Wall clock time and date at job start Tue Mar 31 2020 16:04:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86795 * 120.00424 * 2 1 4 4 H 1.48506 * 109.47268 * 270.00315 * 3 2 1 5 5 H 1.48502 * 109.47089 * 30.00146 * 3 2 1 6 6 H 1.48495 * 109.47441 * 150.00452 * 3 2 1 7 7 C 1.38821 * 119.99782 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99632 * 179.97438 * 7 2 1 9 9 N 1.36940 * 119.99771 * 0.02562 * 7 2 1 10 10 C 1.46495 * 119.99463 * 180.27569 * 9 7 2 11 11 H 1.08998 * 112.85267 * 23.52947 * 10 9 7 12 12 C 1.53784 * 113.61203 * 154.72058 * 10 9 7 13 13 C 1.53782 * 87.07975 * 139.97907 * 12 10 9 14 14 H 1.08994 * 113.61570 * 89.12188 * 13 12 10 15 15 C 1.53004 * 113.61183 * 219.93426 * 13 12 10 16 16 N 1.46501 * 109.46818 * 185.00082 * 15 13 12 17 17 C 1.34782 * 119.99955 * 180.02562 * 16 15 13 18 18 O 1.21281 * 119.99456 * 354.87573 * 17 16 15 19 19 C 1.50695 * 119.99997 * 174.87618 * 17 16 15 20 20 H 1.08999 * 109.25111 * 335.84814 * 19 17 16 21 21 C 1.52734 * 109.25426 * 216.36988 * 19 17 16 22 22 C 1.53332 * 108.37321 * 188.63997 * 21 19 17 23 23 C 1.52731 * 108.37263 * 69.92797 * 22 21 19 24 24 C 1.50634 * 110.59370 * 308.94444 * 23 22 21 25 25 C 1.38910 * 117.75429 * 197.47358 * 24 23 22 26 26 C 1.37931 * 120.54810 * 180.18945 * 25 24 23 27 27 C 1.38268 * 119.76994 * 0.03836 * 26 25 24 28 28 C 1.37927 * 119.77373 * 359.89904 * 27 26 25 29 29 C 1.37662 * 122.56556 * 17.52531 * 24 23 22 30 30 C 1.53781 * 113.61173 * 252.21504 * 10 9 7 31 31 H 0.97000 * 119.99375 * 359.97438 * 1 2 3 32 32 H 0.96994 * 119.99980 * 359.97438 * 9 7 2 33 33 H 1.08998 * 113.61836 * 254.52761 * 12 10 9 34 34 H 1.09009 * 113.61095 * 25.34913 * 12 10 9 35 35 H 1.09001 * 109.47461 * 305.00272 * 15 13 12 36 36 H 1.09004 * 109.46924 * 65.00313 * 15 13 12 37 37 H 0.96994 * 120.00336 * 0.02562 * 16 15 13 38 38 H 1.08996 * 109.68834 * 308.36960 * 21 19 17 39 39 H 1.09010 * 109.67909 * 68.92558 * 21 19 17 40 40 H 1.09001 * 109.68518 * 189.64889 * 22 21 19 41 41 H 1.09006 * 109.68295 * 310.20603 * 22 21 19 42 42 H 1.09006 * 109.25571 * 69.22576 * 23 22 21 43 43 H 1.08997 * 109.25578 * 188.65500 * 23 22 21 44 44 H 1.07999 * 119.72561 * 0.20917 * 25 24 23 45 45 H 1.07998 * 120.11379 * 180.02562 * 26 25 24 46 46 H 1.08004 * 120.11394 * 179.90904 * 27 26 25 47 47 H 1.07998 * 119.73131 * 180.02562 * 28 27 26 48 48 H 1.08998 * 113.61538 * 334.56868 * 30 10 9 49 49 H 1.09003 * 113.61060 * 105.47943 * 30 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4478 2.6526 0.7001 6 1 3.5478 1.4400 0.6999 7 6 2.0102 -1.2023 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0016 10 6 2.0579 -3.6568 0.0039 11 1 3.0653 -3.5622 0.4094 12 6 1.2598 -4.8263 0.6041 13 6 1.8479 -5.6998 -0.5166 14 1 2.7983 -6.1647 -0.2547 15 6 0.8455 -6.6913 -1.1109 16 7 1.5271 -7.5531 -2.0799 17 6 0.8374 -8.5087 -2.7339 18 8 -0.3241 -8.7173 -2.4539 19 6 1.5095 -9.3180 -3.8130 20 1 2.3462 -8.7500 -4.2197 21 6 0.5051 -9.6036 -4.9277 22 6 1.1376 -10.6027 -5.9038 23 6 1.2376 -11.9584 -5.2076 24 6 1.9026 -11.8160 -3.8635 25 6 2.4049 -12.9647 -3.2653 26 6 3.0215 -12.9012 -2.0331 27 6 3.1403 -11.6847 -1.3867 28 6 2.6433 -10.5427 -1.9795 29 6 2.0241 -10.6043 -3.2215 30 6 1.9993 -4.4078 -1.3368 31 1 -0.4849 0.8401 0.0004 32 1 0.3555 -2.3881 -0.0016 33 1 1.5909 -5.1146 1.6017 34 1 0.1794 -4.6972 0.5375 35 1 0.4237 -7.3034 -0.3137 36 1 0.0460 -6.1441 -1.6106 37 1 2.4746 -7.4361 -2.2507 38 1 -0.4035 -10.0302 -4.5029 39 1 0.2664 -8.6785 -5.4526 40 1 0.5141 -10.6919 -6.7933 41 1 2.1334 -10.2603 -6.1857 42 1 0.2364 -12.3674 -5.0716 43 1 1.8219 -12.6385 -5.8273 44 1 2.3122 -13.9153 -3.7694 45 1 3.4099 -13.7986 -1.5747 46 1 3.6207 -11.6288 -0.4211 47 1 2.7368 -9.5928 -1.4742 48 1 1.1212 -4.1650 -1.9352 49 1 2.9276 -4.3582 -1.9059 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086121920.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:04:09 Heat of formation + Delta-G solvation = -19.487847 kcal Electronic energy + Delta-G solvation = -27182.274043 eV Core-core repulsion = 23494.001788 eV Total energy + Delta-G solvation = -3688.272255 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 328.189 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.76722 -40.33761 -39.58715 -36.89204 -36.04257 -35.05582 -33.67840 -32.15651 -31.16755 -30.09978 -28.63589 -26.46189 -25.98975 -25.01221 -23.63444 -23.42463 -22.39424 -21.65268 -20.51345 -20.19421 -19.06087 -18.27675 -17.57785 -17.23654 -16.67798 -16.46404 -16.35358 -16.16215 -15.81925 -15.51977 -15.10611 -15.01183 -14.71612 -14.62570 -14.30451 -14.16480 -13.85811 -13.44596 -13.33065 -13.24098 -13.04298 -13.00582 -12.92349 -12.65929 -12.59925 -12.30673 -12.21186 -12.08232 -11.89271 -11.70156 -11.59114 -11.54628 -11.27027 -11.11916 -10.86069 -10.75964 -10.10274 -9.68806 -9.48039 -8.97970 -7.94678 -5.23060 0.38810 0.45183 1.47157 1.48868 1.56223 1.57285 2.15316 2.56665 2.83373 3.37040 3.52011 3.63859 3.68849 3.74471 3.83633 3.93814 3.95353 4.05995 4.15075 4.23932 4.24871 4.32931 4.36239 4.40356 4.43786 4.53228 4.54917 4.58985 4.71571 4.76538 4.93713 4.96931 4.97786 4.98241 4.99620 5.04020 5.10733 5.14485 5.21699 5.27165 5.34663 5.40019 5.43950 5.52847 5.56382 5.61314 5.68776 5.72673 6.10077 6.27616 6.51726 7.20160 7.32971 8.11418 8.33071 9.28864 Molecular weight = 328.19amu Principal moments of inertia in cm(-1) A = 0.023592 B = 0.002051 C = 0.001973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1186.543132 B =13646.499723 C =14188.116107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.972 5.972 2 C -0.081 4.081 3 Si 0.974 3.026 4 H -0.288 1.288 5 H -0.298 1.298 6 H -0.267 1.267 7 C -0.241 4.241 8 H 0.080 0.920 9 N -0.730 5.730 10 C 0.143 3.857 11 H 0.081 0.919 12 C -0.138 4.138 13 C -0.094 4.094 14 H 0.122 0.878 15 C 0.138 3.862 16 N -0.713 5.713 17 C 0.519 3.481 18 O -0.583 6.583 19 C -0.059 4.059 20 H 0.122 0.878 21 C -0.108 4.108 22 C -0.112 4.112 23 C -0.083 4.083 24 C -0.079 4.079 25 C -0.128 4.128 26 C -0.123 4.123 27 C -0.132 4.132 28 C -0.136 4.136 29 C -0.084 4.084 30 C -0.152 4.152 31 H 0.250 0.750 32 H 0.371 0.629 33 H 0.078 0.922 34 H 0.065 0.935 35 H 0.061 0.939 36 H 0.046 0.954 37 H 0.415 0.585 38 H 0.057 0.943 39 H 0.073 0.927 40 H 0.087 0.913 41 H 0.077 0.923 42 H 0.076 0.924 43 H 0.096 0.904 44 H 0.143 0.857 45 H 0.144 0.856 46 H 0.137 0.863 47 H 0.122 0.878 48 H 0.055 0.945 49 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.180 -29.887 -9.989 32.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.623 5.623 2 C -0.273 4.273 3 Si 0.803 3.197 4 H -0.215 1.215 5 H -0.225 1.225 6 H -0.191 1.191 7 C -0.373 4.373 8 H 0.098 0.902 9 N -0.368 5.368 10 C 0.034 3.966 11 H 0.099 0.901 12 C -0.177 4.177 13 C -0.113 4.113 14 H 0.140 0.860 15 C 0.014 3.986 16 N -0.365 5.365 17 C 0.306 3.694 18 O -0.462 6.462 19 C -0.080 4.080 20 H 0.140 0.860 21 C -0.146 4.146 22 C -0.149 4.149 23 C -0.120 4.120 24 C -0.079 4.079 25 C -0.146 4.146 26 C -0.141 4.141 27 C -0.150 4.150 28 C -0.154 4.154 29 C -0.084 4.084 30 C -0.193 4.193 31 H 0.059 0.941 32 H 0.203 0.797 33 H 0.096 0.904 34 H 0.084 0.916 35 H 0.080 0.920 36 H 0.065 0.935 37 H 0.252 0.748 38 H 0.076 0.924 39 H 0.091 0.909 40 H 0.106 0.894 41 H 0.096 0.904 42 H 0.095 0.905 43 H 0.114 0.886 44 H 0.161 0.839 45 H 0.161 0.839 46 H 0.155 0.845 47 H 0.140 0.860 48 H 0.074 0.926 49 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 8.512 -29.854 -9.765 32.543 hybrid contribution -0.098 1.483 0.281 1.513 sum 8.414 -28.371 -9.483 31.074 Atomic orbital electron populations 1.69830 1.06732 1.25990 1.59778 1.25619 0.96391 1.01308 1.04009 0.85129 0.77759 0.79452 0.77370 1.21512 1.22473 1.19145 1.19737 0.91610 0.85350 1.40620 0.90240 1.42643 1.05348 1.01266 1.87510 1.21957 0.95610 0.83806 0.95234 0.90059 1.23339 0.99892 0.96012 0.98500 1.22464 0.99363 0.92952 0.96570 0.86021 1.21219 0.94871 0.91323 0.91179 1.46064 1.13806 1.34266 1.42396 1.20954 0.86320 0.79697 0.82439 1.90678 1.19300 1.68895 1.67346 1.20232 0.99873 0.93784 0.94104 0.86021 1.21480 0.97326 1.00775 0.95034 1.21544 1.01987 0.93690 0.97698 1.20572 1.00739 0.98668 0.91975 1.19883 0.98350 0.92164 0.97492 1.21466 0.98615 0.98432 0.96091 1.21430 0.98912 0.98400 0.95340 1.21329 1.00200 0.92738 1.00702 1.21421 0.99030 0.99685 0.95235 1.19259 1.00003 0.93640 0.95534 1.23714 1.01114 0.95937 0.98485 0.94136 0.79695 0.90371 0.91625 0.92030 0.93529 0.74778 0.92423 0.90865 0.89419 0.90434 0.90528 0.88571 0.83911 0.83855 0.84547 0.85978 0.92627 0.91222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.35 13.06 21.65 0.28 -60.06 16 2 C -0.08 -4.70 5.50 84.86 0.47 -4.24 16 3 Si 0.97 46.18 29.55 68.60 2.03 48.21 16 4 H -0.29 -13.44 7.11 99.48 0.71 -12.73 16 5 H -0.30 -14.32 7.11 99.48 0.71 -13.61 16 6 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 7 C -0.24 -13.33 9.97 84.04 0.84 -12.49 16 8 H 0.08 4.15 7.83 -2.91 -0.02 4.13 16 9 N -0.73 -36.79 5.40 -320.45 -1.73 -38.52 16 10 C 0.14 5.37 4.48 45.52 0.20 5.57 16 11 H 0.08 2.94 8.10 -2.39 -0.02 2.92 16 12 C -0.14 -4.22 7.39 31.12 0.23 -3.99 16 13 C -0.09 -2.28 3.75 -10.27 -0.04 -2.31 16 14 H 0.12 2.23 8.14 -2.39 -0.02 2.21 16 15 C 0.14 3.49 5.52 86.38 0.48 3.97 16 16 N -0.71 -14.94 4.76 -463.04 -2.20 -17.14 16 17 C 0.52 12.90 5.73 87.65 0.50 13.41 16 18 O -0.58 -20.03 16.12 -3.03 -0.05 -20.08 16 19 C -0.06 -1.09 2.57 -12.39 -0.03 -1.12 16 20 H 0.12 1.63 8.12 -2.39 -0.02 1.61 16 21 C -0.11 -1.92 5.07 30.62 0.16 -1.77 16 22 C -0.11 -1.31 5.98 30.62 0.18 -1.13 16 23 C -0.08 -0.99 5.67 29.74 0.17 -0.82 16 24 C -0.08 -1.29 5.74 -19.86 -0.11 -1.41 16 25 C -0.13 -1.82 9.61 22.36 0.21 -1.60 16 26 C -0.12 -1.73 10.05 22.20 0.22 -1.51 16 27 C -0.13 -2.12 10.05 22.20 0.22 -1.90 16 28 C -0.14 -2.52 9.04 22.36 0.20 -2.31 16 29 C -0.08 -1.58 5.42 -19.86 -0.11 -1.69 16 30 C -0.15 -4.74 7.43 31.12 0.23 -4.51 16 31 H 0.25 15.07 8.31 -92.71 -0.77 14.30 16 32 H 0.37 20.41 7.92 -92.71 -0.73 19.67 16 33 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 34 H 0.07 2.22 8.08 -2.38 -0.02 2.20 16 35 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 36 H 0.05 1.42 7.85 -2.38 -0.02 1.40 16 37 H 0.42 6.13 8.34 -92.71 -0.77 5.35 16 38 H 0.06 1.31 7.51 -2.39 -0.02 1.29 16 39 H 0.07 1.25 8.14 -2.38 -0.02 1.23 16 40 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 41 H 0.08 0.78 8.10 -2.38 -0.02 0.76 16 42 H 0.08 0.95 8.14 -2.38 -0.02 0.93 16 43 H 0.10 0.76 8.13 -2.39 -0.02 0.74 16 44 H 0.14 1.31 8.05 -2.91 -0.02 1.29 16 45 H 0.14 1.30 8.06 -2.91 -0.02 1.27 16 46 H 0.14 1.69 8.06 -2.91 -0.02 1.66 16 47 H 0.12 2.11 6.53 -2.91 -0.02 2.09 16 48 H 0.05 2.01 7.90 -2.39 -0.02 1.99 16 49 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 Total: -1.00 -73.19 393.05 1.80 -71.40 By element: Atomic # 1 Polarization: 36.60 SS G_CDS: -0.56 Total: 36.05 kcal Atomic # 6 Polarization: -23.88 SS G_CDS: 4.03 Total: -19.85 kcal Atomic # 7 Polarization: -112.07 SS G_CDS: -3.65 Total: -115.72 kcal Atomic # 8 Polarization: -20.03 SS G_CDS: -0.05 Total: -20.08 kcal Atomic # 14 Polarization: 46.18 SS G_CDS: 2.03 Total: 48.21 kcal Total: -73.19 1.80 -71.40 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086121920.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.908 kcal (2) G-P(sol) polarization free energy of solvation -73.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.396 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds