899 0.90388 0.90822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.74 13.06 55.49 0.72 -27.02 16 2 C -0.01 -0.26 5.50 -17.43 -0.10 -0.35 16 3 Si 0.90 21.96 29.55 -169.99 -5.02 16.93 16 4 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 5 H -0.29 -7.22 7.11 56.52 0.40 -6.81 16 6 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 7 C -0.24 -6.44 9.93 -15.06 -0.15 -6.59 16 8 H 0.07 1.78 7.83 -52.49 -0.41 1.37 16 9 N -0.72 -17.34 4.95 -53.43 -0.26 -17.61 16 10 C 0.17 3.28 2.29 -67.93 -0.16 3.13 16 11 H 0.05 0.94 8.08 -51.93 -0.42 0.52 16 12 C -0.13 -2.31 5.50 -26.73 -0.15 -2.46 16 13 C -0.12 -1.64 5.92 -26.73 -0.16 -1.80 16 14 C -0.11 -1.49 5.92 -26.73 -0.16 -1.65 16 15 C -0.12 -1.79 5.49 -26.74 -0.15 -1.94 16 16 C 0.14 2.45 1.98 -67.93 -0.13 2.32 16 17 H 0.08 1.67 7.57 -51.93 -0.39 1.28 16 18 N -0.70 -12.01 4.86 -54.75 -0.27 -12.27 16 19 C 0.56 10.02 7.74 -12.33 -0.10 9.93 16 20 O -0.54 -10.91 14.36 5.32 0.08 -10.83 16 21 C -0.12 -1.88 5.88 -104.92 -0.62 -2.50 16 22 C -0.08 -1.14 9.54 -39.23 -0.37 -1.51 16 23 C -0.13 -1.57 10.03 -39.69 -0.40 -1.97 16 24 C -0.09 -1.01 10.03 -39.43 -0.40 -1.40 16 25 C -0.11 -1.45 6.13 -104.24 -0.64 -2.09 16 26 C -0.03 -0.51 6.03 -103.82 -0.63 -1.14 16 27 C -0.08 -1.06 5.59 -26.72 -0.15 -1.21 16 28 C -0.12 -1.27 7.10 -25.17 -0.18 -1.45 16 29 C -0.08 -0.77 6.76 -26.83 -0.18 -0.95 16 30 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 31 H 0.39 10.28 7.80 -40.82 -0.32 9.96 16 32 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 33 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 34 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.06 0.66 8.14 -51.92 -0.42 0.23 16 37 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 38 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 40 H 0.40 6.52 6.63 -40.82 -0.27 6.25 16 41 H 0.13 1.72 6.40 -52.48 -0.34 1.38 16 42 H 0.13 1.26 8.06 -52.49 -0.42 0.83 16 43 H 0.12 1.08 8.06 -52.49 -0.42 0.65 16 44 H 0.09 1.40 7.19 -51.93 -0.37 1.02 16 45 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 46 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 47 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 48 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 49 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 387.24 15.07 5.84 5.84 Total: -1.00 -30.97 387.24 -11.72 -42.69 By element: Atomic # 1 Polarization: 23.92 SS G_CDS: -8.00 Total: 15.92 kcal Atomic # 6 Polarization: -8.85 SS G_CDS: -4.80 Total: -13.65 kcal Atomic # 7 Polarization: -57.09 SS G_CDS: 0.19 Total: -56.90 kcal Atomic # 8 Polarization: -10.91 SS G_CDS: 0.08 Total: -10.83 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -30.97 -11.72 -42.69 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085437398.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.993 kcal (2) G-P(sol) polarization free energy of solvation -30.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.690 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds