Wall clock time and date at job start Tue Mar 31 2020 16:04:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86795 * 120.00424 * 2 1 4 4 H 1.48506 * 109.47268 * 270.00315 * 3 2 1 5 5 H 1.48502 * 109.47089 * 30.00146 * 3 2 1 6 6 H 1.48495 * 109.47441 * 150.00452 * 3 2 1 7 7 C 1.38821 * 119.99782 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99632 * 179.97438 * 7 2 1 9 9 N 1.36940 * 119.99771 * 0.02562 * 7 2 1 10 10 C 1.46495 * 119.99463 * 180.27569 * 9 7 2 11 11 H 1.08998 * 112.85267 * 23.52947 * 10 9 7 12 12 C 1.53784 * 113.61203 * 154.72058 * 10 9 7 13 13 C 1.53782 * 87.07975 * 139.97907 * 12 10 9 14 14 H 1.08994 * 113.61570 * 89.12188 * 13 12 10 15 15 C 1.53004 * 113.61183 * 219.93426 * 13 12 10 16 16 N 1.46501 * 109.46818 * 185.00082 * 15 13 12 17 17 C 1.34782 * 119.99955 * 180.02562 * 16 15 13 18 18 O 1.21281 * 119.99456 * 354.87573 * 17 16 15 19 19 C 1.50695 * 119.99997 * 174.87618 * 17 16 15 20 20 H 1.08999 * 109.25111 * 335.84814 * 19 17 16 21 21 C 1.52734 * 109.25426 * 216.36988 * 19 17 16 22 22 C 1.53332 * 108.37321 * 188.63997 * 21 19 17 23 23 C 1.52731 * 108.37263 * 69.92797 * 22 21 19 24 24 C 1.50634 * 110.59370 * 308.94444 * 23 22 21 25 25 C 1.38910 * 117.75429 * 197.47358 * 24 23 22 26 26 C 1.37931 * 120.54810 * 180.18945 * 25 24 23 27 27 C 1.38268 * 119.76994 * 0.03836 * 26 25 24 28 28 C 1.37927 * 119.77373 * 359.89904 * 27 26 25 29 29 C 1.37662 * 122.56556 * 17.52531 * 24 23 22 30 30 C 1.53781 * 113.61173 * 252.21504 * 10 9 7 31 31 H 0.97000 * 119.99375 * 359.97438 * 1 2 3 32 32 H 0.96994 * 119.99980 * 359.97438 * 9 7 2 33 33 H 1.08998 * 113.61836 * 254.52761 * 12 10 9 34 34 H 1.09009 * 113.61095 * 25.34913 * 12 10 9 35 35 H 1.09001 * 109.47461 * 305.00272 * 15 13 12 36 36 H 1.09004 * 109.46924 * 65.00313 * 15 13 12 37 37 H 0.96994 * 120.00336 * 0.02562 * 16 15 13 38 38 H 1.08996 * 109.68834 * 308.36960 * 21 19 17 39 39 H 1.09010 * 109.67909 * 68.92558 * 21 19 17 40 40 H 1.09001 * 109.68518 * 189.64889 * 22 21 19 41 41 H 1.09006 * 109.68295 * 310.20603 * 22 21 19 42 42 H 1.09006 * 109.25571 * 69.22576 * 23 22 21 43 43 H 1.08997 * 109.25578 * 188.65500 * 23 22 21 44 44 H 1.07999 * 119.72561 * 0.20917 * 25 24 23 45 45 H 1.07998 * 120.11379 * 180.02562 * 26 25 24 46 46 H 1.08004 * 120.11394 * 179.90904 * 27 26 25 47 47 H 1.07998 * 119.73131 * 180.02562 * 28 27 26 48 48 H 1.08998 * 113.61538 * 334.56868 * 30 10 9 49 49 H 1.09003 * 113.61060 * 105.47943 * 30 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4478 2.6526 0.7001 6 1 3.5478 1.4400 0.6999 7 6 2.0102 -1.2023 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0016 10 6 2.0579 -3.6568 0.0039 11 1 3.0653 -3.5622 0.4094 12 6 1.2598 -4.8263 0.6041 13 6 1.8479 -5.6998 -0.5166 14 1 2.7983 -6.1647 -0.2547 15 6 0.8455 -6.6913 -1.1109 16 7 1.5271 -7.5531 -2.0799 17 6 0.8374 -8.5087 -2.7339 18 8 -0.3241 -8.7173 -2.4539 19 6 1.5095 -9.3180 -3.8130 20 1 2.3462 -8.7500 -4.2197 21 6 0.5051 -9.6036 -4.9277 22 6 1.1376 -10.6027 -5.9038 23 6 1.2376 -11.9584 -5.2076 24 6 1.9026 -11.8160 -3.8635 25 6 2.4049 -12.9647 -3.2653 26 6 3.0215 -12.9012 -2.0331 27 6 3.1403 -11.6847 -1.3867 28 6 2.6433 -10.5427 -1.9795 29 6 2.0241 -10.6043 -3.2215 30 6 1.9993 -4.4078 -1.3368 31 1 -0.4849 0.8401 0.0004 32 1 0.3555 -2.3881 -0.0016 33 1 1.5909 -5.1146 1.6017 34 1 0.1794 -4.6972 0.5375 35 1 0.4237 -7.3034 -0.3137 36 1 0.0460 -6.1441 -1.6106 37 1 2.4746 -7.4361 -2.2507 38 1 -0.4035 -10.0302 -4.5029 39 1 0.2664 -8.6785 -5.4526 40 1 0.5141 -10.6919 -6.7933 41 1 2.1334 -10.2603 -6.1857 42 1 0.2364 -12.3674 -5.0716 43 1 1.8219 -12.6385 -5.8273 44 1 2.3122 -13.9153 -3.7694 45 1 3.4099 -13.7986 -1.5747 46 1 3.6207 -11.6288 -0.4211 47 1 2.7368 -9.5928 -1.4742 48 1 1.1212 -4.1650 -1.9352 49 1 2.9276 -4.3582 -1.9059 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086121920.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:04:10 Heat of formation + Delta-G solvation = -0.629884 kcal Electronic energy + Delta-G solvation = -27181.456300 eV Core-core repulsion = 23494.001788 eV Total energy + Delta-G solvation = -3687.454512 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 328.189 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.96525 -39.31105 -38.39156 -36.23324 -34.69158 -33.40874 -32.88395 -30.56440 -30.27989 -29.37672 -27.40807 -25.10323 -24.60364 -23.74834 -23.00528 -22.67582 -21.05672 -20.67981 -19.59328 -19.04851 -17.42993 -17.04067 -16.78232 -16.19906 -15.80215 -15.64036 -15.18469 -14.85208 -14.66381 -14.38760 -14.00523 -13.98235 -13.58075 -13.52130 -13.29876 -13.15163 -12.96332 -12.62815 -12.39178 -11.99518 -11.89656 -11.82067 -11.71569 -11.39842 -11.28631 -11.24090 -11.01548 -10.84503 -10.65794 -10.54266 -10.26877 -10.14660 -9.85484 -9.84087 -9.49367 -9.05565 -9.02195 -8.87735 -8.83094 -6.97411 -5.79285 -3.08166 1.03729 1.08605 2.54813 3.08541 3.41844 3.46918 3.48777 3.48940 4.22525 4.30209 4.53421 4.57339 4.58277 4.65007 4.78015 4.81069 4.91158 4.96563 5.03472 5.06536 5.10313 5.18973 5.22895 5.31090 5.45644 5.49618 5.52245 5.53935 5.63065 5.67095 5.72304 5.81746 5.83385 5.86921 5.93549 6.03556 6.08367 6.18983 6.23526 6.24861 6.30562 6.31789 6.35032 6.44517 6.58190 6.70645 6.81710 7.10119 7.43364 7.67948 8.15286 8.39290 9.50281 10.08665 10.42790 11.43077 Molecular weight = 328.19amu Principal moments of inertia in cm(-1) A = 0.023592 B = 0.002051 C = 0.001973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1186.543132 B =13646.499723 C =14188.116107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.014 4.014 3 Si 0.907 3.093 4 H -0.290 1.290 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.244 4.244 8 H 0.071 0.929 9 N -0.713 5.713 10 C 0.166 3.834 11 H 0.075 0.925 12 C -0.143 4.143 13 C -0.127 4.127 14 H 0.087 0.913 15 C 0.131 3.869 16 N -0.726 5.726 17 C 0.520 3.480 18 O -0.535 6.535 19 C -0.065 4.065 20 H 0.100 0.900 21 C -0.107 4.107 22 C -0.118 4.118 23 C -0.083 4.083 24 C -0.067 4.067 25 C -0.122 4.122 26 C -0.118 4.118 27 C -0.120 4.120 28 C -0.118 4.118 29 C -0.065 4.065 30 C -0.160 4.160 31 H 0.256 0.744 32 H 0.385 0.615 33 H 0.061 0.939 34 H 0.080 0.920 35 H 0.064 0.936 36 H 0.069 0.931 37 H 0.400 0.600 38 H 0.082 0.918 39 H 0.073 0.927 40 H 0.073 0.927 41 H 0.067 0.933 42 H 0.078 0.922 43 H 0.075 0.925 44 H 0.121 0.879 45 H 0.122 0.878 46 H 0.123 0.877 47 H 0.122 0.878 48 H 0.078 0.922 49 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.607 -27.947 -9.280 30.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.210 4.210 3 Si 0.738 3.262 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.207 1.207 7 C -0.375 4.375 8 H 0.089 0.911 9 N -0.351 5.351 10 C 0.054 3.946 11 H 0.093 0.907 12 C -0.182 4.182 13 C -0.146 4.146 14 H 0.106 0.894 15 C 0.008 3.992 16 N -0.377 5.377 17 C 0.305 3.695 18 O -0.411 6.411 19 C -0.086 4.086 20 H 0.118 0.882 21 C -0.145 4.145 22 C -0.156 4.156 23 C -0.120 4.120 24 C -0.067 4.067 25 C -0.140 4.140 26 C -0.136 4.136 27 C -0.138 4.138 28 C -0.136 4.136 29 C -0.066 4.066 30 C -0.201 4.201 31 H 0.066 0.934 32 H 0.219 0.781 33 H 0.080 0.920 34 H 0.099 0.901 35 H 0.083 0.917 36 H 0.088 0.912 37 H 0.234 0.766 38 H 0.101 0.899 39 H 0.091 0.909 40 H 0.092 0.908 41 H 0.086 0.914 42 H 0.097 0.903 43 H 0.094 0.906 44 H 0.139 0.861 45 H 0.140 0.860 46 H 0.141 0.859 47 H 0.140 0.860 48 H 0.096 0.904 49 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 5.854 -27.869 -9.047 29.879 hybrid contribution 0.682 0.991 0.035 1.203 sum 6.536 -26.878 -9.012 29.092 Atomic orbital electron populations 1.69663 1.05138 1.25750 1.57434 1.24781 0.95536 0.97813 1.02854 0.86185 0.78647 0.83800 0.77519 1.21702 1.21759 1.20743 1.19302 0.91054 0.84248 1.42934 0.91107 1.42416 1.05771 0.99891 1.86986 1.21518 0.95304 0.85043 0.92774 0.90686 1.23454 1.01052 0.97014 0.96724 1.22637 0.98346 0.94387 0.99259 0.89428 1.21454 0.95296 0.91384 0.91068 1.46203 1.13156 1.35138 1.43245 1.20387 0.86889 0.79877 0.82324 1.90700 1.17113 1.67467 1.65833 1.20217 0.99435 0.93841 0.95156 0.88233 1.21480 0.98185 1.00141 0.94672 1.21554 1.01476 0.94526 0.98001 1.20515 1.00674 0.98203 0.92566 1.19573 0.98351 0.92217 0.96564 1.21138 0.99189 0.97761 0.95928 1.21095 0.99404 0.97826 0.95318 1.21063 1.00126 0.92642 0.99986 1.21278 0.98280 0.99134 0.94926 1.19139 0.99194 0.93249 0.95010 1.23944 1.01332 0.94951 0.99912 0.93443 0.78063 0.92031 0.90113 0.91740 0.91237 0.76614 0.89929 0.90878 0.90825 0.91413 0.90343 0.90623 0.86066 0.86023 0.85919 0.86003 0.90353 0.92786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.16 13.06 55.49 0.72 -27.43 16 2 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 3 Si 0.91 22.28 29.55 -169.99 -5.02 17.25 16 4 H -0.29 -7.09 7.11 56.52 0.40 -6.68 16 5 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 6 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 7 C -0.24 -6.73 9.97 -15.05 -0.15 -6.88 16 8 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 9 N -0.71 -17.72 5.40 -52.64 -0.28 -18.00 16 10 C 0.17 3.17 4.48 -67.12 -0.30 2.87 16 11 H 0.08 1.42 8.10 -51.93 -0.42 1.00 16 12 C -0.14 -2.25 7.39 -25.92 -0.19 -2.44 16 13 C -0.13 -1.66 3.75 -89.80 -0.34 -2.00 16 14 H 0.09 0.99 8.14 -51.93 -0.42 0.56 16 15 C 0.13 1.71 5.52 -4.04 -0.02 1.68 16 16 N -0.73 -8.05 4.76 -60.29 -0.29 -8.34 16 17 C 0.52 6.54 5.73 -10.99 -0.06 6.48 16 18 O -0.53 -8.95 16.12 5.56 0.09 -8.86 16 19 C -0.07 -0.63 2.57 -93.09 -0.24 -0.87 16 20 H 0.10 0.77 8.12 -51.93 -0.42 0.35 16 21 C -0.11 -0.98 5.07 -26.70 -0.14 -1.11 16 22 C -0.12 -0.80 5.98 -26.70 -0.16 -0.96 16 23 C -0.08 -0.58 5.67 -28.05 -0.16 -0.74 16 24 C -0.07 -0.60 5.74 -104.62 -0.60 -1.20 16 25 C -0.12 -1.00 9.61 -39.44 -0.38 -1.38 16 26 C -0.12 -0.96 10.05 -39.68 -0.40 -1.36 16 27 C -0.12 -1.06 10.05 -39.68 -0.40 -1.46 16 28 C -0.12 -1.17 9.04 -39.44 -0.36 -1.52 16 29 C -0.07 -0.65 5.42 -104.61 -0.57 -1.22 16 30 C -0.16 -2.60 7.43 -25.92 -0.19 -2.79 16 31 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 32 H 0.39 10.23 7.92 -40.82 -0.32 9.90 16 33 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.08 1.35 8.08 -51.92 -0.42 0.93 16 35 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 36 H 0.07 1.03 7.85 -51.93 -0.41 0.63 16 37 H 0.40 3.44 8.34 -40.82 -0.34 3.10 16 38 H 0.08 0.91 7.51 -51.93 -0.39 0.52 16 39 H 0.07 0.64 8.14 -51.92 -0.42 0.22 16 40 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.07 0.43 8.10 -51.93 -0.42 0.01 16 42 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.08 0.41 8.13 -51.93 -0.42 -0.01 16 44 H 0.12 0.73 8.05 -52.49 -0.42 0.30 16 45 H 0.12 0.72 8.06 -52.49 -0.42 0.29 16 46 H 0.12 0.87 8.06 -52.48 -0.42 0.45 16 47 H 0.12 1.13 6.53 -52.49 -0.34 0.79 16 48 H 0.08 1.41 7.90 -51.93 -0.41 1.00 16 49 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 LS Contribution 393.05 15.07 5.92 5.92 Total: -1.00 -32.88 393.05 -11.70 -44.58 By element: Atomic # 1 Polarization: 18.38 SS G_CDS: -8.09 Total: 10.28 kcal Atomic # 6 Polarization: -10.66 SS G_CDS: -4.75 Total: -15.41 kcal Atomic # 7 Polarization: -53.93 SS G_CDS: 0.15 Total: -53.77 kcal Atomic # 8 Polarization: -8.95 SS G_CDS: 0.09 Total: -8.86 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.02 Total: 17.25 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -32.88 -11.70 -44.58 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086121920.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.945 kcal (2) G-P(sol) polarization free energy of solvation -32.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.575 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds