Wall clock time and date at job start Tue Mar 31 2020 16:02:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86796 * 120.00246 * 2 1 4 4 H 1.48497 * 109.47442 * 240.00244 * 3 2 1 5 5 H 1.48501 * 109.46941 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47096 * 120.00302 * 3 2 1 7 7 C 1.38814 * 119.99501 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99407 * 179.97438 * 7 2 1 9 9 N 1.36939 * 120.00025 * 359.97438 * 7 2 1 10 10 C 1.46501 * 119.99507 * 180.02562 * 9 7 2 11 11 H 1.08997 * 112.85586 * 23.79942 * 10 9 7 12 12 C 1.53783 * 113.61310 * 155.00030 * 10 9 7 13 13 C 1.53780 * 87.07936 * 139.97601 * 12 10 9 14 14 H 1.09003 * 113.61164 * 89.20287 * 13 12 10 15 15 C 1.53004 * 113.61314 * 220.01657 * 13 12 10 16 16 N 1.46505 * 109.46901 * 185.00311 * 15 13 12 17 17 C 1.34781 * 119.99719 * 179.97438 * 16 15 13 18 18 O 1.21278 * 119.99817 * 0.02562 * 17 16 15 19 19 C 1.50698 * 119.99662 * 179.97438 * 17 16 15 20 20 H 1.09000 * 109.68123 * 59.48927 * 19 17 16 21 21 C 1.53326 * 109.67867 * 180.02562 * 19 17 16 22 22 C 1.52729 * 108.38530 * 189.59024 * 21 19 17 23 23 C 1.50631 * 110.58494 * 308.88197 * 22 21 19 24 24 C 1.38917 * 117.74730 * 197.42815 * 23 22 21 25 25 C 1.37936 * 120.54114 * 180.59478 * 24 23 22 26 26 C 1.38259 * 119.77094 * 359.97438 * 25 24 23 27 27 C 1.37934 * 119.77675 * 359.87567 * 26 25 24 28 28 C 1.37658 * 122.56748 * 17.80961 * 23 22 21 29 29 C 1.50633 * 122.55986 * 359.24210 * 28 23 22 30 30 C 1.53771 * 87.08412 * 334.56632 * 13 12 10 31 31 H 0.97001 * 119.99786 * 359.97438 * 1 2 3 32 32 H 0.97000 * 120.00110 * 0.02562 * 9 7 2 33 33 H 1.09005 * 113.61053 * 25.43053 * 12 10 9 34 34 H 1.08997 * 113.61721 * 254.52832 * 12 10 9 35 35 H 1.08995 * 109.47022 * 65.00332 * 15 13 12 36 36 H 1.08998 * 109.47370 * 305.00458 * 15 13 12 37 37 H 0.96998 * 120.00040 * 359.97438 * 16 15 13 38 38 H 1.08993 * 109.68288 * 309.32093 * 21 19 17 39 39 H 1.09005 * 109.68239 * 69.86967 * 21 19 17 40 40 H 1.09010 * 109.25251 * 69.17128 * 22 21 19 41 41 H 1.08997 * 109.25945 * 188.60123 * 22 21 19 42 42 H 1.07996 * 119.73137 * 0.60636 * 24 23 22 43 43 H 1.07997 * 120.11007 * 180.02562 * 25 24 23 44 44 H 1.08003 * 120.11977 * 179.86064 * 26 25 24 45 45 H 1.08001 * 119.73257 * 180.02562 * 27 26 25 46 46 H 1.09006 * 109.25293 * 257.50625 * 29 28 23 47 47 H 1.09000 * 109.25419 * 138.07662 * 29 28 23 48 48 H 1.09007 * 113.61651 * 139.97940 * 30 13 12 49 49 H 1.09001 * 113.61858 * 270.87960 * 30 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2853 2.7464 0.0006 6 1 3.1041 1.6963 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3254 -2.3881 -0.0005 10 6 2.0579 -3.6568 -0.0005 11 1 3.0655 -3.5640 0.4048 12 6 1.2600 -4.8288 0.5950 13 6 1.8477 -5.6976 -0.5296 14 1 2.7976 -6.1647 -0.2694 15 6 0.8445 -6.6851 -1.1291 16 7 1.5257 -7.5432 -2.1018 17 6 0.8355 -8.4956 -2.7599 18 8 -0.3495 -8.6420 -2.5471 19 6 1.5360 -9.3778 -3.7609 20 1 2.3420 -9.9226 -3.2693 21 6 0.5348 -10.3697 -4.3647 22 6 1.3106 -11.3973 -5.1861 23 6 2.2422 -10.7106 -6.1502 24 6 2.7403 -11.4567 -7.2108 25 6 3.6074 -10.8889 -8.1211 26 6 3.9838 -9.5663 -7.9778 27 6 3.4879 -8.8229 -6.9271 28 6 2.6139 -9.3926 -6.0099 29 6 2.1070 -8.5221 -4.8899 30 6 1.9988 -4.4022 -1.3444 31 1 -0.4850 0.8401 0.0004 32 1 0.3554 -2.3880 -0.0005 33 1 0.1796 -4.7001 0.5280 34 1 1.5914 -5.1213 1.5913 35 1 0.0459 -6.1349 -1.6265 36 1 0.4217 -7.3006 -0.3350 37 1 2.4733 -7.4258 -2.2722 38 1 -0.0099 -10.8734 -3.5662 39 1 -0.1657 -9.8381 -5.0088 40 1 1.8909 -12.0303 -4.5145 41 1 0.6079 -12.0159 -5.7443 42 1 2.4462 -12.4897 -7.3238 43 1 3.9901 -11.4752 -8.9433 44 1 4.6642 -9.1167 -8.6859 45 1 3.7821 -7.7897 -6.8160 46 1 1.3267 -7.8635 -5.2715 47 1 2.9285 -7.9189 -4.5035 48 1 2.9269 -4.3502 -1.9137 49 1 1.1205 -4.1569 -1.9415 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086211161.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:02:42 Heat of formation + Delta-G solvation = -4.368980 kcal Electronic energy + Delta-G solvation = -26796.034572 eV Core-core repulsion = 23108.417920 eV Total energy + Delta-G solvation = -3687.616652 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 328.189 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.75614 -39.54272 -38.48035 -36.04660 -34.71887 -33.35510 -32.86761 -30.82704 -30.23176 -29.28845 -27.27619 -25.10154 -24.60817 -23.87651 -23.15770 -22.46631 -21.06645 -20.76276 -19.60795 -18.99272 -17.35761 -17.02313 -16.75122 -16.11469 -16.02466 -15.29316 -15.09353 -14.85195 -14.65682 -14.52149 -14.14237 -13.98660 -13.64420 -13.56909 -13.28532 -13.18888 -13.00889 -12.67273 -12.35953 -11.93949 -11.85547 -11.79071 -11.71932 -11.39907 -11.33852 -11.22807 -11.12003 -10.83221 -10.73530 -10.53840 -10.24392 -10.16587 -9.83541 -9.76412 -9.47195 -9.06592 -9.02371 -8.87169 -8.86058 -6.97205 -5.78875 -3.07841 1.05213 1.06622 2.56447 3.12750 3.42437 3.43413 3.46872 3.48098 4.18382 4.29656 4.50534 4.57556 4.61350 4.66057 4.75116 4.80442 4.91234 4.96566 5.01292 5.05863 5.15355 5.18086 5.23101 5.31820 5.44618 5.45851 5.49929 5.52014 5.56996 5.70655 5.73608 5.81706 5.84780 5.88014 5.93771 6.00160 6.08513 6.18930 6.21661 6.25426 6.30873 6.34755 6.35404 6.45527 6.58317 6.70907 6.82013 7.10466 7.45783 7.67573 8.17331 8.39667 9.50537 10.08944 10.43086 11.43382 Molecular weight = 328.19amu Principal moments of inertia in cm(-1) A = 0.016831 B = 0.002046 C = 0.001883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1663.155255 B =13681.605425 C =14865.820011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.013 4.013 3 Si 0.908 3.092 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.245 4.245 8 H 0.070 0.930 9 N -0.713 5.713 10 C 0.166 3.834 11 H 0.075 0.925 12 C -0.143 4.143 13 C -0.127 4.127 14 H 0.087 0.913 15 C 0.131 3.869 16 N -0.724 5.724 17 C 0.515 3.485 18 O -0.540 6.540 19 C -0.106 4.106 20 H 0.099 0.901 21 C -0.099 4.099 22 C -0.082 4.082 23 C -0.076 4.076 24 C -0.121 4.121 25 C -0.123 4.123 26 C -0.123 4.123 27 C -0.117 4.117 28 C -0.073 4.073 29 C -0.072 4.072 30 C -0.160 4.160 31 H 0.256 0.744 32 H 0.385 0.615 33 H 0.080 0.920 34 H 0.061 0.939 35 H 0.069 0.931 36 H 0.064 0.936 37 H 0.400 0.600 38 H 0.079 0.921 39 H 0.072 0.928 40 H 0.077 0.923 41 H 0.078 0.922 42 H 0.120 0.880 43 H 0.120 0.880 44 H 0.121 0.879 45 H 0.123 0.877 46 H 0.084 0.916 47 H 0.081 0.919 48 H 0.053 0.947 49 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.566 -25.919 -12.890 29.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.210 4.210 3 Si 0.739 3.261 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.212 1.212 7 C -0.376 4.376 8 H 0.088 0.912 9 N -0.350 5.350 10 C 0.054 3.946 11 H 0.093 0.907 12 C -0.182 4.182 13 C -0.146 4.146 14 H 0.106 0.894 15 C 0.008 3.992 16 N -0.375 5.375 17 C 0.300 3.700 18 O -0.417 6.417 19 C -0.127 4.127 20 H 0.117 0.883 21 C -0.137 4.137 22 C -0.119 4.119 23 C -0.076 4.076 24 C -0.139 4.139 25 C -0.141 4.141 26 C -0.141 4.141 27 C -0.135 4.135 28 C -0.073 4.073 29 C -0.109 4.109 30 C -0.201 4.201 31 H 0.066 0.934 32 H 0.219 0.781 33 H 0.099 0.901 34 H 0.080 0.920 35 H 0.088 0.912 36 H 0.082 0.918 37 H 0.234 0.766 38 H 0.098 0.902 39 H 0.091 0.909 40 H 0.095 0.905 41 H 0.097 0.903 42 H 0.138 0.862 43 H 0.138 0.862 44 H 0.139 0.861 45 H 0.141 0.859 46 H 0.102 0.898 47 H 0.100 0.900 48 H 0.072 0.928 49 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 6.797 -25.807 -12.699 29.555 hybrid contribution 0.727 1.008 -0.235 1.265 sum 7.524 -24.799 -12.934 28.964 Atomic orbital electron populations 1.69654 1.05129 1.25869 1.57344 1.24779 0.95537 0.97805 1.02837 0.86260 0.78527 0.83504 0.77837 1.21252 1.21682 1.21241 1.19255 0.91021 0.84263 1.43073 0.91165 1.42408 1.05761 0.99873 1.87007 1.21519 0.95297 0.85053 0.92775 0.90700 1.23451 1.01044 0.97046 0.96701 1.22636 0.98363 0.94418 0.99211 0.89427 1.21444 0.95312 0.91581 0.90870 1.46097 1.13274 1.35336 1.42820 1.20537 0.87370 0.80685 0.81376 1.90707 1.15479 1.69957 1.65597 1.21332 0.99521 0.96796 0.95080 0.88274 1.21370 0.96752 0.95954 0.99618 1.20528 0.96982 0.97680 0.96668 1.19661 0.98120 0.93392 0.96402 1.21157 0.98144 0.99746 0.94891 1.21074 0.98302 0.95473 0.99242 1.21077 1.00285 0.94530 0.98194 1.21192 0.97464 1.00043 0.94842 1.19514 0.97507 0.93657 0.96662 1.20441 1.01018 0.96742 0.92730 1.23944 1.01309 0.94946 0.99946 0.93391 0.78060 0.90119 0.92026 0.91242 0.91813 0.76645 0.90214 0.90905 0.90453 0.90330 0.86213 0.86196 0.86084 0.85932 0.89804 0.90016 0.92819 0.90365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.13 13.06 55.49 0.72 -27.41 16 2 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 3 Si 0.91 22.26 29.55 -169.99 -5.02 17.24 16 4 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 5 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 6 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 7 C -0.24 -6.75 9.97 -15.06 -0.15 -6.90 16 8 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 9 N -0.71 -17.69 5.40 -52.63 -0.28 -17.97 16 10 C 0.17 3.16 4.48 -67.12 -0.30 2.86 16 11 H 0.08 1.41 8.10 -51.93 -0.42 0.99 16 12 C -0.14 -2.24 7.39 -25.92 -0.19 -2.43 16 13 C -0.13 -1.65 3.75 -89.81 -0.34 -1.99 16 14 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 15 C 0.13 1.68 5.51 -4.04 -0.02 1.66 16 16 N -0.72 -7.76 5.47 -60.29 -0.33 -8.09 16 17 C 0.51 6.10 7.13 -10.98 -0.08 6.03 16 18 O -0.54 -8.64 15.86 5.56 0.09 -8.55 16 19 C -0.11 -0.92 2.55 -91.74 -0.23 -1.15 16 20 H 0.10 0.72 8.10 -51.93 -0.42 0.29 16 21 C -0.10 -0.87 4.71 -26.70 -0.13 -1.00 16 22 C -0.08 -0.58 5.67 -28.06 -0.16 -0.74 16 23 C -0.08 -0.63 5.74 -104.62 -0.60 -1.23 16 24 C -0.12 -0.92 9.61 -39.44 -0.38 -1.30 16 25 C -0.12 -0.90 10.05 -39.68 -0.40 -1.30 16 26 C -0.12 -0.94 10.05 -39.69 -0.40 -1.33 16 27 C -0.12 -0.97 9.61 -39.44 -0.38 -1.34 16 28 C -0.07 -0.63 5.74 -104.62 -0.60 -1.23 16 29 C -0.07 -0.59 4.85 -28.05 -0.14 -0.72 16 30 C -0.16 -2.59 7.43 -25.92 -0.19 -2.78 16 31 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 32 H 0.39 10.21 7.92 -40.82 -0.32 9.89 16 33 H 0.08 1.34 8.08 -51.93 -0.42 0.92 16 34 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 35 H 0.07 1.03 7.84 -51.93 -0.41 0.62 16 36 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.40 3.29 8.16 -40.82 -0.33 2.96 16 38 H 0.08 0.75 7.82 -51.93 -0.41 0.34 16 39 H 0.07 0.73 8.10 -51.93 -0.42 0.31 16 40 H 0.08 0.47 8.14 -51.92 -0.42 0.05 16 41 H 0.08 0.48 8.13 -51.93 -0.42 0.06 16 42 H 0.12 0.68 8.05 -52.49 -0.42 0.26 16 43 H 0.12 0.64 8.06 -52.49 -0.42 0.21 16 44 H 0.12 0.70 8.06 -52.48 -0.42 0.28 16 45 H 0.12 0.85 8.05 -52.49 -0.42 0.43 16 46 H 0.08 0.77 8.11 -51.93 -0.42 0.35 16 47 H 0.08 0.56 7.87 -51.93 -0.41 0.15 16 48 H 0.05 0.81 8.14 -51.92 -0.42 0.39 16 49 H 0.08 1.41 7.90 -51.93 -0.41 1.00 16 LS Contribution 395.58 15.07 5.96 5.96 Total: -1.00 -32.57 395.58 -11.81 -44.38 By element: Atomic # 1 Polarization: 17.99 SS G_CDS: -8.16 Total: 9.82 kcal Atomic # 6 Polarization: -10.59 SS G_CDS: -4.78 Total: -15.37 kcal Atomic # 7 Polarization: -53.58 SS G_CDS: 0.11 Total: -53.47 kcal Atomic # 8 Polarization: -8.64 SS G_CDS: 0.09 Total: -8.55 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.02 Total: 17.24 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -32.57 -11.81 -44.38 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086211161.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.006 kcal (2) G-P(sol) polarization free energy of solvation -32.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.375 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds