Wall clock time and date at job start Tue Mar 31 2020 16:02:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86800 * 120.00298 * 2 1 4 4 H 1.48497 * 109.47144 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.46882 * 300.00246 * 3 2 1 6 6 H 1.48499 * 109.47118 * 60.00134 * 3 2 1 7 7 C 1.38823 * 119.99745 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99952 * 179.97438 * 7 2 1 9 9 N 1.36936 * 120.00166 * 359.97438 * 7 2 1 10 10 C 1.46495 * 120.00225 * 179.97438 * 9 7 2 11 11 H 1.09001 * 112.84629 * 23.80385 * 10 9 7 12 12 C 1.53782 * 113.61500 * 155.00091 * 10 9 7 13 13 C 1.53779 * 87.08059 * 140.06640 * 12 10 9 14 14 H 1.09003 * 113.61488 * 89.19532 * 13 12 10 15 15 C 1.53002 * 113.61647 * 220.01851 * 13 12 10 16 16 N 1.46504 * 109.47219 * 184.99941 * 15 13 12 17 17 C 1.34770 * 119.99935 * 179.97438 * 16 15 13 18 18 O 1.21287 * 120.00121 * 0.02562 * 17 16 15 19 19 C 1.50697 * 120.00465 * 179.97438 * 17 16 15 20 20 H 1.09003 * 109.70756 * 299.46882 * 19 17 16 21 21 C 1.53322 * 109.68629 * 178.92875 * 19 17 16 22 22 C 1.52737 * 108.38229 * 170.39601 * 21 19 17 23 23 C 1.50634 * 110.58801 * 51.09059 * 22 21 19 24 24 C 1.38917 * 117.75004 * 162.45575 * 23 22 21 25 25 C 1.37924 * 120.54324 * 179.64613 * 24 23 22 26 26 C 1.38273 * 119.77255 * 359.73580 * 25 24 23 27 27 C 1.37927 * 119.76788 * 0.69645 * 26 25 24 28 28 C 1.37655 * 122.56679 * 342.29446 * 23 22 21 29 29 C 1.50636 * 122.56414 * 0.61774 * 28 23 22 30 30 C 1.53786 * 113.69194 * 252.54113 * 10 9 7 31 31 H 0.96994 * 119.99611 * 0.02562 * 1 2 3 32 32 H 0.97008 * 119.99560 * 0.02562 * 9 7 2 33 33 H 1.08996 * 113.61602 * 25.52125 * 12 10 9 34 34 H 1.08996 * 113.61254 * 254.61566 * 12 10 9 35 35 H 1.09001 * 109.46753 * 65.00065 * 15 13 12 36 36 H 1.09001 * 109.46800 * 304.99771 * 15 13 12 37 37 H 0.97001 * 119.99891 * 0.02562 * 16 15 13 38 38 H 1.09002 * 109.68174 * 290.11627 * 21 19 17 39 39 H 1.08999 * 109.68290 * 50.67226 * 21 19 17 40 40 H 1.08993 * 109.25568 * 171.37936 * 22 21 19 41 41 H 1.09008 * 109.25073 * 290.84365 * 22 21 19 42 42 H 1.07995 * 119.73002 * 359.62950 * 24 23 22 43 43 H 1.08003 * 120.11808 * 180.02562 * 25 24 23 44 44 H 1.08003 * 120.11644 * 180.41792 * 26 25 24 45 45 H 1.08002 * 119.73040 * 179.61265 * 27 26 25 46 46 H 1.09002 * 109.25633 * 102.58639 * 29 28 23 47 47 H 1.09002 * 109.24932 * 222.01084 * 29 28 23 48 48 H 1.08996 * 113.61811 * 105.45888 * 30 10 9 49 49 H 1.09004 * 113.61066 * 334.54749 * 30 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3463 -0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8916 2.3964 1.2125 7 6 2.0103 -1.2023 0.0005 8 1 3.0903 -1.2023 0.0001 9 7 1.3256 -2.3882 0.0016 10 6 2.0580 -3.6569 0.0016 11 1 3.0658 -3.5637 0.4062 12 6 1.2605 -4.8286 0.5982 13 6 1.8492 -5.6984 -0.5250 14 1 2.7993 -6.1646 -0.2639 15 6 0.8469 -6.6873 -1.1237 16 7 1.5289 -7.5461 -2.0951 17 6 0.8396 -8.4996 -2.7523 18 8 -0.3454 -8.6465 -2.5399 19 6 1.5409 -9.3827 -3.7520 20 1 1.9564 -8.7723 -4.5538 21 6 0.5467 -10.3939 -4.3349 22 6 1.2171 -11.1078 -5.5069 23 6 2.5638 -11.6458 -5.0992 24 6 3.1394 -12.6235 -5.9008 25 6 4.3741 -13.1511 -5.5852 26 6 5.0477 -12.6999 -4.4651 27 6 4.4737 -11.7358 -3.6630 28 6 3.2301 -11.2035 -3.9787 29 6 2.6622 -10.1543 -3.0591 30 6 2.0000 -4.4039 -1.3414 31 1 -0.4849 0.8400 -0.0004 32 1 0.3555 -2.3881 0.0016 33 1 0.1801 -4.7007 0.5307 34 1 1.5918 -5.1196 1.5950 35 1 0.0481 -6.1380 -1.6221 36 1 0.4242 -7.3021 -0.3290 37 1 2.4767 -7.4288 -2.2647 38 1 0.2720 -11.1210 -3.5707 39 1 -0.3448 -9.8728 -4.6839 40 1 0.5847 -11.9328 -5.8346 41 1 1.3458 -10.4048 -6.3300 42 1 2.6158 -12.9735 -6.7780 43 1 4.8155 -13.9106 -6.2135 44 1 6.0178 -13.1044 -4.2166 45 1 4.9976 -11.3884 -2.7847 46 1 2.2676 -10.6359 -2.1644 47 1 3.4530 -9.4604 -2.7739 48 1 2.9282 -4.3521 -1.9103 49 1 1.1217 -4.1599 -1.9391 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086211162.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:02:44 Heat of formation + Delta-G solvation = -23.241103 kcal Electronic energy + Delta-G solvation = -26693.466942 eV Core-core repulsion = 23005.031933 eV Total energy + Delta-G solvation = -3688.435008 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 328.189 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.51857 -40.43165 -39.71588 -36.73731 -36.04407 -35.02637 -33.51437 -32.21034 -31.34871 -29.97822 -28.46387 -26.44792 -25.93922 -25.08243 -23.94279 -23.02006 -22.40647 -21.65591 -20.56158 -20.14689 -19.04956 -18.16410 -17.42100 -17.08096 -16.83558 -16.59532 -16.21208 -15.84101 -15.73484 -15.43130 -15.23319 -15.06233 -14.74791 -14.65345 -14.43622 -14.03287 -13.81683 -13.51785 -13.37998 -13.22868 -13.03602 -12.97033 -12.91539 -12.66124 -12.41482 -12.31546 -12.16626 -12.05887 -11.99299 -11.74094 -11.57663 -11.53778 -11.34978 -11.08921 -10.84037 -10.67190 -10.05412 -9.61076 -9.42178 -8.97352 -7.94586 -5.22807 0.49445 0.51853 1.47450 1.48119 1.58209 1.62650 2.20377 2.56806 2.88345 3.37378 3.48761 3.63949 3.74510 3.76424 3.83283 3.93839 4.05356 4.08439 4.15538 4.26391 4.26696 4.34790 4.38248 4.42616 4.44937 4.55728 4.57692 4.62324 4.74263 4.78147 4.90158 4.91152 4.97012 4.99128 5.00376 5.06722 5.11134 5.18154 5.23527 5.27278 5.33193 5.38504 5.45845 5.54327 5.64005 5.68305 5.74672 5.77994 6.17939 6.27953 6.58186 7.26861 7.33229 8.11959 8.33363 9.29168 Molecular weight = 328.19amu Principal moments of inertia in cm(-1) A = 0.022547 B = 0.001850 C = 0.001798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1241.572873 B =15131.874019 C =15569.033276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.973 5.973 2 C -0.082 4.082 3 Si 0.973 3.027 4 H -0.263 1.263 5 H -0.296 1.296 6 H -0.295 1.295 7 C -0.240 4.240 8 H 0.080 0.920 9 N -0.731 5.731 10 C 0.143 3.857 11 H 0.082 0.918 12 C -0.138 4.138 13 C -0.094 4.094 14 H 0.123 0.877 15 C 0.137 3.863 16 N -0.712 5.712 17 C 0.514 3.486 18 O -0.587 6.587 19 C -0.098 4.098 20 H 0.116 0.884 21 C -0.098 4.098 22 C -0.076 4.076 23 C -0.089 4.089 24 C -0.131 4.131 25 C -0.130 4.130 26 C -0.132 4.132 27 C -0.127 4.127 28 C -0.088 4.088 29 C -0.065 4.065 30 C -0.153 4.153 31 H 0.250 0.750 32 H 0.371 0.629 33 H 0.065 0.935 34 H 0.078 0.922 35 H 0.044 0.956 36 H 0.064 0.936 37 H 0.416 0.584 38 H 0.058 0.942 39 H 0.066 0.934 40 H 0.087 0.913 41 H 0.086 0.914 42 H 0.134 0.866 43 H 0.138 0.862 44 H 0.138 0.862 45 H 0.136 0.864 46 H 0.075 0.925 47 H 0.101 0.899 48 H 0.068 0.932 49 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.234 -29.860 -10.792 33.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.624 5.624 2 C -0.274 4.274 3 Si 0.803 3.197 4 H -0.187 1.187 5 H -0.223 1.223 6 H -0.222 1.222 7 C -0.372 4.372 8 H 0.098 0.902 9 N -0.368 5.368 10 C 0.033 3.967 11 H 0.100 0.900 12 C -0.177 4.177 13 C -0.113 4.113 14 H 0.141 0.859 15 C 0.013 3.987 16 N -0.364 5.364 17 C 0.301 3.699 18 O -0.467 6.467 19 C -0.119 4.119 20 H 0.134 0.866 21 C -0.136 4.136 22 C -0.113 4.113 23 C -0.089 4.089 24 C -0.149 4.149 25 C -0.148 4.148 26 C -0.150 4.150 27 C -0.145 4.145 28 C -0.088 4.088 29 C -0.102 4.102 30 C -0.194 4.194 31 H 0.058 0.942 32 H 0.203 0.797 33 H 0.083 0.917 34 H 0.097 0.903 35 H 0.062 0.938 36 H 0.082 0.918 37 H 0.253 0.747 38 H 0.077 0.923 39 H 0.085 0.915 40 H 0.106 0.894 41 H 0.105 0.895 42 H 0.152 0.848 43 H 0.156 0.844 44 H 0.156 0.844 45 H 0.154 0.846 46 H 0.094 0.906 47 H 0.119 0.881 48 H 0.087 0.913 49 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 10.567 -29.806 -10.610 33.356 hybrid contribution -0.127 1.315 -0.014 1.321 sum 10.440 -28.491 -10.625 32.150 Atomic orbital electron populations 1.69835 1.06735 1.25902 1.59882 1.25615 0.96386 1.01293 1.04060 0.85065 0.78381 0.79804 0.76478 1.18691 1.22346 1.22221 1.19784 0.91638 0.85355 1.40433 0.90193 1.42652 1.05353 1.01288 1.87488 1.21970 0.95637 0.83817 0.95256 0.90048 1.23331 0.99853 0.95987 0.98548 1.22467 0.99460 0.92929 0.96419 0.85866 1.21211 0.94816 0.91546 0.91108 1.45949 1.13943 1.34375 1.42107 1.21090 0.86848 0.80544 0.81410 1.90694 1.17691 1.71498 1.66807 1.21314 0.97033 0.96390 0.97185 0.86645 1.21320 0.97295 0.97097 0.97849 1.20496 0.92474 1.00541 0.97800 1.19838 0.96683 0.97210 0.95184 1.21401 0.96373 0.97023 1.00092 1.21379 0.95226 1.00378 0.97804 1.21369 1.00724 0.97517 0.95362 1.21392 0.95043 0.97594 1.00480 1.19627 0.95137 0.98216 0.95803 1.20398 0.96776 0.96072 0.96924 1.23721 1.01030 0.96127 0.98500 0.94157 0.79711 0.91669 0.90295 0.93783 0.91793 0.74740 0.92277 0.91540 0.89445 0.89540 0.84834 0.84438 0.84413 0.84648 0.90616 0.88115 0.91279 0.92770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.30 13.06 21.66 0.28 -60.02 16 2 C -0.08 -4.71 5.50 84.86 0.47 -4.25 16 3 Si 0.97 46.15 29.55 68.60 2.03 48.18 16 4 H -0.26 -11.53 7.11 99.48 0.71 -10.82 16 5 H -0.30 -14.12 7.11 99.48 0.71 -13.41 16 6 H -0.29 -14.02 7.11 99.48 0.71 -13.31 16 7 C -0.24 -13.24 9.97 84.04 0.84 -12.40 16 8 H 0.08 4.17 7.83 -2.91 -0.02 4.15 16 9 N -0.73 -36.66 5.40 -320.44 -1.73 -38.39 16 10 C 0.14 5.29 4.48 45.52 0.20 5.50 16 11 H 0.08 2.91 8.10 -2.39 -0.02 2.89 16 12 C -0.14 -4.13 7.39 31.12 0.23 -3.90 16 13 C -0.09 -2.19 3.75 -10.27 -0.04 -2.23 16 14 H 0.12 2.14 8.14 -2.39 -0.02 2.12 16 15 C 0.14 3.34 5.51 86.38 0.48 3.82 16 16 N -0.71 -13.85 5.46 -463.05 -2.53 -16.38 16 17 C 0.51 11.73 7.14 87.66 0.63 12.36 16 18 O -0.59 -18.99 15.85 -3.05 -0.05 -19.04 16 19 C -0.10 -1.57 2.55 -11.52 -0.03 -1.60 16 20 H 0.12 1.54 8.10 -2.39 -0.02 1.52 16 21 C -0.10 -1.68 4.72 30.61 0.14 -1.54 16 22 C -0.08 -1.00 5.67 29.74 0.17 -0.83 16 23 C -0.09 -1.29 5.74 -19.86 -0.11 -1.41 16 24 C -0.13 -1.69 9.61 22.36 0.21 -1.47 16 25 C -0.13 -1.54 10.05 22.20 0.22 -1.31 16 26 C -0.13 -1.56 10.05 22.20 0.22 -1.34 16 27 C -0.13 -1.62 9.61 22.36 0.21 -1.41 16 28 C -0.09 -1.26 5.74 -19.86 -0.11 -1.37 16 29 C -0.06 -0.83 4.82 29.74 0.14 -0.69 16 30 C -0.15 -4.74 7.43 31.12 0.23 -4.51 16 31 H 0.25 15.01 8.31 -92.71 -0.77 14.24 16 32 H 0.37 20.35 7.92 -92.70 -0.73 19.61 16 33 H 0.06 2.18 8.08 -2.39 -0.02 2.16 16 34 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 35 H 0.04 1.32 7.84 -2.39 -0.02 1.30 16 36 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 37 H 0.42 5.44 8.08 -92.71 -0.75 4.69 16 38 H 0.06 1.15 8.10 -2.39 -0.02 1.13 16 39 H 0.07 1.32 7.80 -2.39 -0.02 1.30 16 40 H 0.09 0.98 8.12 -2.39 -0.02 0.96 16 41 H 0.09 0.99 8.14 -2.38 -0.02 0.97 16 42 H 0.13 1.25 8.05 -2.91 -0.02 1.22 16 43 H 0.14 1.04 8.06 -2.91 -0.02 1.02 16 44 H 0.14 1.06 8.06 -2.91 -0.02 1.04 16 45 H 0.14 1.24 8.05 -2.91 -0.02 1.22 16 46 H 0.08 1.09 8.11 -2.39 -0.02 1.07 16 47 H 0.10 0.87 7.81 -2.39 -0.02 0.85 16 48 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 49 H 0.05 1.96 7.90 -2.39 -0.02 1.94 16 Total: -1.00 -72.37 395.42 1.57 -70.80 By element: Atomic # 1 Polarization: 33.98 SS G_CDS: -0.54 Total: 33.44 kcal Atomic # 6 Polarization: -22.69 SS G_CDS: 4.11 Total: -18.58 kcal Atomic # 7 Polarization: -110.82 SS G_CDS: -3.98 Total: -114.80 kcal Atomic # 8 Polarization: -18.99 SS G_CDS: -0.05 Total: -19.04 kcal Atomic # 14 Polarization: 46.15 SS G_CDS: 2.03 Total: 48.18 kcal Total: -72.37 1.57 -70.80 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086211162.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.558 kcal (2) G-P(sol) polarization free energy of solvation -72.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.800 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds