Wall clock time and date at job start Tue Mar 31 2020 16:02:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86800 * 120.00298 * 2 1 4 4 H 1.48497 * 109.47144 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.46882 * 300.00246 * 3 2 1 6 6 H 1.48499 * 109.47118 * 60.00134 * 3 2 1 7 7 C 1.38823 * 119.99745 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99952 * 179.97438 * 7 2 1 9 9 N 1.36936 * 120.00166 * 359.97438 * 7 2 1 10 10 C 1.46495 * 120.00225 * 179.97438 * 9 7 2 11 11 H 1.09001 * 112.84629 * 23.80385 * 10 9 7 12 12 C 1.53782 * 113.61500 * 155.00091 * 10 9 7 13 13 C 1.53779 * 87.08059 * 140.06640 * 12 10 9 14 14 H 1.09003 * 113.61488 * 89.19532 * 13 12 10 15 15 C 1.53002 * 113.61647 * 220.01851 * 13 12 10 16 16 N 1.46504 * 109.47219 * 184.99941 * 15 13 12 17 17 C 1.34770 * 119.99935 * 179.97438 * 16 15 13 18 18 O 1.21287 * 120.00121 * 0.02562 * 17 16 15 19 19 C 1.50697 * 120.00465 * 179.97438 * 17 16 15 20 20 H 1.09003 * 109.70756 * 299.46882 * 19 17 16 21 21 C 1.53322 * 109.68629 * 178.92875 * 19 17 16 22 22 C 1.52737 * 108.38229 * 170.39601 * 21 19 17 23 23 C 1.50634 * 110.58801 * 51.09059 * 22 21 19 24 24 C 1.38917 * 117.75004 * 162.45575 * 23 22 21 25 25 C 1.37924 * 120.54324 * 179.64613 * 24 23 22 26 26 C 1.38273 * 119.77255 * 359.73580 * 25 24 23 27 27 C 1.37927 * 119.76788 * 0.69645 * 26 25 24 28 28 C 1.37655 * 122.56679 * 342.29446 * 23 22 21 29 29 C 1.50636 * 122.56414 * 0.61774 * 28 23 22 30 30 C 1.53786 * 113.69194 * 252.54113 * 10 9 7 31 31 H 0.96994 * 119.99611 * 0.02562 * 1 2 3 32 32 H 0.97008 * 119.99560 * 0.02562 * 9 7 2 33 33 H 1.08996 * 113.61602 * 25.52125 * 12 10 9 34 34 H 1.08996 * 113.61254 * 254.61566 * 12 10 9 35 35 H 1.09001 * 109.46753 * 65.00065 * 15 13 12 36 36 H 1.09001 * 109.46800 * 304.99771 * 15 13 12 37 37 H 0.97001 * 119.99891 * 0.02562 * 16 15 13 38 38 H 1.09002 * 109.68174 * 290.11627 * 21 19 17 39 39 H 1.08999 * 109.68290 * 50.67226 * 21 19 17 40 40 H 1.08993 * 109.25568 * 171.37936 * 22 21 19 41 41 H 1.09008 * 109.25073 * 290.84365 * 22 21 19 42 42 H 1.07995 * 119.73002 * 359.62950 * 24 23 22 43 43 H 1.08003 * 120.11808 * 180.02562 * 25 24 23 44 44 H 1.08003 * 120.11644 * 180.41792 * 26 25 24 45 45 H 1.08002 * 119.73040 * 179.61265 * 27 26 25 46 46 H 1.09002 * 109.25633 * 102.58639 * 29 28 23 47 47 H 1.09002 * 109.24932 * 222.01084 * 29 28 23 48 48 H 1.08996 * 113.61811 * 105.45888 * 30 10 9 49 49 H 1.09004 * 113.61066 * 334.54749 * 30 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3463 -0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8916 2.3964 1.2125 7 6 2.0103 -1.2023 0.0005 8 1 3.0903 -1.2023 0.0001 9 7 1.3256 -2.3882 0.0016 10 6 2.0580 -3.6569 0.0016 11 1 3.0658 -3.5637 0.4062 12 6 1.2605 -4.8286 0.5982 13 6 1.8492 -5.6984 -0.5250 14 1 2.7993 -6.1646 -0.2639 15 6 0.8469 -6.6873 -1.1237 16 7 1.5289 -7.5461 -2.0951 17 6 0.8396 -8.4996 -2.7523 18 8 -0.3454 -8.6465 -2.5399 19 6 1.5409 -9.3827 -3.7520 20 1 1.9564 -8.7723 -4.5538 21 6 0.5467 -10.3939 -4.3349 22 6 1.2171 -11.1078 -5.5069 23 6 2.5638 -11.6458 -5.0992 24 6 3.1394 -12.6235 -5.9008 25 6 4.3741 -13.1511 -5.5852 26 6 5.0477 -12.6999 -4.4651 27 6 4.4737 -11.7358 -3.6630 28 6 3.2301 -11.2035 -3.9787 29 6 2.6622 -10.1543 -3.0591 30 6 2.0000 -4.4039 -1.3414 31 1 -0.4849 0.8400 -0.0004 32 1 0.3555 -2.3881 0.0016 33 1 0.1801 -4.7007 0.5307 34 1 1.5918 -5.1196 1.5950 35 1 0.0481 -6.1380 -1.6221 36 1 0.4242 -7.3021 -0.3290 37 1 2.4767 -7.4288 -2.2647 38 1 0.2720 -11.1210 -3.5707 39 1 -0.3448 -9.8728 -4.6839 40 1 0.5847 -11.9328 -5.8346 41 1 1.3458 -10.4048 -6.3300 42 1 2.6158 -12.9735 -6.7780 43 1 4.8155 -13.9106 -6.2135 44 1 6.0178 -13.1044 -4.2166 45 1 4.9976 -11.3884 -2.7847 46 1 2.2676 -10.6359 -2.1644 47 1 3.4530 -9.4604 -2.7739 48 1 2.9282 -4.3521 -1.9103 49 1 1.1217 -4.1599 -1.9391 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086211162.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:02:45 Heat of formation + Delta-G solvation = -4.546776 kcal Electronic energy + Delta-G solvation = -26692.656295 eV Core-core repulsion = 23005.031933 eV Total energy + Delta-G solvation = -3687.624361 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 328.189 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.77536 -39.55578 -38.48321 -36.06437 -34.72375 -33.36443 -32.89092 -30.84584 -30.23871 -29.31142 -27.28293 -25.10143 -24.62791 -23.88749 -23.17346 -22.50035 -21.06897 -20.77672 -19.60248 -19.02243 -17.35438 -17.02221 -16.77729 -16.13557 -16.04474 -15.32527 -15.09155 -14.82445 -14.66468 -14.60811 -14.12126 -14.00822 -13.64050 -13.59217 -13.32114 -13.22643 -12.96379 -12.72894 -12.36437 -11.94139 -11.86035 -11.80948 -11.75304 -11.40617 -11.33708 -11.24207 -11.13930 -10.86194 -10.75246 -10.52963 -10.24429 -10.11547 -9.83685 -9.77195 -9.47510 -9.09901 -9.02745 -8.89207 -8.88195 -6.97322 -5.79479 -3.08299 1.01874 1.03349 2.56570 3.12201 3.40071 3.41524 3.47024 3.49459 4.16144 4.27304 4.49784 4.57216 4.58208 4.63675 4.72939 4.76445 4.89882 4.96214 4.99791 5.05856 5.13111 5.15592 5.22705 5.29727 5.41544 5.45628 5.48542 5.49604 5.54698 5.67663 5.72362 5.81799 5.83706 5.87208 5.93277 5.98914 6.08219 6.15779 6.18096 6.25306 6.30734 6.31666 6.35333 6.45370 6.58371 6.67540 6.81861 7.10278 7.45601 7.68405 8.17147 8.39086 9.50165 10.08607 10.42673 11.42950 Molecular weight = 328.19amu Principal moments of inertia in cm(-1) A = 0.022547 B = 0.001850 C = 0.001798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1241.572873 B =15131.874019 C =15569.033276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.014 4.014 3 Si 0.907 3.093 4 H -0.280 1.280 5 H -0.292 1.292 6 H -0.291 1.291 7 C -0.244 4.244 8 H 0.072 0.928 9 N -0.713 5.713 10 C 0.166 3.834 11 H 0.075 0.925 12 C -0.142 4.142 13 C -0.127 4.127 14 H 0.088 0.912 15 C 0.131 3.869 16 N -0.724 5.724 17 C 0.515 3.485 18 O -0.541 6.541 19 C -0.107 4.107 20 H 0.101 0.899 21 C -0.099 4.099 22 C -0.083 4.083 23 C -0.074 4.074 24 C -0.121 4.121 25 C -0.123 4.123 26 C -0.123 4.123 27 C -0.118 4.118 28 C -0.074 4.074 29 C -0.071 4.071 30 C -0.161 4.161 31 H 0.255 0.745 32 H 0.385 0.615 33 H 0.080 0.920 34 H 0.061 0.939 35 H 0.069 0.931 36 H 0.064 0.936 37 H 0.400 0.600 38 H 0.071 0.929 39 H 0.080 0.920 40 H 0.079 0.921 41 H 0.078 0.922 42 H 0.120 0.880 43 H 0.120 0.880 44 H 0.121 0.879 45 H 0.122 0.878 46 H 0.082 0.918 47 H 0.081 0.919 48 H 0.053 0.947 49 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.377 -28.295 -10.314 31.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.210 4.210 3 Si 0.738 3.262 4 H -0.205 1.205 5 H -0.219 1.219 6 H -0.218 1.218 7 C -0.375 4.375 8 H 0.090 0.910 9 N -0.351 5.351 10 C 0.054 3.946 11 H 0.093 0.907 12 C -0.182 4.182 13 C -0.146 4.146 14 H 0.106 0.894 15 C 0.008 3.992 16 N -0.375 5.375 17 C 0.301 3.699 18 O -0.417 6.417 19 C -0.128 4.128 20 H 0.119 0.881 21 C -0.137 4.137 22 C -0.120 4.120 23 C -0.074 4.074 24 C -0.139 4.139 25 C -0.141 4.141 26 C -0.141 4.141 27 C -0.136 4.136 28 C -0.074 4.074 29 C -0.108 4.108 30 C -0.202 4.202 31 H 0.065 0.935 32 H 0.219 0.781 33 H 0.099 0.901 34 H 0.080 0.920 35 H 0.088 0.912 36 H 0.082 0.918 37 H 0.234 0.766 38 H 0.090 0.910 39 H 0.099 0.901 40 H 0.097 0.903 41 H 0.097 0.903 42 H 0.138 0.862 43 H 0.138 0.862 44 H 0.139 0.861 45 H 0.140 0.860 46 H 0.100 0.900 47 H 0.099 0.901 48 H 0.072 0.928 49 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 7.625 -28.192 -10.124 30.910 hybrid contribution 0.734 0.937 -0.158 1.201 sum 8.359 -27.255 -10.282 30.305 Atomic orbital electron populations 1.69673 1.05136 1.25636 1.57521 1.24783 0.95536 0.97815 1.02872 0.86116 0.78772 0.84088 0.77195 1.20539 1.21865 1.21841 1.19351 0.91094 0.84242 1.42803 0.91043 1.42421 1.05777 0.99897 1.86975 1.21519 0.95300 0.85050 0.92778 0.90702 1.23447 1.01041 0.97029 0.96705 1.22637 0.98361 0.94411 0.99210 0.89427 1.21445 0.95309 0.91560 0.90895 1.46093 1.13253 1.35231 1.42939 1.20525 0.87355 0.80588 0.81472 1.90709 1.15530 1.70207 1.65302 1.21342 0.96970 0.96780 0.97754 0.88113 1.21369 0.97504 0.97315 0.97481 1.20541 0.92657 1.00268 0.98493 1.19675 0.96396 0.96657 0.94708 1.21167 0.95964 0.97141 0.99620 1.21079 0.95297 1.00131 0.97545 1.21070 0.99945 0.97676 0.95453 1.21163 0.95130 0.97446 0.99857 1.19510 0.94645 0.97745 0.95533 1.20430 0.96951 0.95946 0.97475 1.23949 1.01328 0.94969 0.99941 0.93495 0.78065 0.90116 0.92021 0.91238 0.91806 0.76643 0.91000 0.90103 0.90296 0.90344 0.86169 0.86179 0.86112 0.86038 0.89960 0.90099 0.92805 0.90364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.15 13.06 55.49 0.72 -27.42 16 2 C -0.01 -0.40 5.50 -17.42 -0.10 -0.50 16 3 Si 0.91 22.28 29.55 -169.99 -5.02 17.25 16 4 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 5 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 6 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 7 C -0.24 -6.72 9.97 -15.06 -0.15 -6.87 16 8 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 9 N -0.71 -17.70 5.40 -52.63 -0.28 -17.99 16 10 C 0.17 3.16 4.48 -67.12 -0.30 2.86 16 11 H 0.07 1.42 8.10 -51.93 -0.42 0.99 16 12 C -0.14 -2.23 7.39 -25.92 -0.19 -2.43 16 13 C -0.13 -1.65 3.75 -89.80 -0.34 -1.98 16 14 H 0.09 0.98 8.14 -51.93 -0.42 0.55 16 15 C 0.13 1.68 5.51 -4.04 -0.02 1.66 16 16 N -0.72 -7.76 5.46 -60.29 -0.33 -8.09 16 17 C 0.51 6.10 7.14 -10.99 -0.08 6.02 16 18 O -0.54 -8.63 15.85 5.55 0.09 -8.55 16 19 C -0.11 -0.93 2.55 -91.74 -0.23 -1.16 16 20 H 0.10 0.78 8.10 -51.93 -0.42 0.36 16 21 C -0.10 -0.87 4.72 -26.70 -0.13 -0.99 16 22 C -0.08 -0.59 5.67 -28.05 -0.16 -0.75 16 23 C -0.07 -0.60 5.74 -104.62 -0.60 -1.20 16 24 C -0.12 -0.89 9.61 -39.44 -0.38 -1.26 16 25 C -0.12 -0.85 10.05 -39.68 -0.40 -1.25 16 26 C -0.12 -0.87 10.05 -39.68 -0.40 -1.27 16 27 C -0.12 -0.88 9.61 -39.45 -0.38 -1.26 16 28 C -0.07 -0.60 5.74 -104.62 -0.60 -1.20 16 29 C -0.07 -0.53 4.82 -28.05 -0.14 -0.66 16 30 C -0.16 -2.61 7.43 -25.91 -0.19 -2.80 16 31 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 32 H 0.39 10.22 7.92 -40.82 -0.32 9.89 16 33 H 0.08 1.34 8.08 -51.93 -0.42 0.92 16 34 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 35 H 0.07 1.03 7.84 -51.93 -0.41 0.63 16 36 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.40 3.29 8.08 -40.82 -0.33 2.96 16 38 H 0.07 0.69 8.10 -51.93 -0.42 0.27 16 39 H 0.08 0.78 7.80 -51.93 -0.41 0.38 16 40 H 0.08 0.48 8.12 -51.93 -0.42 0.06 16 41 H 0.08 0.51 8.14 -51.92 -0.42 0.08 16 42 H 0.12 0.67 8.05 -52.49 -0.42 0.25 16 43 H 0.12 0.60 8.06 -52.48 -0.42 0.17 16 44 H 0.12 0.62 8.06 -52.48 -0.42 0.20 16 45 H 0.12 0.72 8.05 -52.49 -0.42 0.29 16 46 H 0.08 0.65 8.11 -51.93 -0.42 0.23 16 47 H 0.08 0.48 7.81 -51.93 -0.41 0.08 16 48 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 49 H 0.08 1.41 7.90 -51.93 -0.41 1.00 16 LS Contribution 395.42 15.07 5.96 5.96 Total: -1.00 -32.68 395.42 -11.80 -44.48 By element: Atomic # 1 Polarization: 17.54 SS G_CDS: -8.16 Total: 9.38 kcal Atomic # 6 Polarization: -10.25 SS G_CDS: -4.78 Total: -15.03 kcal Atomic # 7 Polarization: -53.61 SS G_CDS: 0.11 Total: -53.50 kcal Atomic # 8 Polarization: -8.63 SS G_CDS: 0.09 Total: -8.55 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.02 Total: 17.25 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -32.68 -11.80 -44.48 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086211162.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.930 kcal (2) G-P(sol) polarization free energy of solvation -32.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.477 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds