Wall clock time and date at job start Tue Mar 31 2020 16:02:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86796 * 120.00246 * 2 1 4 4 H 1.48497 * 109.47442 * 240.00244 * 3 2 1 5 5 H 1.48501 * 109.46941 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47096 * 120.00302 * 3 2 1 7 7 C 1.38814 * 119.99501 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99407 * 179.97438 * 7 2 1 9 9 N 1.36939 * 120.00025 * 359.97438 * 7 2 1 10 10 C 1.46501 * 119.99507 * 180.02562 * 9 7 2 11 11 H 1.08997 * 112.85586 * 23.79942 * 10 9 7 12 12 C 1.53783 * 113.61310 * 155.00030 * 10 9 7 13 13 C 1.53780 * 87.07936 * 139.97601 * 12 10 9 14 14 H 1.09003 * 113.61164 * 89.20287 * 13 12 10 15 15 C 1.53004 * 113.61314 * 220.01657 * 13 12 10 16 16 N 1.46505 * 109.46901 * 185.00311 * 15 13 12 17 17 C 1.34781 * 119.99719 * 179.97438 * 16 15 13 18 18 O 1.21278 * 119.99817 * 0.02562 * 17 16 15 19 19 C 1.50698 * 119.99662 * 179.97438 * 17 16 15 20 20 H 1.09000 * 109.68123 * 59.48927 * 19 17 16 21 21 C 1.53326 * 109.67867 * 180.02562 * 19 17 16 22 22 C 1.52729 * 108.38530 * 189.59024 * 21 19 17 23 23 C 1.50631 * 110.58494 * 308.88197 * 22 21 19 24 24 C 1.38917 * 117.74730 * 197.42815 * 23 22 21 25 25 C 1.37936 * 120.54114 * 180.59478 * 24 23 22 26 26 C 1.38259 * 119.77094 * 359.97438 * 25 24 23 27 27 C 1.37934 * 119.77675 * 359.87567 * 26 25 24 28 28 C 1.37658 * 122.56748 * 17.80961 * 23 22 21 29 29 C 1.50633 * 122.55986 * 359.24210 * 28 23 22 30 30 C 1.53771 * 87.08412 * 334.56632 * 13 12 10 31 31 H 0.97001 * 119.99786 * 359.97438 * 1 2 3 32 32 H 0.97000 * 120.00110 * 0.02562 * 9 7 2 33 33 H 1.09005 * 113.61053 * 25.43053 * 12 10 9 34 34 H 1.08997 * 113.61721 * 254.52832 * 12 10 9 35 35 H 1.08995 * 109.47022 * 65.00332 * 15 13 12 36 36 H 1.08998 * 109.47370 * 305.00458 * 15 13 12 37 37 H 0.96998 * 120.00040 * 359.97438 * 16 15 13 38 38 H 1.08993 * 109.68288 * 309.32093 * 21 19 17 39 39 H 1.09005 * 109.68239 * 69.86967 * 21 19 17 40 40 H 1.09010 * 109.25251 * 69.17128 * 22 21 19 41 41 H 1.08997 * 109.25945 * 188.60123 * 22 21 19 42 42 H 1.07996 * 119.73137 * 0.60636 * 24 23 22 43 43 H 1.07997 * 120.11007 * 180.02562 * 25 24 23 44 44 H 1.08003 * 120.11977 * 179.86064 * 26 25 24 45 45 H 1.08001 * 119.73257 * 180.02562 * 27 26 25 46 46 H 1.09006 * 109.25293 * 257.50625 * 29 28 23 47 47 H 1.09000 * 109.25419 * 138.07662 * 29 28 23 48 48 H 1.09007 * 113.61651 * 139.97940 * 30 13 12 49 49 H 1.09001 * 113.61858 * 270.87960 * 30 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2853 2.7464 0.0006 6 1 3.1041 1.6963 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3254 -2.3881 -0.0005 10 6 2.0579 -3.6568 -0.0005 11 1 3.0655 -3.5640 0.4048 12 6 1.2600 -4.8288 0.5950 13 6 1.8477 -5.6976 -0.5296 14 1 2.7976 -6.1647 -0.2694 15 6 0.8445 -6.6851 -1.1291 16 7 1.5257 -7.5432 -2.1018 17 6 0.8355 -8.4956 -2.7599 18 8 -0.3495 -8.6420 -2.5471 19 6 1.5360 -9.3778 -3.7609 20 1 2.3420 -9.9226 -3.2693 21 6 0.5348 -10.3697 -4.3647 22 6 1.3106 -11.3973 -5.1861 23 6 2.2422 -10.7106 -6.1502 24 6 2.7403 -11.4567 -7.2108 25 6 3.6074 -10.8889 -8.1211 26 6 3.9838 -9.5663 -7.9778 27 6 3.4879 -8.8229 -6.9271 28 6 2.6139 -9.3926 -6.0099 29 6 2.1070 -8.5221 -4.8899 30 6 1.9988 -4.4022 -1.3444 31 1 -0.4850 0.8401 0.0004 32 1 0.3554 -2.3880 -0.0005 33 1 0.1796 -4.7001 0.5280 34 1 1.5914 -5.1213 1.5913 35 1 0.0459 -6.1349 -1.6265 36 1 0.4217 -7.3006 -0.3350 37 1 2.4733 -7.4258 -2.2722 38 1 -0.0099 -10.8734 -3.5662 39 1 -0.1657 -9.8381 -5.0088 40 1 1.8909 -12.0303 -4.5145 41 1 0.6079 -12.0159 -5.7443 42 1 2.4462 -12.4897 -7.3238 43 1 3.9901 -11.4752 -8.9433 44 1 4.6642 -9.1167 -8.6859 45 1 3.7821 -7.7897 -6.8160 46 1 1.3267 -7.8635 -5.2715 47 1 2.9285 -7.9189 -4.5035 48 1 2.9269 -4.3502 -1.9137 49 1 1.1205 -4.1569 -1.9415 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086211161.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:02:41 Heat of formation + Delta-G solvation = -22.991079 kcal Electronic energy + Delta-G solvation = -26796.842087 eV Core-core repulsion = 23108.417920 eV Total energy + Delta-G solvation = -3688.424166 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 328.189 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.52138 -40.43647 -39.71847 -36.74191 -36.04142 -35.02287 -33.52026 -32.20901 -31.35545 -29.98276 -28.46745 -26.44798 -25.93853 -25.08683 -23.94365 -23.02869 -22.40776 -21.65448 -20.58673 -20.12013 -19.03986 -18.18819 -17.42836 -17.06637 -16.82832 -16.59167 -16.23651 -15.86328 -15.70713 -15.44326 -15.24989 -15.00787 -14.79729 -14.64814 -14.43661 -14.03403 -13.82893 -13.53449 -13.36683 -13.22960 -13.01087 -12.97128 -12.90465 -12.61650 -12.42525 -12.32524 -12.24695 -12.08748 -11.99063 -11.74483 -11.57334 -11.53639 -11.35334 -11.08333 -10.82495 -10.67151 -10.05476 -9.62240 -9.43146 -8.97144 -7.93967 -5.22341 0.48359 0.50741 1.47264 1.50348 1.56433 1.62100 2.20738 2.57203 2.87252 3.37461 3.48335 3.64592 3.72790 3.76454 3.84582 3.93404 4.05108 4.07843 4.14338 4.25249 4.26723 4.34277 4.38215 4.42284 4.44809 4.55667 4.57601 4.60712 4.72821 4.79196 4.89205 4.90525 4.97157 4.99054 5.00267 5.06576 5.11163 5.17377 5.23387 5.27037 5.33407 5.38353 5.45657 5.54056 5.63284 5.67320 5.74623 5.77093 6.16968 6.28128 6.58049 7.26748 7.33478 8.12277 8.33807 9.29321 Molecular weight = 328.19amu Principal moments of inertia in cm(-1) A = 0.016831 B = 0.002046 C = 0.001883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1663.155255 B =13681.605425 C =14865.820011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.972 5.972 2 C -0.082 4.082 3 Si 0.974 3.026 4 H -0.277 1.277 5 H -0.299 1.299 6 H -0.276 1.276 7 C -0.242 4.242 8 H 0.080 0.920 9 N -0.730 5.730 10 C 0.143 3.857 11 H 0.081 0.919 12 C -0.138 4.138 13 C -0.094 4.094 14 H 0.123 0.877 15 C 0.137 3.863 16 N -0.712 5.712 17 C 0.513 3.487 18 O -0.586 6.586 19 C -0.096 4.096 20 H 0.123 0.877 21 C -0.098 4.098 22 C -0.075 4.075 23 C -0.088 4.088 24 C -0.129 4.129 25 C -0.129 4.129 26 C -0.132 4.132 27 C -0.130 4.130 28 C -0.088 4.088 29 C -0.067 4.067 30 C -0.152 4.152 31 H 0.250 0.750 32 H 0.371 0.629 33 H 0.065 0.935 34 H 0.078 0.922 35 H 0.044 0.956 36 H 0.064 0.936 37 H 0.415 0.585 38 H 0.071 0.929 39 H 0.053 0.947 40 H 0.092 0.908 41 H 0.088 0.912 42 H 0.137 0.863 43 H 0.139 0.861 44 H 0.136 0.864 45 H 0.130 0.870 46 H 0.067 0.933 47 H 0.098 0.902 48 H 0.069 0.931 49 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.300 -27.725 -13.419 32.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.623 5.623 2 C -0.273 4.273 3 Si 0.803 3.197 4 H -0.203 1.203 5 H -0.225 1.225 6 H -0.202 1.202 7 C -0.374 4.374 8 H 0.097 0.903 9 N -0.368 5.368 10 C 0.033 3.967 11 H 0.099 0.901 12 C -0.177 4.177 13 C -0.113 4.113 14 H 0.141 0.859 15 C 0.013 3.987 16 N -0.364 5.364 17 C 0.301 3.699 18 O -0.467 6.467 19 C -0.117 4.117 20 H 0.141 0.859 21 C -0.136 4.136 22 C -0.112 4.112 23 C -0.088 4.088 24 C -0.147 4.147 25 C -0.147 4.147 26 C -0.150 4.150 27 C -0.148 4.148 28 C -0.088 4.088 29 C -0.104 4.104 30 C -0.193 4.193 31 H 0.059 0.941 32 H 0.203 0.797 33 H 0.083 0.917 34 H 0.097 0.903 35 H 0.062 0.938 36 H 0.082 0.918 37 H 0.252 0.748 38 H 0.090 0.910 39 H 0.072 0.928 40 H 0.110 0.890 41 H 0.106 0.894 42 H 0.155 0.845 43 H 0.157 0.843 44 H 0.154 0.846 45 H 0.148 0.852 46 H 0.085 0.915 47 H 0.116 0.884 48 H 0.087 0.913 49 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 9.615 -27.660 -13.237 32.136 hybrid contribution -0.101 1.484 -0.100 1.491 sum 9.514 -26.176 -13.337 30.880 Atomic orbital electron populations 1.69825 1.06719 1.26050 1.59722 1.25620 0.96391 1.01311 1.04011 0.85199 0.77141 0.79110 0.78251 1.20328 1.22503 1.20233 1.19703 0.91606 0.85376 1.40735 0.90253 1.42637 1.05332 1.01264 1.87536 1.21970 0.95625 0.83823 0.95263 0.90060 1.23336 0.99859 0.96014 0.98534 1.22464 0.99436 0.92957 0.96441 0.85925 1.21210 0.94812 0.91571 0.91085 1.45956 1.13966 1.34486 1.41996 1.21109 0.86863 0.80643 0.81319 1.90691 1.17618 1.71271 1.67083 1.21309 0.99662 0.96270 0.94426 0.85906 1.21328 0.96711 0.96296 0.99281 1.20499 0.96929 0.97165 0.96563 1.19856 0.98412 0.93531 0.96987 1.21419 0.98033 1.00641 0.94600 1.21383 0.98009 0.95618 0.99675 1.21353 1.00488 0.94859 0.98325 1.21385 0.97661 1.00637 0.95141 1.19602 0.98108 0.94025 0.97045 1.20394 1.00968 0.96553 0.92512 1.23712 1.01030 0.96064 0.98488 0.94147 0.79713 0.91666 0.90317 0.93806 0.91775 0.74754 0.91043 0.92838 0.88980 0.89404 0.84499 0.84302 0.84580 0.85196 0.91456 0.88394 0.91253 0.92774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.31 13.06 21.65 0.28 -60.02 16 2 C -0.08 -4.70 5.50 84.86 0.47 -4.24 16 3 Si 0.97 46.13 29.55 68.60 2.03 48.16 16 4 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 5 H -0.30 -14.38 7.11 99.48 0.71 -13.67 16 6 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 7 C -0.24 -13.37 9.97 84.03 0.84 -12.54 16 8 H 0.08 4.13 7.83 -2.91 -0.02 4.11 16 9 N -0.73 -36.71 5.40 -320.44 -1.73 -38.44 16 10 C 0.14 5.31 4.48 45.52 0.20 5.51 16 11 H 0.08 2.92 8.10 -2.39 -0.02 2.90 16 12 C -0.14 -4.16 7.39 31.12 0.23 -3.93 16 13 C -0.09 -2.21 3.75 -10.27 -0.04 -2.25 16 14 H 0.12 2.16 8.14 -2.39 -0.02 2.14 16 15 C 0.14 3.36 5.51 86.38 0.48 3.84 16 16 N -0.71 -13.95 5.47 -463.05 -2.53 -16.48 16 17 C 0.51 11.74 7.13 87.66 0.63 12.37 16 18 O -0.59 -18.99 15.86 -3.02 -0.05 -19.04 16 19 C -0.10 -1.52 2.55 -11.52 -0.03 -1.55 16 20 H 0.12 1.42 8.10 -2.39 -0.02 1.40 16 21 C -0.10 -1.67 4.71 30.61 0.14 -1.53 16 22 C -0.07 -0.93 5.67 29.74 0.17 -0.76 16 23 C -0.09 -1.30 5.74 -19.86 -0.11 -1.42 16 24 C -0.13 -1.69 9.61 22.36 0.21 -1.47 16 25 C -0.13 -1.62 10.05 22.20 0.22 -1.40 16 26 C -0.13 -1.78 10.05 22.20 0.22 -1.56 16 27 C -0.13 -1.96 9.61 22.36 0.21 -1.74 16 28 C -0.09 -1.39 5.74 -19.86 -0.11 -1.50 16 29 C -0.07 -1.01 4.85 29.74 0.14 -0.86 16 30 C -0.15 -4.72 7.43 31.12 0.23 -4.48 16 31 H 0.25 15.10 8.31 -92.71 -0.77 14.32 16 32 H 0.37 20.38 7.92 -92.71 -0.73 19.64 16 33 H 0.06 2.19 8.08 -2.38 -0.02 2.17 16 34 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 35 H 0.04 1.32 7.84 -2.39 -0.02 1.30 16 36 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 37 H 0.42 5.51 8.16 -92.71 -0.76 4.76 16 38 H 0.07 1.33 7.82 -2.39 -0.02 1.31 16 39 H 0.05 1.10 8.10 -2.38 -0.02 1.08 16 40 H 0.09 0.89 8.14 -2.38 -0.02 0.87 16 41 H 0.09 0.93 8.13 -2.39 -0.02 0.91 16 42 H 0.14 1.22 8.05 -2.91 -0.02 1.20 16 43 H 0.14 1.13 8.06 -2.91 -0.02 1.10 16 44 H 0.14 1.31 8.06 -2.91 -0.02 1.29 16 45 H 0.13 1.63 8.05 -2.91 -0.02 1.61 16 46 H 0.07 1.23 8.11 -2.38 -0.02 1.21 16 47 H 0.10 1.11 7.87 -2.39 -0.02 1.09 16 48 H 0.07 1.93 8.14 -2.38 -0.02 1.91 16 49 H 0.05 1.96 7.90 -2.39 -0.02 1.94 16 Total: -1.00 -72.29 395.58 1.56 -70.73 By element: Atomic # 1 Polarization: 35.16 SS G_CDS: -0.55 Total: 34.61 kcal Atomic # 6 Polarization: -23.63 SS G_CDS: 4.11 Total: -19.52 kcal Atomic # 7 Polarization: -110.97 SS G_CDS: -3.98 Total: -114.95 kcal Atomic # 8 Polarization: -18.99 SS G_CDS: -0.05 Total: -19.04 kcal Atomic # 14 Polarization: 46.13 SS G_CDS: 2.03 Total: 48.16 kcal Total: -72.29 1.56 -70.73 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086211161.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.743 kcal (2) G-P(sol) polarization free energy of solvation -72.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.734 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds