Wall clock time and date at job start Tue Mar 31 2020 16:04:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86799 * 119.99987 * 2 1 4 4 H 1.48499 * 109.46934 * 239.99746 * 3 2 1 5 5 H 1.48498 * 109.47138 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47200 * 119.99765 * 3 2 1 7 7 C 1.38814 * 120.00089 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00041 * 180.02562 * 7 2 1 9 9 N 1.36941 * 119.99712 * 0.02562 * 7 2 1 10 10 C 1.46503 * 119.99640 * 179.97438 * 9 7 2 11 11 H 1.08996 * 112.91043 * 336.25141 * 10 9 7 12 12 C 1.53954 * 113.53284 * 107.50999 * 10 9 7 13 13 C 1.53779 * 87.02000 * 89.18642 * 12 10 9 14 14 H 1.08995 * 113.61453 * 270.76373 * 13 12 10 15 15 C 1.53003 * 113.61211 * 139.95009 * 13 12 10 16 16 N 1.46491 * 109.47394 * 85.86233 * 15 13 12 17 17 C 1.34774 * 120.00468 * 179.97438 * 16 15 13 18 18 O 1.21283 * 119.99961 * 5.12545 * 17 16 15 19 19 C 1.50702 * 120.00622 * 185.12672 * 17 16 15 20 20 H 1.09005 * 109.24279 * 24.15650 * 19 17 16 21 21 C 1.52736 * 109.25824 * 143.62625 * 19 17 16 22 22 C 1.53323 * 108.37569 * 171.30571 * 21 19 17 23 23 C 1.52736 * 108.37411 * 290.07695 * 22 21 19 24 24 C 1.50629 * 110.55165 * 51.09589 * 23 22 21 25 25 C 1.38973 * 117.71122 * 162.55167 * 24 23 22 26 26 C 1.37925 * 120.54014 * 179.72684 * 25 24 23 27 27 C 1.38271 * 119.76780 * 359.97368 * 26 25 24 28 28 C 1.37932 * 119.77054 * 0.10367 * 27 26 25 29 29 C 1.37614 * 122.61101 * 342.38871 * 24 23 22 30 30 C 1.53777 * 87.17312 * 25.36093 * 13 12 10 31 31 H 0.97004 * 120.00428 * 0.02562 * 1 2 3 32 32 H 0.96998 * 119.99985 * 0.02562 * 9 7 2 33 33 H 1.08995 * 113.66811 * 334.65864 * 12 10 9 34 34 H 1.09004 * 113.60761 * 203.70706 * 12 10 9 35 35 H 1.08997 * 109.47371 * 325.85920 * 15 13 12 36 36 H 1.09003 * 109.46939 * 205.86298 * 15 13 12 37 37 H 0.97008 * 119.99966 * 0.02562 * 16 15 13 38 38 H 1.09000 * 109.68013 * 51.58442 * 21 19 17 39 39 H 1.08998 * 109.71405 * 291.05335 * 21 19 17 40 40 H 1.09002 * 109.68349 * 170.35825 * 22 21 19 41 41 H 1.09005 * 109.68345 * 49.79861 * 22 21 19 42 42 H 1.09001 * 109.25165 * 171.35772 * 23 22 21 43 43 H 1.09000 * 109.25496 * 290.83069 * 23 22 21 44 44 H 1.08001 * 119.73565 * 359.69309 * 25 24 23 45 45 H 1.08000 * 120.11988 * 179.97438 * 26 25 24 46 46 H 1.07999 * 120.11336 * 180.08473 * 27 26 25 47 47 H 1.07995 * 119.72628 * 179.97438 * 28 27 26 48 48 H 1.09000 * 113.62273 * 89.16041 * 30 13 12 49 49 H 1.09013 * 113.61374 * 220.05870 * 30 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6963 -1.2125 5 1 1.2852 2.7464 -0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0902 -1.2021 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0581 -3.6568 0.0005 11 1 3.0661 -3.5648 -0.4038 12 6 1.9977 -4.4015 1.3466 13 6 0.7203 -5.0791 0.8230 14 1 -0.1911 -4.5251 1.0474 15 6 0.6195 -6.5616 1.1876 16 7 0.0209 -6.6978 2.5177 17 6 -0.1679 -7.9216 3.0497 18 8 0.2415 -8.9048 2.4694 19 6 -0.8877 -8.0685 4.3655 20 1 -1.5332 -7.2040 4.5204 21 6 -1.7408 -9.3350 4.3344 22 6 -2.2887 -9.5836 5.7447 23 6 -1.1280 -10.0011 6.6454 24 6 0.0112 -9.0227 6.5277 25 6 0.9772 -9.0323 7.5267 26 6 2.0484 -8.1651 7.4742 27 6 2.1632 -7.2789 6.4190 28 6 1.2045 -7.2669 5.4274 29 6 0.1242 -8.1386 5.4792 30 6 1.2602 -4.8288 -0.5950 31 1 -0.4851 0.8400 -0.0004 32 1 0.3556 -2.3880 -0.0002 33 1 1.8259 -3.7472 2.2013 34 1 2.8266 -5.0923 1.5009 35 1 1.6158 -7.0036 1.1905 36 1 -0.0033 -7.0744 0.4546 37 1 -0.2402 -5.9071 3.0153 38 1 -1.1292 -10.1820 4.0235 39 1 -2.5680 -9.2041 3.6368 40 1 -3.0340 -10.3783 5.7142 41 1 -2.7413 -8.6695 6.1291 42 1 -1.4693 -10.0325 7.6801 43 1 -0.7827 -10.9920 6.3506 44 1 0.8882 -9.7241 8.3513 45 1 2.7950 -8.1781 8.2545 46 1 3.0004 -6.5983 6.3716 47 1 1.2946 -6.5742 4.6038 48 1 1.8870 -5.6366 -0.9726 49 1 0.4938 -4.5189 -1.3056 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086400620.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:04:16 Heat of formation + Delta-G solvation = 0.169361 kcal Electronic energy + Delta-G solvation = -27497.878075 eV Core-core repulsion = 23810.458221 eV Total energy + Delta-G solvation = -3687.419854 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 328.189 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.90804 -39.27737 -38.41035 -36.17905 -34.65244 -33.33034 -32.81858 -30.49772 -30.19163 -29.29794 -27.40112 -25.08496 -24.54316 -23.63871 -22.94477 -22.64753 -21.63209 -20.60082 -19.54172 -18.43436 -17.49087 -17.10948 -16.75460 -16.12266 -15.70882 -15.54678 -15.15981 -14.86392 -14.44655 -14.21414 -14.11574 -13.92275 -13.61618 -13.48370 -13.26227 -13.10434 -12.88183 -12.62641 -12.34251 -12.24399 -11.95373 -11.89445 -11.64831 -11.40412 -11.24034 -11.05992 -10.96374 -10.84846 -10.60559 -10.50834 -10.22911 -10.13292 -9.78401 -9.71132 -9.47877 -9.00951 -8.95051 -8.89438 -8.75341 -7.02606 -5.82989 -3.12095 1.12293 1.17619 2.58309 3.14244 3.40802 3.45426 3.46234 3.57324 4.27851 4.35687 4.53743 4.57744 4.64696 4.71511 4.85667 4.90850 4.97526 5.03976 5.07805 5.12553 5.17280 5.22358 5.25847 5.38392 5.43096 5.56775 5.58160 5.61068 5.66560 5.70044 5.71719 5.81021 5.85214 5.91636 5.94591 6.05915 6.09697 6.19579 6.27673 6.34018 6.35204 6.38888 6.41802 6.57385 6.72000 6.79659 6.88142 7.02101 7.48742 7.66362 8.18708 8.36233 9.46846 10.04279 10.38518 11.39373 Molecular weight = 328.19amu Principal moments of inertia in cm(-1) A = 0.016105 B = 0.002418 C = 0.002277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1738.170075 B =11579.005731 C =12294.740492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.012 4.012 3 Si 0.909 3.091 4 H -0.285 1.285 5 H -0.291 1.291 6 H -0.285 1.285 7 C -0.243 4.243 8 H 0.071 0.929 9 N -0.705 5.705 10 C 0.168 3.832 11 H 0.062 0.938 12 C -0.169 4.169 13 C -0.120 4.120 14 H 0.093 0.907 15 C 0.130 3.870 16 N -0.725 5.725 17 C 0.520 3.480 18 O -0.539 6.539 19 C -0.066 4.066 20 H 0.100 0.900 21 C -0.106 4.106 22 C -0.118 4.118 23 C -0.082 4.082 24 C -0.068 4.068 25 C -0.123 4.123 26 C -0.118 4.118 27 C -0.119 4.119 28 C -0.117 4.117 29 C -0.066 4.066 30 C -0.148 4.148 31 H 0.256 0.744 32 H 0.385 0.615 33 H 0.066 0.934 34 H 0.067 0.933 35 H 0.066 0.934 36 H 0.063 0.937 37 H 0.402 0.598 38 H 0.081 0.919 39 H 0.071 0.929 40 H 0.072 0.928 41 H 0.067 0.933 42 H 0.075 0.925 43 H 0.077 0.923 44 H 0.121 0.879 45 H 0.122 0.878 46 H 0.124 0.876 47 H 0.124 0.876 48 H 0.077 0.923 49 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.650 -20.425 14.407 25.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.208 4.208 3 Si 0.739 3.261 4 H -0.212 1.212 5 H -0.217 1.217 6 H -0.212 1.212 7 C -0.374 4.374 8 H 0.089 0.911 9 N -0.344 5.344 10 C 0.055 3.945 11 H 0.080 0.920 12 C -0.210 4.210 13 C -0.138 4.138 14 H 0.111 0.889 15 C 0.007 3.993 16 N -0.376 5.376 17 C 0.306 3.694 18 O -0.415 6.415 19 C -0.087 4.087 20 H 0.118 0.882 21 C -0.144 4.144 22 C -0.156 4.156 23 C -0.119 4.119 24 C -0.069 4.069 25 C -0.141 4.141 26 C -0.136 4.136 27 C -0.137 4.137 28 C -0.135 4.135 29 C -0.067 4.067 30 C -0.187 4.187 31 H 0.066 0.934 32 H 0.219 0.781 33 H 0.085 0.915 34 H 0.086 0.914 35 H 0.084 0.916 36 H 0.081 0.919 37 H 0.237 0.763 38 H 0.100 0.900 39 H 0.090 0.910 40 H 0.091 0.909 41 H 0.086 0.914 42 H 0.094 0.906 43 H 0.096 0.904 44 H 0.139 0.861 45 H 0.140 0.860 46 H 0.142 0.858 47 H 0.142 0.858 48 H 0.095 0.905 49 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -2.254 -20.940 13.934 25.254 hybrid contribution 0.093 1.440 0.306 1.475 sum -2.161 -19.500 14.240 24.242 Atomic orbital electron populations 1.69648 1.05138 1.25925 1.57390 1.24761 0.95540 0.97788 1.02749 0.86245 0.78529 0.83372 0.77909 1.21185 1.21669 1.21210 1.19245 0.91087 0.83980 1.43098 0.91056 1.42163 1.05667 0.99425 1.87147 1.21083 0.95089 0.85582 0.92707 0.91983 1.23914 0.95682 0.99614 1.01767 1.22709 0.99571 0.92927 0.98626 0.88900 1.21486 0.98130 0.97027 0.82673 1.46220 1.63559 1.07991 1.19843 1.20393 0.79398 0.83265 0.86339 1.90682 1.50111 1.38018 1.62737 1.20217 0.96108 1.01446 0.90918 0.88216 1.21464 0.98866 0.96727 0.97293 1.21555 0.97279 1.01999 0.94748 1.20504 0.93235 0.97678 1.00452 1.19554 0.96654 0.96482 0.94167 1.21138 0.94645 0.99612 0.98714 1.21102 0.98042 0.96075 0.98408 1.21092 0.99022 0.99151 0.94403 1.21314 0.94197 0.98746 0.99208 1.19104 0.95862 0.96872 0.94851 1.23439 1.00496 0.99694 0.95119 0.93374 0.78114 0.91514 0.91445 0.91571 0.91900 0.76322 0.89986 0.91010 0.90896 0.91381 0.90646 0.90416 0.86111 0.86024 0.85812 0.85849 0.90483 0.91322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.60 13.06 55.49 0.72 -26.88 16 2 C -0.01 -0.35 5.50 -17.43 -0.10 -0.44 16 3 Si 0.91 22.03 29.55 -169.99 -5.02 17.01 16 4 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 5 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 6 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 7 C -0.24 -6.61 9.97 -15.06 -0.15 -6.76 16 8 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 9 N -0.71 -17.16 5.31 -52.55 -0.28 -17.44 16 10 C 0.17 3.22 4.57 -67.03 -0.31 2.92 16 11 H 0.06 1.21 8.10 -51.93 -0.42 0.79 16 12 C -0.17 -2.75 7.44 -25.83 -0.19 -2.94 16 13 C -0.12 -1.75 3.62 -89.81 -0.33 -2.07 16 14 H 0.09 1.45 8.14 -51.93 -0.42 1.03 16 15 C 0.13 1.72 5.50 -4.04 -0.02 1.70 16 16 N -0.72 -8.73 4.75 -60.30 -0.29 -9.02 16 17 C 0.52 6.80 5.73 -10.99 -0.06 6.73 16 18 O -0.54 -9.01 16.12 5.55 0.09 -8.92 16 19 C -0.07 -0.68 2.57 -93.09 -0.24 -0.92 16 20 H 0.10 0.86 8.12 -51.93 -0.42 0.44 16 21 C -0.11 -0.99 5.07 -26.70 -0.14 -1.12 16 22 C -0.12 -0.85 5.98 -26.70 -0.16 -1.01 16 23 C -0.08 -0.61 5.67 -28.05 -0.16 -0.77 16 24 C -0.07 -0.68 5.74 -104.61 -0.60 -1.28 16 25 C -0.12 -1.12 9.61 -39.42 -0.38 -1.50 16 26 C -0.12 -1.10 10.05 -39.68 -0.40 -1.50 16 27 C -0.12 -1.24 10.05 -39.68 -0.40 -1.64 16 28 C -0.12 -1.33 9.04 -39.44 -0.36 -1.69 16 29 C -0.07 -0.73 5.42 -104.63 -0.57 -1.30 16 30 C -0.15 -2.34 7.39 -25.92 -0.19 -2.53 16 31 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 32 H 0.38 9.89 7.90 -40.82 -0.32 9.56 16 33 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 34 H 0.07 1.00 7.92 -51.93 -0.41 0.59 16 35 H 0.07 0.93 7.87 -51.93 -0.41 0.52 16 36 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 37 H 0.40 4.22 8.34 -40.82 -0.34 3.88 16 38 H 0.08 0.91 7.51 -51.93 -0.39 0.52 16 39 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 41 H 0.07 0.47 8.10 -51.93 -0.42 0.05 16 42 H 0.08 0.45 8.13 -51.93 -0.42 0.03 16 43 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 44 H 0.12 0.83 8.05 -52.49 -0.42 0.40 16 45 H 0.12 0.86 8.06 -52.49 -0.42 0.44 16 46 H 0.12 1.11 8.06 -52.49 -0.42 0.69 16 47 H 0.12 1.41 6.53 -52.49 -0.34 1.06 16 48 H 0.08 1.07 8.10 -51.93 -0.42 0.65 16 49 H 0.07 1.15 8.14 -51.92 -0.42 0.73 16 LS Contribution 392.95 15.07 5.92 5.92 Total: -1.00 -31.89 392.95 -11.69 -43.57 By element: Atomic # 1 Polarization: 19.98 SS G_CDS: -8.09 Total: 11.88 kcal Atomic # 6 Polarization: -11.40 SS G_CDS: -4.74 Total: -16.14 kcal Atomic # 7 Polarization: -53.49 SS G_CDS: 0.16 Total: -53.33 kcal Atomic # 8 Polarization: -9.01 SS G_CDS: 0.09 Total: -8.92 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -31.89 -11.69 -43.57 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086400620.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.744 kcal (2) G-P(sol) polarization free energy of solvation -31.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.575 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds