Wall clock time and date at job start Tue Mar 31 2020 16:04:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86803 * 119.99962 * 2 1 4 4 H 1.48498 * 109.47293 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.46984 * 299.99966 * 3 2 1 6 6 H 1.48495 * 109.47177 * 59.99856 * 3 2 1 7 7 C 1.38804 * 120.00059 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00322 * 179.97438 * 7 2 1 9 9 N 1.36939 * 120.00179 * 359.97438 * 7 2 1 10 10 C 1.46495 * 120.00210 * 179.97438 * 9 7 2 11 11 H 1.08998 * 112.85463 * 336.19678 * 10 9 7 12 12 C 1.53784 * 113.61645 * 107.50441 * 10 9 7 13 13 C 1.53774 * 87.08558 * 139.97894 * 12 10 9 14 14 H 1.09002 * 113.69059 * 89.12260 * 13 12 10 15 15 C 1.52998 * 113.61929 * 220.02025 * 13 12 10 16 16 N 1.46500 * 109.47063 * 272.49710 * 15 13 12 17 17 C 1.34778 * 119.99699 * 179.97438 * 16 15 13 18 18 O 1.21279 * 119.99993 * 5.12789 * 17 16 15 19 19 C 1.50699 * 119.99763 * 185.12267 * 17 16 15 20 20 H 1.09004 * 109.25127 * 24.15767 * 19 17 16 21 21 C 1.52738 * 109.25402 * 143.62045 * 19 17 16 22 22 C 1.53327 * 108.37273 * 171.32148 * 21 19 17 23 23 C 1.52731 * 108.37619 * 290.07989 * 22 21 19 24 24 C 1.50629 * 110.59243 * 51.05876 * 23 22 21 25 25 C 1.38911 * 117.75586 * 162.53167 * 24 23 22 26 26 C 1.37933 * 120.54778 * 179.76602 * 25 24 23 27 27 C 1.38258 * 119.77354 * 359.97438 * 26 25 24 28 28 C 1.37931 * 119.76935 * 0.10890 * 27 26 25 29 29 C 1.37599 * 122.54594 * 342.47687 * 24 23 22 30 30 C 1.53782 * 113.61517 * 205.00086 * 10 9 7 31 31 H 0.97000 * 119.99719 * 0.02562 * 1 2 3 32 32 H 0.97000 * 119.99710 * 0.02562 * 9 7 2 33 33 H 1.09007 * 113.61109 * 25.42976 * 12 10 9 34 34 H 1.08996 * 113.61308 * 254.53223 * 12 10 9 35 35 H 1.08996 * 109.47110 * 152.49517 * 15 13 12 36 36 H 1.09002 * 109.47035 * 32.49919 * 15 13 12 37 37 H 0.97000 * 119.99845 * 0.02562 * 16 15 13 38 38 H 1.09000 * 109.68598 * 291.04583 * 21 19 17 39 39 H 1.09001 * 109.68116 * 51.60673 * 21 19 17 40 40 H 1.09003 * 109.68278 * 49.79803 * 22 21 19 41 41 H 1.08997 * 109.68441 * 170.31982 * 22 21 19 42 42 H 1.09007 * 109.25241 * 171.34640 * 23 22 21 43 43 H 1.09000 * 109.25539 * 290.80968 * 23 22 21 44 44 H 1.08001 * 119.72287 * 359.77685 * 25 24 23 45 45 H 1.08001 * 120.10865 * 179.97438 * 26 25 24 46 46 H 1.08002 * 120.11562 * 180.08395 * 27 26 25 47 47 H 1.08009 * 119.72700 * 179.97438 * 28 27 26 48 48 H 1.08999 * 113.61335 * 105.47469 * 30 10 9 49 49 H 1.08994 * 113.69216 * 334.57860 * 30 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3465 -0.0006 5 1 1.8914 2.3965 -1.2126 6 1 1.8915 2.3965 1.2124 7 6 2.0102 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 2.0581 -3.6567 -0.0017 11 1 3.0653 -3.5637 -0.4078 12 6 2.0001 -4.4028 1.3418 13 6 1.8484 -5.6978 0.5267 14 1 2.7980 -6.1647 0.2654 15 6 0.8457 -6.6857 1.1264 16 7 1.5277 -7.5441 2.0981 17 6 0.8378 -8.4962 2.7571 18 8 -0.3242 -8.7048 2.4794 19 6 1.5104 -9.3015 3.8387 20 1 2.3482 -8.7326 4.2421 21 6 0.5072 -9.5811 4.9560 22 6 1.1395 -10.5775 5.9350 23 6 1.2365 -11.9360 5.2439 24 6 1.8998 -11.7998 3.8985 25 6 2.3995 -12.9516 3.3040 26 6 3.0137 -12.8939 2.0703 27 6 3.1331 -11.6803 1.4189 28 6 2.6391 -10.5352 2.0082 29 6 2.0222 -10.5911 3.2524 30 6 1.2597 -4.8285 -0.5971 31 1 -0.4850 0.8401 -0.0004 32 1 0.3556 -2.3880 -0.0005 33 1 1.1222 -4.1578 1.9398 34 1 2.9286 -4.3510 1.9104 35 1 0.4224 -7.3007 0.3324 36 1 0.0474 -6.1356 1.6247 37 1 2.4755 -7.4268 2.2678 38 1 0.2706 -8.6538 5.4776 39 1 -0.4026 -10.0082 4.5341 40 1 2.1362 -10.2357 6.2142 41 1 0.5174 -10.6618 6.8261 42 1 1.8206 -12.6147 5.8656 43 1 0.2344 -12.3437 5.1104 44 1 2.3062 -13.9001 3.8120 45 1 3.4001 -13.7938 1.6149 46 1 3.6118 -11.6290 0.4521 47 1 2.7331 -9.5874 1.4988 48 1 1.5906 -5.1204 -1.5938 49 1 0.1793 -4.7012 -0.5301 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086121919.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:04:07 Heat of formation + Delta-G solvation = -0.684611 kcal Electronic energy + Delta-G solvation = -27183.361372 eV Core-core repulsion = 23495.904487 eV Total energy + Delta-G solvation = -3687.456885 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 328.189 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.96681 -39.31269 -38.39308 -36.23395 -34.69263 -33.41023 -32.88287 -30.56680 -30.28066 -29.37481 -27.40867 -25.10490 -24.60468 -23.75120 -23.00451 -22.67815 -21.05835 -20.68043 -19.59264 -19.04922 -17.43071 -17.04252 -16.78271 -16.19978 -15.80248 -15.64045 -15.18511 -14.85440 -14.66476 -14.38798 -14.00432 -13.98395 -13.57947 -13.51735 -13.30041 -13.15161 -12.97036 -12.62910 -12.39155 -11.99526 -11.89766 -11.82077 -11.71599 -11.39804 -11.28685 -11.24325 -11.01519 -10.86410 -10.65772 -10.53653 -10.27037 -10.12107 -9.85686 -9.83893 -9.49658 -9.05494 -9.02150 -8.88456 -8.83282 -6.97428 -5.79528 -3.08429 1.03726 1.08611 2.54818 3.08505 3.41445 3.46948 3.48907 3.49392 4.22520 4.30196 4.53397 4.57160 4.58307 4.65028 4.78057 4.81051 4.91174 4.96404 5.03457 5.06506 5.10334 5.18904 5.22755 5.31095 5.45577 5.49555 5.52219 5.53986 5.63072 5.67078 5.72257 5.81655 5.83339 5.86924 5.93491 6.03544 6.08124 6.18951 6.23514 6.24794 6.30404 6.31796 6.34935 6.44433 6.58097 6.70653 6.81572 7.10032 7.43342 7.68275 8.15262 8.39039 9.50117 10.08473 10.42560 11.42897 Molecular weight = 328.19amu Principal moments of inertia in cm(-1) A = 0.023564 B = 0.002053 C = 0.001974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1187.956506 B =13637.435323 C =14180.147782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.014 4.014 3 Si 0.907 3.093 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.243 4.243 8 H 0.072 0.928 9 N -0.713 5.713 10 C 0.166 3.834 11 H 0.075 0.925 12 C -0.160 4.160 13 C -0.127 4.127 14 H 0.088 0.912 15 C 0.131 3.869 16 N -0.726 5.726 17 C 0.520 3.480 18 O -0.535 6.535 19 C -0.065 4.065 20 H 0.100 0.900 21 C -0.107 4.107 22 C -0.118 4.118 23 C -0.083 4.083 24 C -0.067 4.067 25 C -0.122 4.122 26 C -0.118 4.118 27 C -0.120 4.120 28 C -0.118 4.118 29 C -0.065 4.065 30 C -0.142 4.142 31 H 0.255 0.745 32 H 0.385 0.615 33 H 0.078 0.922 34 H 0.053 0.947 35 H 0.064 0.936 36 H 0.069 0.931 37 H 0.400 0.600 38 H 0.073 0.927 39 H 0.082 0.918 40 H 0.067 0.933 41 H 0.073 0.927 42 H 0.075 0.925 43 H 0.078 0.922 44 H 0.121 0.879 45 H 0.122 0.878 46 H 0.123 0.877 47 H 0.122 0.878 48 H 0.061 0.939 49 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.630 -27.938 9.376 30.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.210 4.210 3 Si 0.738 3.262 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.374 4.374 8 H 0.089 0.911 9 N -0.351 5.351 10 C 0.054 3.946 11 H 0.093 0.907 12 C -0.202 4.202 13 C -0.146 4.146 14 H 0.106 0.894 15 C 0.008 3.992 16 N -0.377 5.377 17 C 0.305 3.695 18 O -0.411 6.411 19 C -0.087 4.087 20 H 0.118 0.882 21 C -0.145 4.145 22 C -0.156 4.156 23 C -0.120 4.120 24 C -0.067 4.067 25 C -0.140 4.140 26 C -0.136 4.136 27 C -0.138 4.138 28 C -0.136 4.136 29 C -0.066 4.066 30 C -0.182 4.182 31 H 0.065 0.935 32 H 0.219 0.781 33 H 0.096 0.904 34 H 0.072 0.928 35 H 0.083 0.917 36 H 0.088 0.912 37 H 0.234 0.766 38 H 0.091 0.909 39 H 0.101 0.899 40 H 0.086 0.914 41 H 0.092 0.908 42 H 0.094 0.906 43 H 0.097 0.903 44 H 0.139 0.861 45 H 0.140 0.860 46 H 0.141 0.859 47 H 0.140 0.860 48 H 0.080 0.920 49 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 5.885 -27.865 9.151 29.914 hybrid contribution 0.669 0.994 -0.042 1.199 sum 6.553 -26.871 9.109 29.120 Atomic orbital electron populations 1.69673 1.05134 1.25635 1.57537 1.24778 0.95537 0.97817 1.02881 0.86118 0.78774 0.84095 0.77199 1.20538 1.21850 1.21849 1.19345 0.91086 0.84235 1.42780 0.91052 1.42424 1.05778 0.99900 1.86981 1.21518 0.95298 0.85042 0.92773 0.90684 1.23945 1.01336 0.94926 0.99946 1.22639 0.98353 0.94416 0.99233 0.89419 1.21454 0.95290 0.91472 0.90995 1.46202 1.13127 1.35434 1.42977 1.20385 0.86898 0.79844 0.82346 1.90700 1.17080 1.67304 1.66028 1.20216 0.99449 0.93839 0.95146 0.88231 1.21480 0.98203 1.00169 0.94631 1.21552 1.01481 0.94519 0.98006 1.20515 1.00683 0.98196 0.92564 1.19555 0.98360 0.92222 0.96564 1.21139 0.99207 0.97731 0.95936 1.21094 0.99408 0.97855 0.95285 1.21062 1.00131 0.92640 0.99986 1.21301 0.98292 0.99108 0.94924 1.19136 0.99211 0.93255 0.94990 1.23450 1.01040 0.97027 0.96703 0.93493 0.78066 0.90350 0.92786 0.91743 0.91237 0.76611 0.90878 0.89930 0.91419 0.90824 0.90619 0.90343 0.86065 0.86024 0.85920 0.85997 0.92026 0.90117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.15 13.06 55.49 0.72 -27.43 16 2 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16 3 Si 0.91 22.28 29.55 -169.99 -5.02 17.25 16 4 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 5 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 6 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 7 C -0.24 -6.70 9.97 -15.06 -0.15 -6.85 16 8 H 0.07 1.90 7.83 -52.48 -0.41 1.49 16 9 N -0.71 -17.71 5.40 -52.64 -0.28 -18.00 16 10 C 0.17 3.17 4.48 -67.12 -0.30 2.87 16 11 H 0.08 1.42 8.10 -51.93 -0.42 1.00 16 12 C -0.16 -2.60 7.43 -25.92 -0.19 -2.79 16 13 C -0.13 -1.66 3.75 -89.81 -0.34 -2.00 16 14 H 0.09 0.99 8.14 -51.93 -0.42 0.56 16 15 C 0.13 1.70 5.52 -4.04 -0.02 1.68 16 16 N -0.73 -8.05 4.75 -60.30 -0.29 -8.34 16 17 C 0.52 6.54 5.72 -10.99 -0.06 6.48 16 18 O -0.53 -8.95 16.12 5.56 0.09 -8.86 16 19 C -0.07 -0.63 2.57 -93.09 -0.24 -0.87 16 20 H 0.10 0.77 8.12 -51.93 -0.42 0.35 16 21 C -0.11 -0.98 5.07 -26.70 -0.14 -1.11 16 22 C -0.12 -0.80 5.98 -26.70 -0.16 -0.96 16 23 C -0.08 -0.58 5.67 -28.06 -0.16 -0.74 16 24 C -0.07 -0.60 5.74 -104.64 -0.60 -1.20 16 25 C -0.12 -1.00 9.61 -39.44 -0.38 -1.38 16 26 C -0.12 -0.96 10.05 -39.69 -0.40 -1.36 16 27 C -0.12 -1.07 10.05 -39.69 -0.40 -1.46 16 28 C -0.12 -1.17 9.04 -39.42 -0.36 -1.52 16 29 C -0.07 -0.65 5.42 -104.61 -0.57 -1.22 16 30 C -0.14 -2.25 7.39 -25.91 -0.19 -2.44 16 31 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 32 H 0.39 10.22 7.92 -40.82 -0.32 9.90 16 33 H 0.08 1.41 7.90 -51.92 -0.41 1.00 16 34 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 36 H 0.07 1.03 7.84 -51.93 -0.41 0.63 16 37 H 0.40 3.44 8.34 -40.82 -0.34 3.09 16 38 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.08 0.91 7.51 -51.93 -0.39 0.52 16 40 H 0.07 0.43 8.10 -51.93 -0.42 0.01 16 41 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 42 H 0.08 0.41 8.13 -51.93 -0.42 -0.01 16 43 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 44 H 0.12 0.73 8.05 -52.49 -0.42 0.30 16 45 H 0.12 0.72 8.06 -52.49 -0.42 0.29 16 46 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 47 H 0.12 1.14 6.53 -52.48 -0.34 0.79 16 48 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 49 H 0.08 1.35 8.08 -51.93 -0.42 0.93 16 LS Contribution 393.04 15.07 5.92 5.92 Total: -1.00 -32.90 393.04 -11.70 -44.60 By element: Atomic # 1 Polarization: 18.33 SS G_CDS: -8.09 Total: 10.24 kcal Atomic # 6 Polarization: -10.64 SS G_CDS: -4.75 Total: -15.39 kcal Atomic # 7 Polarization: -53.92 SS G_CDS: 0.15 Total: -53.76 kcal Atomic # 8 Polarization: -8.95 SS G_CDS: 0.09 Total: -8.86 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.02 Total: 17.25 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -32.90 -11.70 -44.60 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086121919.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.912 kcal (2) G-P(sol) polarization free energy of solvation -32.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.596 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds