Wall clock time and date at job start Tue Mar 31 2020 16:08:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86800 * 119.99844 * 2 1 4 4 H 1.48493 * 109.47370 * 239.99577 * 3 2 1 5 5 H 1.48499 * 109.47061 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47133 * 119.99599 * 3 2 1 7 7 C 1.38810 * 120.00105 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00232 * 180.02562 * 7 2 1 9 9 N 1.36943 * 119.99831 * 359.97438 * 7 2 1 10 10 C 1.46497 * 119.99553 * 179.97438 * 9 7 2 11 11 H 1.08997 * 109.47266 * 35.00459 * 10 9 7 12 12 C 1.52998 * 109.47358 * 275.00236 * 10 9 7 13 13 C 1.53001 * 109.47135 * 180.02562 * 12 10 9 14 14 C 1.52999 * 109.46970 * 59.99975 * 13 12 10 15 15 C 1.52998 * 109.47212 * 299.99978 * 14 13 12 16 16 C 1.52994 * 109.47353 * 60.00195 * 15 14 13 17 17 H 1.09001 * 109.47463 * 59.99553 * 16 15 14 18 18 N 1.46492 * 109.47336 * 179.97438 * 16 15 14 19 19 C 1.34778 * 120.00439 * 275.00003 * 18 16 15 20 20 O 1.21552 * 119.99421 * 359.97438 * 19 18 16 21 21 C 1.47844 * 120.00480 * 180.02562 * 19 18 16 22 22 C 1.39495 * 120.04053 * 359.97438 * 21 19 18 23 23 C 1.37932 * 119.76880 * 179.97438 * 22 21 19 24 24 C 1.38257 * 120.09262 * 359.97438 * 23 22 21 25 25 C 1.38619 * 120.53287 * 359.97438 * 24 23 22 26 26 C 1.37975 * 119.92669 * 0.02562 * 25 24 23 27 27 C 1.51354 * 109.82799 * 180.02562 * 26 25 24 28 28 C 1.54605 * 105.16856 * 17.18068 * 27 26 25 29 29 C 1.51392 * 130.31002 * 180.02562 * 25 24 23 30 30 H 0.97003 * 120.00255 * 0.02562 * 1 2 3 31 31 H 0.96998 * 120.00044 * 0.02562 * 9 7 2 32 32 H 1.08998 * 109.47092 * 60.00051 * 12 10 9 33 33 H 1.08997 * 109.47115 * 300.00317 * 12 10 9 34 34 H 1.08997 * 109.47143 * 300.00012 * 13 12 10 35 35 H 1.09000 * 109.46791 * 179.97438 * 13 12 10 36 36 H 1.09010 * 109.46989 * 179.97438 * 14 13 12 37 37 H 1.08997 * 109.47157 * 60.00046 * 14 13 12 38 38 H 1.08997 * 109.47115 * 300.00093 * 15 14 13 39 39 H 1.08998 * 109.47092 * 180.02562 * 15 14 13 40 40 H 0.97005 * 119.99760 * 95.00035 * 18 16 15 41 41 H 1.08003 * 120.11503 * 359.97438 * 22 21 19 42 42 H 1.07995 * 119.95262 * 180.02562 * 23 22 21 43 43 H 1.08000 * 119.73176 * 180.02562 * 24 23 22 44 44 H 1.08997 * 110.30550 * 136.08388 * 27 26 25 45 45 H 1.08999 * 110.30567 * 258.14733 * 27 26 25 46 46 H 1.09002 * 110.91441 * 215.50133 * 28 27 26 47 47 H 1.08997 * 110.86009 * 91.84891 * 28 27 26 48 48 H 1.09002 * 110.30531 * 281.74123 * 29 25 24 49 49 H 1.08997 * 110.30242 * 43.79754 * 29 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1040 1.6965 -1.2124 5 1 1.2851 2.7464 -0.0006 6 1 3.1038 1.6965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0010 9 7 1.3255 -2.3881 0.0016 10 6 2.0581 -3.6567 0.0016 11 1 2.9692 -3.5502 0.5903 12 6 2.4210 -4.0362 -1.4355 13 6 3.1855 -5.3615 -1.4355 14 6 2.3083 -6.4563 -0.8249 15 6 1.9454 -6.0768 0.6122 16 6 1.1809 -4.7516 0.6122 17 1 0.2698 -4.8576 0.0233 18 7 0.8329 -4.3886 1.9881 19 6 -0.2851 -4.8849 2.5539 20 8 -1.0050 -5.6335 1.9222 21 6 -0.6366 -4.5181 3.9423 22 6 0.1886 -3.6588 4.6678 23 6 -0.1449 -3.3199 5.9626 24 6 -1.2936 -3.8300 6.5387 25 6 -2.1201 -4.6838 5.8249 26 6 -1.7973 -5.0303 4.5289 27 6 -2.8488 -5.9648 3.9704 28 6 -4.0697 -5.8051 4.9053 29 6 -3.4118 -5.3617 6.2295 30 1 -0.4851 0.8401 -0.0004 31 1 0.3556 -2.3881 0.0016 32 1 3.0455 -3.2560 -1.8706 33 1 1.5099 -4.1427 -2.0242 34 1 4.0966 -5.2554 -0.8466 35 1 3.4436 -5.6320 -2.4593 36 1 2.8528 -7.4006 -0.8253 37 1 1.3972 -6.5624 -1.4138 38 1 2.8565 -5.9707 1.2010 39 1 1.3208 -6.8570 1.0473 40 1 1.4073 -3.7909 2.4921 41 1 1.0856 -3.2602 4.2173 42 1 0.4916 -2.6545 6.5268 43 1 -1.5494 -3.5604 7.5527 44 1 -3.1112 -5.6741 2.9532 45 1 -2.4886 -6.9934 3.9882 46 1 -4.5908 -6.7543 5.0304 47 1 -4.7464 -5.0364 4.5321 48 1 -3.2038 -6.2280 6.8575 49 1 -4.0584 -4.6599 6.7562 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085437398.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:08:22 Heat of formation + Delta-G solvation = -38.837528 kcal Electronic energy + Delta-G solvation = -28542.161607 eV Core-core repulsion = 24853.050287 eV Total energy + Delta-G solvation = -3689.111320 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 328.189 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.65050 -40.45660 -38.97386 -36.67740 -35.82884 -35.05855 -33.02424 -32.65296 -30.59605 -29.95408 -29.39262 -28.06897 -25.68456 -24.99119 -23.28644 -22.58140 -22.24883 -21.78047 -21.27032 -20.60399 -19.20265 -18.30030 -17.46613 -16.95524 -16.61308 -16.48543 -16.10030 -15.90783 -15.77755 -15.40561 -15.33442 -14.86543 -14.63746 -14.46235 -14.12265 -13.99485 -13.75918 -13.69360 -13.54029 -13.37407 -12.93336 -12.77999 -12.72028 -12.34354 -12.27326 -12.21858 -12.13978 -12.07262 -12.02933 -12.00589 -11.76423 -11.64402 -11.45275 -11.13282 -10.97463 -10.69927 -10.07800 -9.73279 -9.50370 -9.00980 -7.91656 -5.21289 -0.11378 0.36745 1.47339 1.49805 1.55837 1.88917 2.22671 2.56349 2.84890 3.41056 3.43727 3.62318 3.66185 3.75882 3.84212 4.00930 4.11412 4.16906 4.18478 4.24602 4.28362 4.30252 4.41451 4.45696 4.49189 4.56057 4.60366 4.68299 4.77978 4.88381 4.93597 4.93991 4.98947 5.02187 5.12818 5.14376 5.18378 5.22855 5.27833 5.29383 5.30156 5.37865 5.44631 5.45996 5.51564 5.55607 5.57783 5.67555 5.95745 6.27353 6.57837 7.23424 7.33971 8.07483 8.32252 9.31328 Molecular weight = 328.19amu Principal moments of inertia in cm(-1) A = 0.009769 B = 0.004157 C = 0.003227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2865.386046 B = 6734.374262 C = 8675.983406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.971 5.971 2 C -0.073 4.073 3 Si 0.969 3.031 4 H -0.280 1.280 5 H -0.302 1.302 6 H -0.274 1.274 7 C -0.234 4.234 8 H 0.080 0.920 9 N -0.732 5.732 10 C 0.173 3.827 11 H 0.058 0.942 12 C -0.128 4.128 13 C -0.109 4.109 14 C -0.110 4.110 15 C -0.114 4.114 16 C 0.149 3.851 17 H 0.051 0.949 18 N -0.701 5.701 19 C 0.550 3.450 20 O -0.576 6.576 21 C -0.147 4.147 22 C -0.094 4.094 23 C -0.128 4.128 24 C -0.081 4.081 25 C -0.117 4.117 26 C -0.062 4.062 27 C -0.081 4.081 28 C -0.117 4.117 29 C -0.073 4.073 30 H 0.248 0.752 31 H 0.367 0.633 32 H 0.051 0.949 33 H 0.039 0.961 34 H 0.073 0.927 35 H 0.074 0.926 36 H 0.088 0.912 37 H 0.052 0.948 38 H 0.078 0.922 39 H 0.055 0.945 40 H 0.405 0.595 41 H 0.132 0.868 42 H 0.157 0.843 43 H 0.158 0.842 44 H 0.057 0.943 45 H 0.079 0.921 46 H 0.099 0.901 47 H 0.069 0.931 48 H 0.099 0.901 49 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.427 -13.890 13.278 19.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.622 5.622 2 C -0.265 4.265 3 Si 0.799 3.201 4 H -0.206 1.206 5 H -0.229 1.229 6 H -0.200 1.200 7 C -0.365 4.365 8 H 0.098 0.902 9 N -0.371 5.371 10 C 0.064 3.936 11 H 0.076 0.924 12 C -0.168 4.168 13 C -0.147 4.147 14 C -0.148 4.148 15 C -0.153 4.153 16 C 0.043 3.957 17 H 0.070 0.930 18 N -0.350 5.350 19 C 0.339 3.661 20 O -0.458 6.458 21 C -0.150 4.150 22 C -0.112 4.112 23 C -0.146 4.146 24 C -0.099 4.099 25 C -0.117 4.117 26 C -0.063 4.063 27 C -0.118 4.118 28 C -0.155 4.155 29 C -0.110 4.110 30 H 0.057 0.943 31 H 0.198 0.802 32 H 0.070 0.930 33 H 0.058 0.942 34 H 0.091 0.909 35 H 0.093 0.907 36 H 0.107 0.893 37 H 0.071 0.929 38 H 0.096 0.904 39 H 0.074 0.926 40 H 0.241 0.759 41 H 0.149 0.851 42 H 0.175 0.825 43 H 0.175 0.825 44 H 0.075 0.925 45 H 0.097 0.903 46 H 0.118 0.882 47 H 0.088 0.912 48 H 0.117 0.883 49 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 0.091 -14.276 12.821 19.188 hybrid contribution 0.158 1.681 -0.495 1.759 sum 0.249 -12.595 12.327 17.625 Atomic orbital electron populations 1.69849 1.06790 1.25826 1.59695 1.25502 0.96103 1.00925 1.03969 0.85275 0.77125 0.79486 0.78244 1.20650 1.22851 1.20009 1.19558 0.91394 0.84848 1.40735 0.90213 1.42586 1.05104 1.00799 1.88623 1.20668 0.93761 0.84251 0.94907 0.92382 1.22087 0.99510 0.97553 0.97689 1.21515 0.98351 0.93227 1.01618 1.21475 0.99860 0.99142 0.94278 1.21798 0.99939 0.94933 0.98618 1.21186 0.97657 0.95110 0.81733 0.93043 1.45838 1.25042 1.48952 1.15144 1.18693 0.80515 0.79851 0.87011 1.90669 1.51551 1.38449 1.65119 1.19675 0.98246 1.03400 0.93716 1.21442 0.98846 0.95529 0.95426 1.21342 0.98021 1.00700 0.94528 1.21207 0.93030 0.94684 1.00930 1.21032 0.98627 0.98416 0.93624 1.20877 0.93696 0.96236 0.95519 1.21125 0.93406 0.97830 0.99433 1.22427 0.95981 1.02964 0.94106 1.21101 0.91556 1.00418 0.97924 0.94346 0.80170 0.93029 0.94163 0.90878 0.90717 0.89348 0.92874 0.90357 0.92649 0.75882 0.85070 0.82539 0.82474 0.92474 0.90268 0.88202 0.91200 0.88304 0.88753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.05 13.06 21.65 0.28 -59.77 16 2 C -0.07 -4.13 5.50 84.86 0.47 -3.66 16 3 Si 0.97 45.62 29.55 68.60 2.03 47.65 16 4 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 5 H -0.30 -14.60 7.11 99.48 0.71 -13.89 16 6 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 7 C -0.23 -12.55 9.93 84.03 0.83 -11.71 16 8 H 0.08 4.05 7.83 -2.91 -0.02 4.02 16 9 N -0.73 -36.36 4.95 -322.94 -1.60 -37.96 16 10 C 0.17 6.65 2.29 44.99 0.10 6.75 16 11 H 0.06 2.15 8.08 -2.39 -0.02 2.13 16 12 C -0.13 -4.44 5.50 30.59 0.17 -4.28 16 13 C -0.11 -2.77 5.92 30.59 0.18 -2.58 16 14 C -0.11 -2.69 5.92 30.59 0.18 -2.51 16 15 C -0.11 -3.24 5.49 30.59 0.17 -3.07 16 16 C 0.15 5.34 1.98 44.99 0.09 5.43 16 17 H 0.05 2.19 7.57 -2.39 -0.02 2.17 16 18 N -0.70 -25.17 4.86 -445.42 -2.16 -27.33 16 19 C 0.55 21.14 7.74 86.79 0.67 21.81 16 20 O -0.58 -24.97 14.36 -3.88 -0.06 -25.02 16 21 C -0.15 -4.95 5.88 -20.06 -0.12 -5.07 16 22 C -0.09 -2.67 9.54 22.50 0.21 -2.46 16 23 C -0.13 -2.89 10.03 22.20 0.22 -2.67 16 24 C -0.08 -1.65 10.03 22.37 0.22 -1.43 16 25 C -0.12 -2.76 6.13 -19.62 -0.12 -2.88 16 26 C -0.06 -1.89 6.03 -19.35 -0.12 -2.01 16 27 C -0.08 -2.27 5.59 30.60 0.17 -2.10 16 28 C -0.12 -2.27 7.10 31.60 0.22 -2.05 16 29 C -0.07 -1.23 6.76 30.53 0.21 -1.03 16 30 H 0.25 15.04 8.31 -92.71 -0.77 14.27 16 31 H 0.37 20.70 7.80 -92.71 -0.72 19.98 16 32 H 0.05 1.92 8.14 -2.39 -0.02 1.91 16 33 H 0.04 1.51 8.14 -2.39 -0.02 1.50 16 34 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 35 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 36 H 0.09 1.71 8.14 -2.38 -0.02 1.69 16 37 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 38 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 39 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 40 H 0.40 13.69 6.63 -92.70 -0.61 13.08 16 41 H 0.13 3.55 6.40 -2.91 -0.02 3.53 16 42 H 0.16 2.59 8.06 -2.91 -0.02 2.57 16 43 H 0.16 2.07 8.06 -2.91 -0.02 2.05 16 44 H 0.06 1.94 7.19 -2.39 -0.02 1.93 16 45 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 46 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 47 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 48 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 49 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 Total: -1.00 -70.73 387.24 1.88 -68.85 By element: Atomic # 1 Polarization: 49.49 SS G_CDS: -0.38 Total: 49.10 kcal Atomic # 6 Polarization: -19.30 SS G_CDS: 3.77 Total: -15.53 kcal Atomic # 7 Polarization: -121.58 SS G_CDS: -3.48 Total: -125.06 kcal Atomic # 8 Polarization: -24.97 SS G_CDS: -0.06 Total: -25.02 kcal Atomic # 14 Polarization: 45.62 SS G_CDS: 2.03 Total: 47.65 kcal Total: -70.73 1.88 -68.85 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085437398.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.014 kcal (2) G-P(sol) polarization free energy of solvation -70.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.851 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds